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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
AHL20(2)
-------->
ATHB1
<---------
ICU4
--------->
YAB1
--------->
AHL20(2)
--------->
ICU4
--------->
ARR11(3)
<---------
AHL20(2)
--------->
YAB1
<---------
ATHB51
<---------
YAB1
--------->
AHL20(2)
--------->
ICU4
--------->
ATHB51
--------->
YAB1
-------->
ATHB1
--------->
YAB1
<---------
ARR11(3)
<---------
ATHB51
--------->
MYB46(3)
----------->
GT1
<---------
YAB1
------->
TEIL
<---------------
AGL15
--------->
ICU4
<---------
AHL20(2)
--------------->
AGL15
<XXX
---------
WOX13(1)
<---------
YAB1
<---------
YAB1
-------->
HAHB4
----------->
GT1
-----
taattgacaattattcaaattattatatgaatcaccgaaaatactattagaagtaataatagattttagttagtatatacttaggctatacttgtgaata
17057400
------->
TEIL
------
<---------
MYB46(3)
<---------
TOE2(3)
---------
--------->
ALFIN1
----------->
GT1
----------->
GT1
<---------
YAB1
XXXXXXXXXXXXXXXX
MIR3434
<---------
LBD16
<---------
TOE1(3)
--------->
ZAT14
---->
YAB1
--------->
ZAT14
<---------
At4g35610
<---------
ZAT14
<---
atagaagtggttaagggctcggtatagtccggtttattcatctaaggtgaatctcttggttatttctggtttagtagagtctgtatactatacatgattg
17057500
<---------
YAB1
--------->
YAB1
<---------
YAB1
------>
ZmHOX2a(1)
<---------------
AGL15
--------------->
AGL15
----------------->
AGL1
----------------->
AGL2
--------->
YAB1
<-----------------
AG
<---------
YAB1
----------------->
AGL3
<-----------
GT1
--------->
YAB1
<-----------
GT1
<-----------------
AGL3
<--
----->
GT1
--------->
TOE2(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
TOE2(3)
<---
>
ATHB12
<--------
HAHB4
<----------
DOF2
<-----------------
AGL1
<---
------
YAB1
<------
ZmHOX2a(2)
<---------
At4g35610
<-----------------
AGL2
<---------
At4g35610
taataaactctttggatcattaatgagaaattgagctttcaccatgttttccctctcgttcatggttcctattatggtatcagagcattttctgctcttg
17057600
---------->
DOF2
<---------
MYB52(1)
--------->
ATHB12
--------->
DOF5.7(2)
--------->
LBD16
--------->
GLK1(1)
--------->
At5g28300
------>
ZmHOX2a(1)
--------->
At4g35610
<---------
GLK1(1)
---------->
ID1
<---------
DOF5.7(2)
--------->
ARR14(2)
----
--------
DOF2
--------------------->
WRI1
--------->
ALFIN1
<---------
ARR14(2)
<---------
ZAT2
------
ANAC58
<---------
YAB1
<---------
At5g28300
<---------
LBD16
<---------
At4g35610
------
ANAC58
<---------
GLK1(1)
<-----------
GT1
------->
TEIL
<---------
GLK1(1)
<---------
At4g35610
cttctctgatttctcatcgatttctcattgttttcttcgtttttcaccgttaaagtgttgaatctatcctggatttgtgttgatttgagctctagctgat
17057700
<--
---
----
*
TSS
--------->
GLK1(2)
<---------
ARR14(2)
<-------
GAMYB
<---------
GLK1(2)
--------->
HSFC1(2)
<---------
MYB52(1)
--------->
ARR14(2)
------>
ZmHOX2a(1)
<---------
ANAC46
----------->
ARR10
----------->
RAV1(2)
--------->
ARR14(2)
<---------
At4g35610
--------->
ZAT18
<-----------
GT1
<---------
ARR14(2)
--------->
At4g35610
----------->
GT1
---------->
DOF2
<---
----->
YAB1
<---------
HSFC1(2)
--------->
DOF5.7(2)
------>
ZmHOX2a(2)
>>>>>>>>>
TBF1
--------->
ARR14(2)
cagaatcacctcctgaagcttcgattcaagttccgttaacacatttgagcttcgatctctctatccatggtgaaacagaagaagaaagcgcaga
atcgga
17057800
<---------
bZIP60(1)
--------------------->
