Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<-----------
GT1
--------->
AHL20(2)
---
--------->
YAB1
<---------
ATHB12
-----
--
AHL20(2)
<---------
ALFIN1
--------->
AHL20(2)
--------->
AHL20(1)
-
AHL20(1)
--------->
MYB46(3)
--------->
AHL20(2)
----------->
GT1
--------->
ARR11(3)
-
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
------->
GAMYB
<---------
AHL20(2)
<------
>
AHL20(1)
<-----------
GT1
--------->
YAB1
<---------
At4g35610
<---------
AHL20(2)
>
AHL20(2)
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------->
At4g35610
<---------
AHL20(1)
ataaacaattatcctatttttcaccactgatttaaacaaaaataaaaaaaaatactttcaactgaaaaattgtattattttctaaaatattgaaatttac
17052700
----------->
GT1
<---------
AHL20(2)
--------->
ANAC58
<---------
AHL20(1)
--------->
ANAC58
--------->
AHL20(2)
---------->
DOF2
--------->
AHL20(1)
--------->
YAB1
--------->
AHL20(2)
--------->
ARR11(3)
--------------->
AGL15
<---------
AHL20(2)
<---------------
AGL15
<-------
TEIL
--------->
AHL20(2)
------>
ANAC46
<-------
TEIL
<---------
AHL20(2)
<---------
AHL20(2)
---->
ZAT6
<---------------
AtSPL8
---------->
DOF2
<---------
ARR11(3)
-----
GT1
<---------------
AtSPL3
<---------
GLK1(2)
<---------
AHL20(2)
----------->
GT1
-----
actacaataaagagcaagtacgtttaaatacatacaaactagaatatcaacaaagaatttaatatttgatcaatatatttgcaagttaattttgaaaaat
17052800
--------->
AHL20(2)
<---------
AHL20(2)
----------->
TBP
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
----------->
TBP
--------->
AHL20(2)
<---------
AHL20(2)
----------->
TBP
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
----------->
TBP
----------->
TBP
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
----------->
TBP
<---------
AHL20(2)
<---------
AHL20(2)
<-----------
TBP
----------->
TBP
--------->
AHL20(2)
----------->
GT1
----------->
TBP
<---------
AHL20(2)
<---------
ANAC58
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
----------->
TBP
<---------
AHL20(2)
----------->
TBP
<---------
ANAC58
--------->
AHL20(1)
----------->
TBP
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ZAT6
--------->
AHL20(2)
----------->
TBP
----------->
TBP
<---------
ANAC46
<---------
YAB1
--------->
AHL20(2)
----------->
TBP
----------->
TBP
<---------
AHL20(2)
--------->
YAB1
-----
<------------
CBF
----------->
TBP
----------->
TBP
--------->
AHL20(2)
--------->
ICU4
------
---->
RVE1(1)
--------->
AHL20(2)
----------->
TBP
--------->
AHL20(2)
----------->
GT1
----------->
GT1
atcacattgaaatatatatatatatatatatatatatatatatatatataaataaataaatggcgagtttatatagtaaacatgagtgtaagggaaatat
17052900
--------->
TOE2(3)
<---------
ANAC55(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
---------->
DOF2
<---------
ICU4
<---------
YAB1
---------->
DOF2
<---------
AtLEC2
<------------
CBF
<---------
AHL20(2)
<---------
ANAC46
--------->
AHL20(2)
------>
MYB83
<---------------
AGL15
<------------
CBF
<----------
DOF2
--------->
AHL20(1)
------>
MYB46(1)
<-----------
GT1
---->
CCA1(2)
--------->
GLK1(1)
<---------
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(2)
<--
--->
AHL20(1)
<---------
GLK1(1)
--------->
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(1)
---
atgaaaattggtttcatggatttctttgaaagaaaaaaaaaaattgagaattacataaatcttgctaaccaaatattattttttttaacaaaaagagtat
17053000
<-----
<------
NtERF2
------>
NtERF2
<------
--------
--------
--------
--------
--------
--------
--------
--------
--------
--------->
LBD16
<---------
MYB52(1)
<-------
--------->
ANAC46
<------
NtERF2
---------
--------->
LBD16
------>
NtERF2
---------
--------->
MYB46(3)
--------->
DEAR3(1)
--------->
ANAC58
--------->
DOF5.7(2)
--------->
LBD16
<---------
DEAR3(1)
<---------
STY1(2)
--------->
TOE2(3)
<---------
LBD16
--------->
ATERF1(1)
>>>>>>>
ZML2
<---------
ATERF1(1)
--------->
TOE1(3)
<---------
ZAT2
<------
NtERF2
<---------
