Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->AHL20(2)                 -------->ATHB1                 <---------ICU4                 --------->YAB1                --------->AHL20(2)                --------->ICU4                             --------->ARR11(3)                <---------AHL20(2)                    --------->YAB1                <---------ATHB51                     <---------YAB1        --------->AHL20(2)                           --------->ICU4        --------->ATHB51                           --------->YAB1        -------->ATHB1                      --------->YAB1 <---------ARR11(3)       <---------ATHB51     --------->MYB46(3)  ----------->GT1       <---------YAB1      ------->TEIL  <---------------AGL15       --------->ICU4<---------AHL20(2)  --------------->AGL15                                   <XXX ---------WOX13(1) <---------YAB1       <---------YAB1-------->HAHB4----------->GT1             -----   taattgacaattattcaaattattatatgaatcaccgaaaatactattagaagtaataatagattttagttagtatatacttaggctatacttgtgaata  17057400                                               ------->TEIL                                    ------     <---------MYB46(3)                  <---------TOE2(3)                                  ---------    --------->ALFIN1       ----------->GT1----------->GT1                                  <---------YAB1 XXXXXXXXXXXXXXXXMIR3434 <---------LBD16 <---------TOE1(3)                       --------->ZAT14 ---->YAB1          --------->ZAT14  <---------At4g35610                         <---------ZAT14 <---   atagaagtggttaagggctcggtatagtccggtttattcatctaaggtgaatctcttggttatttctggtttagtagagtctgtatactatacatgattg  17057500                                                                       <---------YAB1                                                                     --------->YAB1                                                                    <---------YAB1                                                                  ------>ZmHOX2a(1)                                                                 <---------------AGL15                                                                 --------------->AGL15                                                                ----------------->AGL1                                                                ----------------->AGL2                     --------->YAB1                             <-----------------AG                <---------YAB1                                  ----------------->AGL3  <-----------GT1 --------->YAB1              <-----------GT1   <-----------------AGL3            <-- ----->GT1     --------->TOE2(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------TOE2(3)         <--- >ATHB12      <--------HAHB4     <----------DOF2                <-----------------AGL1           <--- ------YAB1  <------ZmHOX2a(2) <---------At4g35610              <-----------------AGL2    <---------At4g35610   taataaactctttggatcattaatgagaaattgagctttcaccatgttttccctctcgttcatggttcctattatggtatcagagcattttctgctcttg  17057600                                                ---------->DOF2                                              <---------MYB52(1)              --------->ATHB12                                              --------->DOF5.7(2) --------->LBD16      --------->GLK1(1)                      --------->At5g28300  ------>ZmHOX2a(1)  --------->At4g35610      <---------GLK1(1)          ---------->ID1 <---------DOF5.7(2)  --------->ARR14(2)          ---- --------DOF2          --------------------->WRI1   --------->ALFIN1 <---------ARR14(2)    <---------ZAT2 ------ANAC58        <---------YAB1       <---------At5g28300    <---------LBD16     <---------At4g35610 ------ANAC58    <---------GLK1(1)       <-----------GT1  ------->TEIL<---------GLK1(1)    <---------At4g35610   cttctctgatttctcatcgatttctcattgttttcttcgtttttcaccgttaaagtgttgaatctatcctggatttgtgttgatttgagctctagctgat  17057700                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                               *TSS                                                                                           --------->GLK1(2)                                                                                          <---------ARR14(2)                               <-------GAMYB                                              <---------GLK1(2)              --------->HSFC1(2)<---------MYB52(1)                                        --------->ARR14(2)          ------>ZmHOX2a(1)   <---------ANAC46                                          ----------->ARR10        ----------->RAV1(2)--------->ARR14(2)<---------At4g35610                      --------->ZAT18   <-----------GT1         <---------ARR14(2)--------->At4g35610 ----------->GT1 ---------->DOF2 <--- ----->YAB1   <---------HSFC1(2)--------->DOF5.7(2)  ------>ZmHOX2a(2)        >>>>>>>>>TBF1--------->ARR14(2)   cagaatcacctcctgaagcttcgattcaagttccgttaacacatttgagcttcgatctctctatccatggtgaaacagaagaagaaagcgcagaatcgga  