Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------GAMYB                                                                                            <------MYB46(1)                                                                                            <--------                                                                                            <------MYB83                                                                                            ---------                                                                                         <-------GAMYB                                                                                        --------->MYB55(2)                                                                                    <---------ANAC58                                                                                    <---------ANAC46                                                                                <---------ANAC58                                                                                <---------ANAC58        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <---------ARR14(3)       <------MYB46(1)                                                        --------->ARR14(3)       <------MYB83                                                           --------->ARR11(3)   <---------ARR14(2)                            <---------ANAC58             <---------ARR11(3)  <--   --------->ARR14(2)              <---------------AGL15               ----------->HVH21<-----------RAV1(1) ---->MYB46(1)          --------->ZAT18       --------->DAG2         --------->At4g35610--------->MYB52(2) ------>P              <------ZmHOX2a(1)    ---------->DOF2          <---------At4g35610<---------MYB46(3) ------->MYB52(1)   --------->YAB1 --------->YAB1<---------ANAC58  <-----------RAV1(2)<---------MYB52(1) ---->MYB83--------->MYB52(2)      --------------->AGL15         <-----------HVH21  <---------ANAC58   ctaccgatttggttcgatgctatgaggacaccatctacaataagtagaaaggcgagcctaagtttgtggtcagatgacaaggtcttgcgtttgttggtta  15880200                                                                                                   --                                                                                                   ==                                                                                                   --                                                                                                 ----                                                                                              -------                                                                                       --------->YAB1        <-------TEIL                                                                  <------ZmHOX2a(2)      <---------ARR14(2)                                                              ===============      --------->ARR14(2) ------->GAMYB                                               --------->ARR14(2)   <---------ANAC46   --------->MYB52(1)             <---------HSFB2a(2) ----------->RAV1(1)--------- -MYB46(3)        <---------TOE2(3)                  --------->HSFB2a(2) ============================ >MYB55(2)        <---------TOE1(3)         <-----------GT1             --------->MYB46(3)  --------- -------AtLEC2  --------->STY1(1)          --------->AHL20(2)     --------->AtLEC2   <---------ARR14(2)   gcatggcatatacatcccctaaggtaacagtcttgtttagactaattaactcgttccagtaactcttcatgccaacaacaaaaatcggatcatcatctgg  15880300                                          --------->ANAC58                                      <---------TGA1a                                      --------->TGA1a                                      <---------O2                                      ================================bZIP_DOF                                      <---------bZIP60(1)                                      --------->ANAC46                                      --------->ANAC55(1)                                      --------->ANAC55(2)                                      <---------ANAC55(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->TOE2(3)               --------->O2                                   <---------ICU4 ------->YAB1                         --------->ANAC58                            ------>MYB83 <----- =============HOX2a_HOX2a         <-----------HVH21               --------->ATHB12------>MYB46(1)   - ---->ZmHOX2a(2)             --------->ANAC58                    <---------YAB1 <---------MYB111(1) < ----->ARR14(2)              --------->ANAC58       --------->ANAC55(2)        --------->ANAC46<----- -->HSFB2a(2)               --------->WOX13(1)      --------->ANAC58   <---------ANAC58        ------ =============HOX2a_HOX2a   --------->GLK1(1)       --------->ANAC46   <---------ANAC46   --------->ETT(2) -->RAV1(2)         <---------ALFIN1  --------->ANAC58   <---------YAB1<---------ANAC58   --------->ZAT18 ===RAV------>ZmHOX2a(1)  <---------ZAT18 --------->ANAC58 ---------->DOF2  --------->ZAT18  -------- >At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ANAC58  <---------MYB46(3)  <---------ETT(2)   atcgtaatcctcagaaaactcaccacagggcaatccagtcacgtaagcaaattcaagtaatgaaagtctcattgggtgtccaccaaataatgtccacagc  15880400                                                     <---------ETT(1)                                                     ----------->HVH21                                                     --------->ANAC46      <-----------GT1                               --------->MYB46(3) <---------ICU4       ------>NtERF2           --------->At4g35610           --------->At5g28300 ----ZAT2          <---------At4g35610   --------->YAB1                 --------->MYB52(1) -------->ICU4     --------->At4g35610 --------->ANAC58                 -------->P ---------YAB1     --------->ZAT2      --------->ANAC58                --------->MYB52(1) ----At4g35610     <---------ZAT2      --------->AtLEC2       <---------ZAT18                    ---- --->At4g35610<-----------GT1     --------->ANAC58 <-----------------AGL1   <---------MYB52(1)   ---- ->ANAC46<----------DOF2          --------->ANAC58-------->P<---------ZAT18----------->GT1     ------   tcataatttttctttgttaccagctgcctacatagcaaggcatgcataagcttacccgacatcgcacacttactaaccggtaaatggaatagaggtccaa  15880500                                                                <---------ARR11(3)                                                                --------->ARR11(3)                                                                --------->GLK1(2)                                                                <---------ARR14(2)                                                        <------ZmHOX2a(1)                                                      <---------TOE2(3)                                                    ---------->DOF2                                                --------->LBD16 --------->ARR14(2)                                               --------->HSFB2a(2)                                               <---------HSFB2a(2)                                               <---------------AGL15                  <-----------GT1                                               --------------->AGL15                 <-----------GT1                                              ----------------->AGL3       <---------ANAC46  --------->ATHB12                           ------>MYB46(1)    <-----------ARR10<---------AHL20(2) ----->ANAC58                             --------->HSFB2a(1)  --------->RVE1(1)<---------AHL20(1)  - ----->ANAC58                 ---------->ID1 ------>MYB83      <---------GLK1(1)<---------ARR11(3)  - ---->DOF2                <----------DOF2 <---------HSFB2a(1)<---------GLK1(2)  --------->ARR11(3)  <   agcaagattgaagaatgaaatctaattcctttgtcccatgaaaaaccttccagataaaggatagaatatctggtcttgagtatatatttagccttcccct  15880600                                                                      <---------WRKY18(1)                                                                     --------->WRKY12                                                                     ----------->HVH21              <---------ANAC46                                       --------->WRKY45             <------NtERF2                                           --------->WRKY38(1)            ------>NtERF2                                           --------->DOF5.7(2)           --------->ALFIN1                                  --------->LBD16           <---------DEAR3(1)                                ------>ZmHOX2a(1)        ============================HOX2a_HOX2a             --------->TOE1(2)        ------>ZmHOX2a(2)                                  ----------->RAV1(2)           --------->CCA1(2)        <---------DEAR3(1)                             --------->HSFB2a(1)             <---------MYB52(2)     --------->ATHB12                                  <---------HSFC1(2)             --------->ANAC58 -------->ARR14(2)                     ------->TEIL    <---------HSFB2a(1)            --------->ANAC58 -------->ARR11(3)                  <---------YAB1     <---------MYB46(3)       --------->ICU4     <- ---------ARR14(2)       *TSS<------ZmHOX2a(1)         --------->HSFC1(2)   <-----------HVH21   <----   cggatattgatcggtggcgaagagtctattaggaagttatgaatcacactgagaagatggttcctgagacgttgaccctgtcattagcaagaaacgagtt  15880700                                                                                                  <--                                                                                                  <--                                                                      <---------ANAC46            ---       <---------TOE1(3)                                              <---------ANAC58       <-------       <---------TOE2(3)                                              <---------ANAC58       --------       <---------YAB1          <------ZmHOX2a(2)                  <---------ANAC58           -------- --------At4g35610           <------ZmHOX2a(1)                    <---------ANAC46 --------->MYB52(1) -----ZAT14      --------->MYB52(1)         --------->ARR14(2)    <---------ANAC58 <-----------GT1---   cagaagattaagattagattaacagataataggatcaaataaaacgaattcacaaacgtctgtctattgcttgcttagattagattaacagattaagagt  15880800           --------->MYB52(1)        <---------ANAC58        <---------ANAC55(2) ------>MYB83 ------>MYB46(1) -------HSFC1(2) -------HSFB2a(1)                                                                  ----------->GT1 ------>HSFB2a(1)                    <---------GLK1(1)                          --------->MYB52(1) --------AtSPL8                     --------->ARR11(3)                      --------->ZAT6          < ->ZAT6 <---------ANAC58           --------->YAB1                      ------>ZmHOX2a(1)            - ------->AtSPL8                   <---------ATHB12                 --------->ARR14(2)          ------ ------>HSFC1(2)          ---------->ARF1                          <---------ARR14(2)         <------   accttccatagcgtaacagaataaacttgtctgccaatgatatcggtttagtcgaaaaattgtcttccaaatcctataacacaaacagataaactcatca  15880900                                                 ------>ZmHOX2a(2)                                                <---------RVE1(1)                                               --------->ARR14(3)                                               <-----------ARR10                                               --------->ARR11(3)                                               --------->AGP1                                               <---------AGP1                                               --------->ARR14(2)                         ----------->GT1       <---------ARR11(3)                --------->CCA1(2)  <-----------GT1<----------DOF2    <-----------HVH21  ---------->DOF2         <---------ARR14(2) --------->CCA1(2)   ===================================HOX2a_HOX2a                                 - ---------ARR11(3)   <------ZmHOX2a(1)         <---------ARR14(3)                                  <- -------->ARR11(3)   ==================================HOX2a_HOX2a                               ---- --->YAB1      --------->ARR11(3) <---------YAB1<------ZmHOX2a(2)                   <---------ARR14(2) ---YAB1--------->At4g35610     --------->YAB1<---------CCA1(2)                     --------->ARR14(2)   tagatatgtcagcaatagatataggaaaagaaaattataactatatgcagatcttttttataaaaaaaacaagtctaaatttgaagtatatggttttgtc  15881000                                         <---------ARR11(3)                                 ------>ZmHOX2a(1)                                <---------------AGL15                          --------->ANAC55(2)                          <---------ANAC55(2)                          <---------ANAC58                          <---------ANAC55(1)          ----------->GT1 <---------ANAC58          <---------MYB46(3)    --------->TOE2(3)<---------MYB52(1)          --------->MYB52(2)   ----------------->AG                  ---------->DOF2       ------------>MYB.PH3(2) ----------------->AGL1              --------->ANAC46 -------->YAB1          <-----------GT1--------->ANAC58            --------->ANAC58 --------ATHB12     --------->AHL20(2) --------->ANAC58            --------->ANAC58 ----->WOX13(1)    <---------ATHB12    --------->ANAC46  <-----------GT1   aatcaaatgagtttgttacaaatgaattacgtttcctaaacaagacattcccttgttttttactgaaatacgaaagaaaactaaacaatgaaacaataga  15881100  Previous    Next  AGI:  At1g42420.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 15875739    to: 15880625    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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