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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
YAB1
<---------
YAB1
<-------
TEIL
<---------
ICU4
<------
MYB83
------>
ZmHOX2a(2)
--------->
LBD16
<------
ZmHOX2a(1)
<---------
ARR11(3)
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ARR11(3)
<---------
ANAC58
<---------
GLK1(1)
<----------
DOF2
<------
MYB46(1)
--------->
ICU4
----------
GT1
<-----------
GT1
---------->
DOF2
--------->
MYB59
--------->
YAB1
tttgcttccccaatttttacgatttctgtgttcaaagcagactttaggaacgagccaatttggttcaaaaaccttctctgtaatgatctacattcataga
17321200
---------->
DOF2
--------->
AHL20(2)
<------
ZmHOX2a(1)
--------->
AHL20(1)
<---------
TOE2(3)
--------->
AHL20(2)
<---------
YAB1
<------
ZmHOX2a(2)
--------->
AHL20(2)
----------->
GT1
--------->
ARR11(3)
--------->
YAB1
--------->
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
CCA1(1)
----------->
GT1
--------->
YAB1
<---------
AHL20(2)
--------->
RVE1(1)
<-------
ttaaaacatagtttgcagtaagaaaaaacaataaaaataatataaaagttattttttttaatttgtgaaaaatccaaaatatcattgttttaggatcaga
17321300
---
<--
<---
----------->
GT1
--------->
AHL20(2)
<---------
ANAC46
<---------
AHL20(2)
--------->
ZAT14
--------->
AHL20(1)
<---------
ZAT14
--------->
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
--------->
YAB1
--------->
AHL20(1)
--------->
YAB1
----------->
GT1
<---------
AHL20(2)
--------->
AHL20(2)
----------->
GT1
<---------
YAB1
----
<---------
AHL20(2)
<---------
TOE2(3)
--------->
ICU4
<---
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
----
<---------
AHL20(2)
<---------
ZAT6
--------->
AHL20(2)
<---------
AHL20(2)
<-----
--------->
YAB1
<---------
ICU4
--------->
AHL20(2)
--------->
TOE2(3)
<---------
AHL20(2)
----------->
GT1
--------->
REM1(2)
<---------
AHL20(2)
----------->
GT1
<---------
AHL20(2)
----
RAV1(2)
<---------
YAB1
----------->
GT1
----------->
GT1
--------->
AHL20(2)
gggaatagtaaatttataatcagtgtagtgaaaaatgtgtaaataaataatgtaaaaccaattgaaactgcaaatgttaaattatgaattaaattaatta
17321400
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
----------->
GT1
--------->
AHL20(2)
---------->
DOF2
<---------
YAB1
--------->
YAB1
--------->
AHL20(2)
------------>
AGL15
--------->
YAB1
-------------
AGL15
<---------
AHL20(2)
--------->
YAB1
------
YAB1
--------->
AHL20(1)
--------->
AHL20(2)
--------->
AHL20(1)
------------->
AGL3
--------->
AHL20(2)
----------->
GT1
--------------
AGL3
--------->
YAB1
<---------
AHL20(2)
---------->
DOF2
--------->
AHL20(2)
------------->
AGL2
--------->
AHL20(2)
<----------
DOF2
--------->
YAB1
----------->
GT1
------
GT1
--------->
AHL20(2)
<---------
AHL20(2)
------>
ZmHOX2a(1)
--------->
AHL20(2)
<---------
AHL20(2)
ctataaaaagaaataatataatgctaagtatttatttataaaattataatccttttaaatgtgtaaaaaataataaagagtaatggataattaaacccag
17321500
<----------
DOF2
<-----------
GT1
<---------
ICU4
-
--------->
YAB1
----
--------->
GLK1(2)
------>
MYB83
--------->
YAB1
<---------
ZAT14
<-----------
GT1
------>
MYB46(1)
<-------
TEIL
--------->
ZAT6
<----------
DOF2
<----------
DOF2
xxxxxxxxx
<---------
TOE2(3)
<-----------
GT1
<----------
DOF2
------------>
CBF
<<<<<<<<<
TBF1
---------
cccattaagtttcataagcccattttactctactgtcttctttctcttttttttgacaatctttactttcttcttctaagctctataagagagaccatcc
17321600
--------->
ANAC46
--------->
ANAC58
---------->
DOF2
--------->
ANAC58
--------->
ANAC58
--------->
SPL7
<---------
ANAC58
<---------
ARR14(2)
<---------
ANAC58
--------->
ARR14(2)
-
<---------
ANAC46
<---------
LBD16
<
----->
ZmHOX2a(1)
*
TSS
<----------
DOF2
<---------
ARR11(3)
--------->
bZIP60(1)
-->
ZmHOX2a(1)
--------->
ANAC58
---------->
DOF2
<---------------
AtSPL3
----
xxxxxxx>
smallRNA(i)
--------->
DAG2
>>>>>>>>>
TBF1
<------
ZmHOX2a(1)
<---------