17057800                                                                   <---------bZIP60(1)             --------------------->WRI1                         ----------->HVH21           --------->At4g35610                          --------->ZAT2        --------->TOE1(2)          <---------ARR11(3)                       --------->ARR14(2)         --------->TOE2(2) <----       ----------->RAV1(1)                         <---------ARR14(2)    --------->WRKY12       <----    --------->HSFB2a(2)                           <---------CCA1(2)--------->bZIP60(1)         <----- -------ARR11(3)      <---------At5g28300  --------->ARR14(2) --------->At4g35610             ------- ------>ARR11(3)     <-----------GT1  <---------At4g35610     <---------At4g35610  <---------CCA1(2) ----->GLK1(1)    <---------ARR14(2)  <---------ZAT2    --------->At4g35610  --------->MYB46(3)------ ------GLK1(1)    --------->ARR14(2)  --------->ZAT2    <---------At4g35610 ------->TEIL   <---------ICU4   gttcttctccaacatctgagtattcaccgatgaagactcgagctggttcttcatatccagttgccgatgacatcgttgaacctccgtctctcaaaattac  17057900                               <------NtERF2 --------->ANAC46                            --------->At4g35610          ------>ZmHOX2a(2) --------->LBD16  --------->ANAC58         <------ZmHOX2a(2)  <---------At4g35610       <---------YAB1 -----RAP2.6(2)            --------->ANAC46  --------->ANAC58                       <------ZmHOX2a(2) -----ANAC46              <---------LBD16   --------->SPL7                         <---------ARR11(3) ----At5g28300      --------->YAB1        --------->TOE1(2)                    <---------At4g35610 -->MYB52(1)       <---------ATHB12       --------->TOE2(2)                  --------->YAB1 <-------- --->RAP2.6(3)   --------->WOX13(1)      --------->YAB1         <---------MYB52(1) --------->ARR11(3)   ggctaatcgcgatcgttttcaatcacattccgcagcgattgaatcatacgacaatgctcatagtccgttcttccttcactcatcagatcatctaggtctg  17058000                                                                                                    =                                                                                                    -                                                                                                   <-                                                                                                   --                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  ---                                --------->REM1(1)                                              <----- -AGP1    <---------TOE1(2)----------->GT1        --------->CCA1(2)  <-------TEIL      <----------DOF2   aatattgtttctcatgttcttgatggaacgagttacaacaattggtctatagctatgcgaatgagtttagatgcaaagaataagttgagctttgttgatg  17058100                                        ------>ZmHOX2a(2)                                       <------ZmHOX2a(2)                                      --------->ARR11(3)                                      --------->ARR14(3)                                      <---------ARR14(2)       ------>ZmHOX2a(1)              --------->ARR14(2)       ==========================HOX2a_HOX2a =============HOX2a_HOX2a             <---------ARR11(3) ----->ZmHOX2a(2)                     <---------ARR14(3) --------GLK1(1)                      --------->GLK1(2) ------->GLK1(1)                      <---------AGP1 -------AGP1                 <---------TOE2(2) -------ARR11(3)             <---------TOE1(2)     <-------TEIL ---->TEIL                ------>ZmHOX2a(2) <---------ANAC46                                   <----- ------>ARR11(3)          ==================HOX2a_HOX2a      ----------->GT1           <---------ANAC46 ----WOX13(1)         <---------ZAT6 <------ZmHOX2a(1)      <---------YAB1          --------->ALFIN1   gatctcttcctaggcctgatgttagtgatcgtatgttcaggatctggagtagatgcaatagtatggttaaaacttggttattgaatgtggtgagtaagga  17058200                                                 ------>ZmHOX2a(2)                                               <---------ARR11(3)                                               --------->ARR11(3)                               <---------At4g35610                                           --------          <---------ZAT14      --------->At4g35610                                           --------    --------->YAB1             <-------GAMYB --------->KAN4(1)                    --------->ANAC58   <---------YAB1           <-------TEIL     <---------KAN4(1)                    --------->ANAC58 -ZmHOX2a(1)         <---------YAB1         <---------KAN4(2) <-------TEIL        --------->ANAC46   gatttatgatagcatactgtattatgaagatgcagttgaaatgtggaatgatctattctcaaggttcagagtgagtaatcttccaaggaagtatcagctt  17058300  Previous    Next  AGI:  At1g45120.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.5e-294 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 17057795    to: 17062195    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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