WRI1
----------->
HVH21
--------->
At4g35610
--------->
ZAT2
--------->
TOE1(2)
<---------
ARR11(3)
--------->
ARR14(2)
--------->
TOE2(2)
<----
----------->
RAV1(1)
<---------
ARR14(2)
--------->
WRKY12
<----
--------->
HSFB2a(2)
<---------
CCA1(2)
--------->
bZIP60(1)
<-----
-------
ARR11(3)
<---------
At5g28300
--------->
ARR14(2)
--------->
At4g35610
-------
------>
ARR11(3)
<-----------
GT1
<---------
At4g35610
<---------
At4g35610
<---------
CCA1(2)
----->
GLK1(1)
<---------
ARR14(2)
<---------
ZAT2
--------->
At4g35610
--------->
MYB46(3)
------
------
GLK1(1)
--------->
ARR14(2)
--------->
ZAT2
<---------
At4g35610
------->
TEIL
<---------
ICU4
gttcttctccaacatctgagtattcaccgatgaagactcgagctggttcttcatatccagttgccgatgacatcgttgaacctccgtctctcaaaattac
17057900
<------
NtERF2
--------->
ANAC46
--------->
At4g35610
------>
ZmHOX2a(2)
--------->
LBD16
--------->
ANAC58
<------
ZmHOX2a(2)
<---------
At4g35610
<---------
YAB1
-----
RAP2.6(2)
--------->
ANAC46
--------->
ANAC58
<------
ZmHOX2a(2)
-----
ANAC46
<---------
LBD16
--------->
SPL7
<---------
ARR11(3)
----
At5g28300
--------->
YAB1
--------->
TOE1(2)
<---------
At4g35610
-->
MYB52(1)
<---------
ATHB12
--------->
TOE2(2)
--------->
YAB1
<--------
--->
RAP2.6(3)
--------->
WOX13(1)
--------->
YAB1
<---------
MYB52(1)
--------->
ARR11(3)
ggctaatcgcgatcgttttcaatcacattccgcagcgattgaatcatacgacaatgctcatagtccgttcttccttcactcatcagatcatctaggtctg
17058000
=
-
<-
--
<--
<--
---
---
--------->
REM1(1)
<-----
-
AGP1
<---------
TOE1(2)
----------->
GT1
--------->
CCA1(2)
<-------
TEIL
<----------
DOF2
aatattgtttctcatgttcttgatggaacgagttacaacaattggtctatagctatgcgaatgagtttagatgcaaagaataagttgagctttgttgatg
17058100
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
--------->
ARR14(3)
<---------
ARR14(2)
------>
ZmHOX2a(1)
--------->
ARR14(2)
==========================
HOX2a_HOX2a
=============
HOX2a_HOX2a
<---------
ARR11(3)
----->
ZmHOX2a(2)
<---------
ARR14(3)
--------
GLK1(1)
--------->
GLK1(2)
------->
GLK1(1)
<---------
AGP1
-------
AGP1
<---------
TOE2(2)
-------
ARR11(3)
<---------
TOE1(2)
<-------
TEIL
---->
TEIL
------>
ZmHOX2a(2)
<---------
ANAC46
<-----
------>
ARR11(3)
==================
HOX2a_HOX2a
----------->
GT1
<---------
ANAC46
----
WOX13(1)
<---------
ZAT6
<------
ZmHOX2a(1)
<---------
YAB1
--------->
ALFIN1
gatctcttcctaggcctgatgttagtgatcgtatgttcaggatctggagtagatgcaatagtatggttaaaacttggttattgaatgtggtgagtaagga
17058200
------>
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
At4g35610
--------
<---------
ZAT14
--------->
At4g35610
--------
--------->
YAB1
<-------
GAMYB
--------->
KAN4(1)
--------->
ANAC58
<---------
YAB1
<-------
TEIL
<---------
KAN4(1)
--------->
ANAC58
-
ZmHOX2a(1)
<---------
YAB1
<---------
KAN4(2)
<-------
TEIL
--------->
ANAC46
gatttatgatagcatactgtattatgaagatgcagttgaaatgtggaatgatctattctcaaggttcagagtgagtaatcttccaaggaagtatcagctt
17058300
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AGI:
At1g45120.1
Description:
transposable element gene. copia-like retrotransposon family, has a 1.5e-294 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Range:
from: 17057795
to: 17062195
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.