HSFB2a(2)
<----------
DOF2
--------->
ZAT2
--------->
DEAR3(1)
--------->
HSFB2a(2)
----
-------
AHL20(2)
--------->
At4g35610
<-----------
HVH21
--------->
AtLEC2
--------->
ARR14(2)
------>
AHL20(2)
<---------
At4g35610
<---------
ATERF1(1)
<---------
AtLEC2
--------->
ANAC58
ttaaactttaactttgaacaaaccctagctccccggaaaataagccgtcgccgttttcatcttcttctcc
atggagagttctagcaaggaatcggccgcc
17053100
-
NtERF2
---
RAP2.6(3)
->
RAP2.6(2)
->
RAP2.3(2)
->
DREB2C(2)
->
RAP2.3(3)
->
DEAR3(1)
->
ANAC58
<---------
At4g35610
->
ATERF1(2)
--------->
At4g35610
->
ANAC58
<---------
ZAT2
<---------
LBD16
->
RRTF1(2)
<------
NtERF2
<---------
DAG2
--------->
HSFC1(2)
--
ATERF1(2)
<---------
MYB52(1)
------>
MYB83
<---------
HSFC1(2)
------
>
SPL7
--------->
ATHB12
--------->
LBD16
------>
MYB46(1)
<------
ZmHOX2a(1)
---------
>
RAP2.3(1)
---------->
DOF2
<---------
MYB59
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
------>
DOF2
<--------
P
<---------
LBD16
--------->
AtMYB61
--------->
YAB1
<------
ZmHOX2a(1)
<
aaagttgttcgattgggtaagcgaaagccggaagctgatttggagaccaaaccttttctcaggaaacataaggaaacgtctgaggagaaggagacaacgg
17053200
--------->
ARR14(2)
<---------
ARR14(2)
<---------
CCA1(2)
<---------
AtLEC2
---------->
DOF2
<---------
ANAC58
<---------
MYB52(1)
<---------
ANAC46
--------->
LBD16
<---------
ANAC58
--------->
ANAC46
--------->
GLK1(1)
<---------
ANAC58
<---------
GLK1(1)
--------->
HSFB2a(2)
--------->
ARR14(2)
--------->
At4g35610
<----------
DOF2
<---------
ARR14(2)
--------->
GLK1(2)
<---------
ANAC55(2)
--------->
ANAC58
->
GAMYB
--------->
ARR11(3)
<---------
ANAC58
--------->
ANAC58
>
MYB52(1)
<---------
ZAT6
<---------
ARR11(3)
--------->
ANAC55(2)
--------->
ZAT2
------
ZmHOX2a(1)
----------->
RAV1(1)
<---------
At4g35610
------->
GAMYB
<---------
ZAT2
aaggatttgcttgtagtcttgagcaacaagataatctaatctcagcgaaggctgtttccgtaacgctctttgtatccgagctctctaggcaaacaaaaat
17053300
<---------
ANAC58
<---------
MYB46(3)
<-----------
RAV1(1)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<---------
LBD16
<---------
ALFIN1
----------->
RAV1(1)
<---------
ANAC58
<---------
ZAT14
--------->
ANAC58
<---------
ANAC46
<---------
YAB1
<---------
ANAC58
--------->
At4g35610
--------->
ARR11(3)
<---------
ANAC58
<---------
ZAT2
<---------
ANAC58
<---------
GLK1(1)
<---------
TOE2(3)
--------->
ANAC58
<---------
ANAC58
--------->
GLK1(1)
<---------
HSFB2a(2)
<---------
ARR14(2)
<---------
At4g35610
<---------
ARR11(3)
<-----------
RAV1(1)
--------->
ARR14(2)
--------->
GLK1(2)
<----------
DOF2
--------->
ARR11(3)
<---------
REM1(1)
<---------
TOE1(3)
--------->
ANAC46
<---------
MYB52(1)
ttcagatatcatcgatttcttcagtgatgttggagaagttgttaatgttcgaatttgcttaagccacacgggaagctgttgcgttctggctttgttgagt
17053400
---------->
DOF2
--------->
ANAC46
--------->
ANAC58
<---------
AtLEC2
---------->
DOF2
--------->
ANAC58
--------->
ARR14(2)
<---------
GLK1(1)
--------->
ANAC58
<---------
ARR14(2)
--------->
GLK1(1)
<-------
TEIL
<---------
At4g35610
--------->
ANAC58
----------->
GT1
<------
ZmHOX2a(2)
<---------
ANAC46
--
tttcttctgctagtgaggcaaacaaggcactggaaaagaagaatggtgaatatttgcacgatcaagagatttctcttaaagttgctcagacaagtccata
17053500
<---------
AtLEC2
--------->
YAB1
<---------
ATHB12
------>
ZmHOX2a(1)
--------->
WOX13(1)
--------->
STY1(2)
----------->
RAV1(2)
------->
ORA47(1)
<----------
DOF2
<-----------
HVH21
<---------
ALFIN1
ccgtccaatcaa
gttttgcatcgagcacaaggtttggaaccaagactcctttcaactagatagccttgtcatcgaag
aagatgagacacctcctgatttt
17053600
Previous
Next
AGI:
At1g45100.1
Description:
polyadenylate-binding protein, putative / PABP, putative. similar to RNA binding [Arabidopsis thaliana] (TAIR:AT5G41690.1); similar to poly(A)-binding protein [Nicotiana tabacum] (GB:AAF66823.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 17053071
to: 17054629
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.