Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <-----------GT1       --------->AHL20(2)                                                   ---      --------->YAB1    <---------ATHB12                                                        ----- --AHL20(2)          <---------ALFIN1        --------->AHL20(2)                    --------->AHL20(1) >AHL20(2)          --------->MYB46(3)  --------->AHL20(2)         ----------->GT1 <---------AHL20(2) -AHL20(1)        <-----------GT1      --------->AHL20(2)  ------->GAMYB <---------AHL20(2)   <------ -AHL20(2)      <-----------GT1      --------->YAB1      <---------At4g35610       --------->ARR11(3) >AHL20(1) ------>ZmHOX2a(1) <---------AHL20(2)          --------->At4g35610       <---------AHL20(1)   ataaacaattatcctatttttcaccactgatttaaacaaaaataaaaaaaaatactttcaactgaaaaattgtattattttctaaaatattgaaatttac  17052700                  ----------->GT1                                       <---------AHL20(2)             --------->ANAC58                                          <---------AHL20(2)             --------->ANAC58                                          --------->AHL20(2)     ---------->DOF2                                                   --------->ARR11(3)     --------->YAB1  --------->AHL20(2)                                --------->AHL20(1)  --------------->AGL15                                                <---------AHL20(1)  <---------------AGL15   <-------TEIL                 <---------AHL20(2) ------>ANAC46  <-------TEIL                           --------->AHL20(2)          <---------AHL20(2) ---->ZAT6  <---------------AtSPL3              ---------->DOF2        <---------ARR11(3) -----GT1   <---------------AtSPL8     <---------GLK1(2)<---------AHL20(2)      ----------->GT1 -----   actacaataaagagcaagtacgtttaaatacatacaaactagaatatcaacaaagaatttaatatttgatcaatatatttgcaagttaattttgaaaaat  17052800                           --------->AHL20(2)                         ----------->TBP                         <---------AHL20(2)                         --------->AHL20(2)  --------->AHL20(2)                       <---------AHL20(2)----------->TBP                       --------->AHL20(2)<---------AHL20(2)                     <---------AHL20(2)  --------->AHL20(2)                     ----------->TBP   ----------->TBP                     --------->AHL20(2)--------->AHL20(2)                   <---------AHL20(2)<---------AHL20(2)                   ----------->TBP   ----------->TBP                 <---------AHL20(2)----------->TBP                 --------->AHL20(2)--------->AHL20(2)                 ----------->TBP   <---------AHL20(2)               <---------AHL20(2)----------->TBP               --------->AHL20(2)--------->AHL20(2)               <-----------TBP               ----------->TBP   <---------AHL20(2)   <---------AHL20(2)             <---------AHL20(2)<---------AHL20(2)    <---------AHL20(2)             ----------->TBP   ----------->TBP       --------->AHL20(2)           ----------->TBP ----------->TBP ----------->TBP    ----------->GT1           --------->AHL20(2)<---------AHL20(2)   --------->AHL20(2)          <---------AHL20(1) ----------->TBP <---------AHL20(2)   --------->AHL20(2)          --------->AHL20(1) --------->AHL20(2)  --------->AHL20(2)                <---------ZAT6         --------->AHL20(2)<---------AHL20(2)----------->TBP<---------ANAC58   <---------YAB1     --------->AHL20(2)----------->TBP <---------AHL20(2)   <---------ANAC58 --------->YAB1     -----  <------------CBF --------->AHL20(2)--------->AHL20(2)     <---------ANAC46--------->ICU4     ------ ---->RVE1(1)--------->AHL20(2)--------->AHL20(2)<---------AHL20(2)    ----------->GT1  ----------->GT1   atcacattgaaatatatatatatatatatatatatatatatatatatataaataaataaatggcgagtttatatagtaaacatgagtgtaagggaaatat  17052900                                                   --------->TOE2(3)                                                  <---------ANAC55(2)        <---------AHL20(2)                                                --------->AHL20(2)         <---------YAB1                         ---------->DOF2     <---------ICU4             <---------YAB1  ---------->DOF2           <---------ANAC46            <------------CBF                 <---------AHL20(2)           <---------AtLEC2          --------->AHL20(2)             ------>MYB46(1)  <---------------AGL15   <------------CBF  <----------DOF2 <---------AHL20(2)             ------>MYB83   <-----------GT1 ---->CCA1(2)    <---------GLK1(1)   --------->AHL20(1)<---------ARR11(3) <---------AHL20(1)      <-- --->AHL20(1)    --------->GLK1(1)  --------->AHL20(2) --------->ARR11(3) <---------AHL20(2)      ---   atgaaaattggtttcatggatttctttgaaagaaaaaaaaaaattgagaattacataaatcttgctaaccaaatattattttttttaacaaaaagagtat  17053000                                                                                               <-----                                                                                              <------NtERF2                                                                                              ------>NtERF2                                                                                              <------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             --------                               --------->LBD16    <---------MYB52(1)                         --------                              --------->ANAC46 <------NtERF2                                ---------                              --------->LBD16 ------>NtERF2                                 ---------               --------->MYB46(3)            <---------DEAR3(1)                    --------->ANAC58    --------->DOF5.7(2)      --------->LBD16 --------->DEAR3(1)                 <---------STY1(2)   --------->TOE2(3)         <---------LBD16--------->ATERF1(1)               <---------HSFB2a(2)   <----------DOF2      --------->ZAT2      <------NtERF2                     >>>>>>>ZML2  <---------ATERF1(1)   --------->TOE1(3)    <---------At4g35610<---------ATERF1(1)                --------->HSFB2a(2)---- -------AHL20(2)        --------->At4g35610<-----------HVH21        --------->AtLEC2   --------->ARR14(2) ------>AHL20(2)        <---------ZAT2    --------->DEAR3(1)      <---------AtLEC2 --------->ANAC58   ttaaactttaactttgaacaaaccctagctccccggaaaataagccgtcgccgttttcatcttcttctccatggagagttctagcaaggaatcggccgcc  17053100 -NtERF2 ---RAP2.6(3) ->RAP2.3(3) ->DREB2C(2) ->RAP2.6(2) ->RAP2.3(2) ->DEAR3(1) --ATERF1(2)                  --------->At4g35610 ->ATERF1(2)                  <---------ZAT2 ->ANAC58                     <---------At4g35610       <---------LBD16 ->ANAC58                  <---------MYB52(1)    <---------DAG2         <---------HSFC1(2) ->RRTF1(2)                <------NtERF2      ------>MYB46(1)           --------->HSFC1(2)     ------ >RAP2.3(1)         ---------->DOF2           ------>MYB83           <------ZmHOX2a(1)      --------- >SPL7 --------->ATHB12   --------->LBD16   <---------MYB59<------ZmHOX2a(1)           <------ZmHOX2a(1) ------>DOF2  <--------P<---------LBD16     --------->AtMYB61  --------->YAB1    <------ZmHOX2a(1)  <   aaagttgttcgattgggtaagcgaaagccggaagctgatttggagaccaaaccttttctcaggaaacataaggaaacgtctgaggagaaggagacaacgg  17053200                                                                      --------->ARR14(2)                                                                      <---------ARR14(2)                                                                     <---------CCA1(2)      <---------ANAC58                                    ---------->DOF2      <---------ANAC58                                   <---------MYB52(1)      <---------ANAC46                                  --------->LBD16      <---------AtLEC2                                 <---------ANAC55(2)  <---------GLK1(1)                                    <---------ANAC58  --------->GLK1(1)                                    <---------ANAC58 --------->ARR14(2)                      <---------At4g35610     <----------DOF2 <---------ARR14(2)           --------->GLK1(2)        --------->HSFB2a(2)              --------->ANAC58 ->GAMYB                   <---------ARR11(3)          --------->ANAC46                 --------->ANAC58 >MYB52(1)   <---------ZAT6--------->ARR11(3)          --------->ANAC55(2)  --------->ZAT2 ------ZmHOX2a(1)    ----------->RAV1(1) --------->At4g35610 ------->GAMYB  <---------ZAT2   aaggatttgcttgtagtcttgagcaacaagataatctaatctcagcgaaggctgtttccgtaacgctctttgtatccgagctctctaggcaaacaaaaat  17053300                                                                              <---------ANAC58                                                                         <---------MYB46(3)                                                                         <-----------RAV1(1)                                                                 --------->ANAC58                                                                 --------->ANAC58                                                                 --------->ANAC46                                                                <---------LBD16                                                               <---------ALFIN1                                                             ----------->RAV1(1)      <---------ANAC58                 <---------ZAT14                          --------->ANAC58    <---------ANAC46     <---------YAB1                                   <---------ANAC58 <---------ZAT2 <---------ANAC58    --------->ARR11(3)                                <---------ANAC58 <---------At4g35610   --------->GLK1(1)                     <---------TOE1(3)--------->ANAC46    <---------ANAC58   <---------GLK1(1)         <---------HSFB2a(2) <---------ARR14(2)    --------->At4g35610  <---------ARR11(3)    <---------REM1(1)<---------TOE2(3)--------->ANAC58 <---------MYB52(1)  --------->ARR11(3)    <-----------RAV1(1)      --------->ARR14(2)   --------->GLK1(2)<----------DOF2   ttcagatatcatcgatttcttcagtgatgttggagaagttgttaatgttcgaatttgcttaagccacacgggaagctgttgcgttctggctttgttgagt  17053400                               ---------->DOF2                     --------->ANAC58                     --------->ANAC58                <---------AtLEC2     ---------->DOF2                 --------->ANAC58               <---------ARR14(2)--------->GLK1(1)                 --------->ANAC58               --------->ARR14(2)<---------GLK1(1)         <-------TEIL  <---------At4g35610--------->ANAC46    ----------->GT1  <------ZmHOX2a(2)      <---------ANAC46  --   tttcttctgctagtgaggcaaacaaggcactggaaaagaagaatggtgaatatttgcacgatcaagagatttctcttaaagttgctcagacaagtccata  17053500               <---------AtLEC2      --------->YAB1     <---------ATHB12                                                                     ------>ZmHOX2a(1)   --------->WOX13(1)                                  --------->STY1(2)                ----------->RAV1(2) ------->ORA47(1)                             <----------DOF2   <-----------HVH21  <---------ALFIN1   ccgtccaatcaagttttgcatcgagcacaaggtttggaaccaagactcctttcaactagatagccttgtcatcgaagaagatgagacacctcctgatttt  17053600  Previous    Next  AGI:  At1g45100.1    Description:  polyadenylate-binding protein, putative / PABP, putative. similar to RNA binding [Arabidopsis thaliana] (TAIR:AT5G41690.1); similar to poly(A)-binding protein [Nicotiana tabacum] (GB:AAF66823.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 17053071    to: 17054629    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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