bZIP60(1)
>
AtMYB61
--------->
MYB52(1)
<------
ZmHOX2a(1)
--------->
ARR11(3)
----------->
HVH21
tcctctagcttgaagc
aaacgaaaagcttttgaagaacagaggaacaagaagaagaaag
atgttcaggaaccagtacgacacagatgtgacaacatggag
17321700
<------
ZmHOX2a(2)
==========================
HOX2a_HOX2a
--------->
ARR14(2)
================
HOX2a_HOX2a
===============
HOX2a_HOX2a
----------->
GT1
<---------
At4g35610
=========================
HOX2a_HOX2a
<---------
ZAT2
--------->
LBD16
<---------
ARR14(2)
--------->
ZAT2
--------->
At4g35610
------>
ZmHOX2a(2)
<---------
At4g35610
<------
ZmHOX2a(1)
--------->
At4g35610
----------->
RAV1(1)
<-----
--------->
AtLEC2
--------->
ANAC46
--------->
AGP1
<---------
ANAC58
--------->
ANAC58
<------
NtERF2
--------->
ARR11(3)
<-----
<---------
ETT(2)
--------->
ANAC46
<---------
LBD16
<---------
ARR11(3)
<-----
---------->
RAV1(1)
--------->
ANAC58
<---------
ATERF1(1)
<-----------
ARR10
------>
ZmHOX2a(1)
---------
ALFIN1
<---------
ARR14(2)
<---------
ARR14(2)
<---------
AGP1
<---------
ANAC58
----->
PCF2
--------->
ARR14(2)
--------->
ARR14(2)
<---------
CCA1(2)
<---------
SPL7
tcccacaggtcgactattccaagtcgaatacgccatggaagctgtgaaacaaggctccgcagcaataggactcagatctcgctctcatgtcgtcctcgct
17321800
<---------
YAB1
---------->
DOF2
<----------
DOF2
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
RVE1(1)
<---------
AGP1
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ARR11(3)
<-----------
RAV1(1)
<-
---------->
DOF2
--------->
ARR14(3)
<---------
REM1(1)
--------->
At4g35610
----
ANAC46
<---------
ZAT18
<---------
ARR14(3)
--------->
YAB1
<---------
At4g35610
----
ANAC58
--------->
ZAT14
----------->
ARR10
--------->
ARR11(3)
<---------
ANAC58
<-
----
ANAC58
--------->
YAB1
---------->
DOF2
--------->
YAB1
<---------
ANAC58
<-----
tgtgtcaacaaagcacaatcagagctctcttctcatcaaaggaagatctttaaagtcgatgatcatattggtgttgctattgctggtctcactgctgatg
17321900
--------->
WOX13(1)
<-----------
GT1
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
---------->
ID1
--------->
CCA1(2)
<------
MYB83
<---------
ARR14(2)
<------
MYB46(1)
--------->
ARR11(3)
<---------
MYB46(3)
<---------
AGP1
<---------
AtMYB61
--------->
AGP1
<---------
ATHB12
<---------
MYB52(1)
--------->
ARR14(2)
<--------
P
--------
ANAC58
<---------
ARR11(3)
<----------
DOF2
<-----------
RAV1(1)
--
--------
ANAC58
<---------
GLK1(1)
<-----------
GT1
------>
ZmHOX2a(1)
---
----
AtMYB61
--------->
CCA1(2)
--------->
YAB1
<---------
YAB1
------>
ZmHOX2a(1)
<-------
gtcgtgttctctctcgatatatgagatctgagtctattaatcactcttttacttatgagtctcctcttcctgttggtcgtcttgttgttcatcttgctga
17322000
--------->
At4g35610
--------->
ARR14(2)
----------->
GT1
<---------
ARR14(2)
<-----------
RAV1(2)
<----------
DOF2
--------->
GLK1(2)
------->
DAG2
--------->
ARR11(3)
--------->
ALFIN1
------->
DOF2
<---------
ARR11(3)
<---------
GLK1(2)
<---------
ANAC46
--
ANAC46
<---------
TOE2(3)
-------->
ZAP1
---------->
DOF2
<---------
YAB1
---------->
DOF2
taaagctcag
gtaaattgagatttttgggttaacttttgaattttgacctagaatttgctaaagggtttagttttatgatgtgtgagtatctgaaagttt
17322100
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AGI:
At1g47250.1
Description:
PAF2 (20S proteasome alpha subunit F2); peptidase. Identical to Proteasome subunit alpha type-1-B (PAF2) [Arabidopsis Thaliana] (GB:O23712); similar to PAF1 (proteasome alpha subunit F1), peptidase [Arabidopsis thaliana] (TAIR:AT5G42790.1); similar to unknown [Populus trichocarpa] (GB:ABK93062.1); contains InterPro domain Proteasome alpha-subunit, conserved site; (InterPro:IPR000426); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353)
Range:
from: 17321617
to: 17323514
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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