Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->YAB1                <---------YAB1                                                            <-------TEIL           <---------ICU4                                 <------MYB46(1)           ------>ZmHOX2a(2)      --------->LBD16                       <------ZmHOX2a(1)                     <---------ARR11(3) <---------ANAC58                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ARR11(3) <---------ANAC58  <---------GLK1(1)   <----------DOF2    <------MYB83          --------->ICU4 ----------GT1<-----------GT1 ---------->DOF2            --------->MYB59      --------->YAB1   tttgcttccccaatttttacgatttctgtgttcaaagcagactttaggaacgagccaatttggttcaaaaaccttctctgtaatgatctacattcataga  17321200                                         ---------->DOF2                                   --------->AHL20(2)                                     <------ZmHOX2a(1)                                 --------->AHL20(2)                                     <---------TOE2(3)                                 --------->AHL20(1)                           <---------YAB1<------ZmHOX2a(2)                              --------->AHL20(2)            ----------->GT1  <---------ARR11(3)                             --------->AHL20(2)        <---------AHL20(2)    --------->ARR11(3)                             --------->YAB1            --------->AHL20(2)   --------->CCA1(1)                 ----------->GT1--------->YAB1    <---------AHL20(2)        --------->RVE1(1)<-------   ttaaaacatagtttgcagtaagaaaaaacaataaaaataatataaaagttattttttttaatttgtgaaaaatccaaaatatcattgttttaggatcaga  17321300                                                                                                  ---                                                                                                  <--                                                                                                 <---                       <---------ANAC46                                                    --------->AHL20(2)                       ----------->GT1                                                     <---------AHL20(2)                     --------->REM1(2)                                                     --------->AHL20(1)                     --------->ZAT14                                                      --------->AHL20(2)                <---------YAB1                                                         --------->AHL20(2)              --------->YAB1                                                           --------->AHL20(1)           --------->YAB1----------->GT1                                              <---------AHL20(2)          --------->AHL20(2)                   ----------->GT1                   <---------YAB1  ----          <---------AHL20(2)                  <---------TOE2(3)               --------->ICU4     <---         --------->AHL20(2)                 <---------AHL20(2)             --------->AHL20(2)    ----      <---------AHL20(2) <---------ZAT6  --------->AHL20(2)                <---------AHL20(2)  <-----   --------->YAB1<---------ICU4         --------->AHL20(2)              --------->TOE2(3) <---------AHL20(2)   ----------->GT1   <---------ZAT14    <---------AHL20(2)              ----------->GT1<---------AHL20(2) ----RAV1(2) <---------YAB1       ----------->GT1                      ----------->GT1--------->AHL20(2)   gggaatagtaaatttataatcagtgtagtgaaaaatgtgtaaataaataatgtaaaaccaattgaaactgcaaatgttaaattatgaattaaattaatta  17321400              <---------AHL20(2)              <---------AHL20(1)              --------->AHL20(2)     ----------->GT1                                --------->AHL20(2)   ---------->DOF2                         <---------YAB1 --------->YAB1                           --------->AHL20(2) ------------>AGL15                      --------->YAB1 -------------AGL15                  --------->AHL20(2)             --------->YAB1 ------YAB1   --------->AHL20(1)     <---------AHL20(2)           --------->AHL20(1) ------------->AGL3                 --------->AHL20(2)    ----------->GT1 --------------AGL3              --------->YAB1     <---------AHL20(2) ---------->DOF2  --------->AHL20(2) ------------->AGL2          --------->AHL20(2)  ------>ZmHOX2a(1)--------->AHL20(2)    <---------AHL20(2) ------GT1 --------->AHL20(2)<---------AHL20(2)  <----------DOF2 --------->YAB1  ----------->GT1   ctataaaaagaaataatataatgctaagtatttatttataaaattataatccttttaaatgtgtaaaaaataataaagagtaatggataattaaacccag  17321500                                                               <----------DOF2                                                            <-----------GT1                                                         --------->YAB1                             -                                                         <---------ICU4                          ----                                                       --------->GLK1(2)                      ------>MYB83         --------->YAB1   <---------ZAT14          <-----------GT1                            ------>MYB46(1)        <-------TEIL    --------->ZAT6     <----------DOF2<----------DOF2                   xxxxxxxxx    <---------TOE2(3) <-----------GT1<----------DOF2------------>CBF<<<<<<<<<TBF1           ---------   cccattaagtttcataagcccattttactctactgtcttctttctcttttttttgacaatctttactttcttcttctaagctctataagagagaccatcc  17321600                                                                         --------->ANAC46                                                                         --------->ANAC58                   ---------->DOF2                                       --------->ANAC58                --------->ANAC58                                        --------->SPL7     <---------ANAC58                                            --------->ARR14(2)     <---------ANAC58                                            <---------ARR14(2)                 -     <---------ANAC46                                        <---------LBD16                        < ----->ZmHOX2a(1)*TSS   <----------DOF2                 <---------ARR11(3)             <---------bZIP60(1) -->ZmHOX2a(1)  --------->ANAC58                    ---------->DOF2 <---------------AtSPL3       ---- xxxxxxx>smallRNA(i)--------->DAG2               >>>>>>>>>TBF1  <------ZmHOX2a(1)      --------->bZIP60(1) >AtMYB61     --------->MYB52(1)       <------ZmHOX2a(1)--------->ARR11(3)          ----------->HVH21   tcctctagcttgaagcaaacgaaaagcttttgaagaacagaggaacaagaagaagaaagatgttcaggaaccagtacgacacagatgtgacaacatggag  17321700                                                                         ==========================HOX2a_HOX2a                                                                         <------ZmHOX2a(2)                                                                        <-----------ARR10                                                                 <------ZmHOX2a(1)                                                                 ================HOX2a_HOX2a                                       ----------->GT1 --------->At4g35610------>ZmHOX2a(2)                                     <---------ZAT2    <---------At4g35610=========================HOX2a_HOX2a                                     --------->At4g35610         ===============HOX2a_HOX2a                                     --------->ZAT2    --------->LBD16  --------->ARR14(2)                                     <---------At4g35610 ----------->RAV1(1)                   <-----                                --------->AtLEC2      --------->ANAC46  <---------ARR14(2)     <-----                           --------->ANAC58          <---------LBD16    <---------ARR11(3)     <-----       <---------ETT(2)    --------->ANAC58          <------NtERF2      --------->ARR11(3)  ------>ZmHOX2a(1) ---------->RAV1(1)        --------->ANAC46         <---------ATERF1(1) <---------AGP1 <---------ANAC58 ---------ALFIN1        <---------ARR14(2)         --------->ARR14(2)   --------->AGP1 <---------ANAC58 ----->PCF2             --------->ARR14(2)         <---------ARR14(2)  <---------CCA1(2)<---------SPL7   tcccacaggtcgactattccaagtcgaatacgccatggaagctgtgaaacaaggctccgcagcaataggactcagatctcgctctcatgtcgtcctcgct  17321800                                                           <---------YAB1                                                ---------->DOF2                                             <----------DOF2                                            ------>ZmHOX2a(2)                                           <---------RVE1(1)                                           <------ZmHOX2a(2)                                          <---------AGP1  --------->ARR11(3)                                          <---------ARR14(2)                                          --------->ARR14(2)                                          --------->ARR14(3)                                          <---------ARR11(3)        <---------REM1(1)              <-      ---------->DOF2                     <---------ARR14(3)        <-----------RAV1(1)   --------->At4g35610 ----ANAC46         <---------ZAT18       --------->ARR11(3)--------->YAB1                <---------At4g35610 ----ANAC58         --------->ZAT14     ----------->ARR10 <---------ARR11(3)   <---------ANAC58    <- ----ANAC58     --------->YAB1    ---------->DOF2        --------->YAB1        <---------ANAC58<-----   tgtgtcaacaaagcacaatcagagctctcttctcatcaaaggaagatctttaaagtcgatgatcatattggtgttgctattgctggtctcactgctgatg  17321900                                   --------->YAB1                                   <-----------GT1                        ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                                 ---------->ID1                       --------->CCA1(2)                               <---------MYB46(3)                      --------->AGP1                                   <------MYB46(1)                      <---------AGP1 <---------ATHB12                  <------MYB83                      --------->ARR14(2)                              <---------AtMYB61                      <---------ARR14(2)                             <---------MYB52(1)                      --------->ARR11(3)            <---------YAB1   <--------P --------ANAC58       <---------ARR11(3)   <----------DOF2         <-----------RAV1(1)             -- --------ANAC58      <---------GLK1(1)<-----------GT1              ------>ZmHOX2a(1)              --- ----AtMYB61    --------->CCA1(2)  --------->WOX13(1)        ------>ZmHOX2a(1)               <-------   gtcgtgttctctctcgatatatgagatctgagtctattaatcactcttttacttatgagtctcctcttcctgttggtcgtcttgttgttcatcttgctga  17322000                                                                                      --------->At4g35610                                                                                     <---------ARR14(2)      ----------->GT1                                                                --------->GLK1(2)    <-----------RAV1(2)        <----------DOF2                                       --------->ARR14(2) ------->DAG2    --------->ARR11(3)                                           --------->ALFIN1 ------->DOF2    <---------ARR11(3)              <---------GLK1(2)          <---------ANAC46 --ANAC46      <---------TOE2(3)            -------->ZAP1---------->DOF2 <---------YAB1   ---------->DOF2   taaagctcaggtaaattgagatttttgggttaacttttgaattttgacctagaatttgctaaagggtttagttttatgatgtgtgagtatctgaaagttt  17322100  Previous    Next  AGI:  At1g47250.1    Description:  PAF2 (20S proteasome alpha subunit F2); peptidase. Identical to Proteasome subunit alpha type-1-B (PAF2) [Arabidopsis Thaliana] (GB:O23712); similar to PAF1 (proteasome alpha subunit F1), peptidase [Arabidopsis thaliana] (TAIR:AT5G42790.1); similar to unknown [Populus trichocarpa] (GB:ABK93062.1); contains InterPro domain Proteasome alpha-subunit, conserved site; (InterPro:IPR000426); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) Range:  from: 17321617    to: 17323514    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.