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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-------
GAMYB
<------
MYB46(1)
<--------
<------
MYB83
---------
<-------
GAMYB
--------->
MYB55(2)
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
ARR14(3)
<------
MYB46(1)
--------->
ARR14(3)
<------
MYB83
--------->
ARR11(3)
<---------
ARR14(2)
<---------
ANAC58
<---------
ARR11(3)
<--
--------->
ARR14(2)
<---------------
AGL15
----------->
HVH21
<-----------
RAV1(1)
---->
MYB46(1)
--------->
ZAT18
--------->
DAG2
--------->
At4g35610
--------->
MYB52(2)
------>
P
<------
ZmHOX2a(1)
---------->
DOF2
<---------
At4g35610
<---------
MYB46(3)
------->
MYB52(1)
--------->
YAB1
--------->
YAB1
<---------
ANAC58
<-----------
RAV1(2)
<---------
MYB52(1)
---->
MYB83
--------->
MYB52(2)
--------------->
AGL15
<-----------
HVH21
<---------
ANAC58
ctaccgatttggttcgatgctatgaggacaccatctacaataagtagaaaggcgagcctaagtttgtggtcagatgacaaggtcttgcgtttgttggtta
15880200
--
==
--
----
-------
--------->
YAB1
<-------
TEIL
<------
ZmHOX2a(2)
<---------
ARR14(2)
===============
--------->
ARR14(2)
------->
GAMYB
--------->
ARR14(2)
<---------
ANAC46
--------->
MYB52(1)
<---------
HSFB2a(2)
----------->
RAV1(1)
---------
-
MYB46(3)
<---------
TOE2(3)
--------->
HSFB2a(2)
============================
>
MYB55(2)
<---------
TOE1(3)
<-----------
GT1
--------->
MYB46(3)
---------
-------
AtLEC2
--------->
STY1(1)
--------->
AHL20(2)
--------->
AtLEC2
<---------
ARR14(2)
gcatggcatatacatcccctaaggtaacagtcttgtttagactaattaactcgttccagtaactcttcatgccaacaacaaaaatcggatcatcatctgg
15880300
--------->
ANAC58
<---------
TGA1a
--------->
TGA1a
<---------
O2
================================
bZIP_DOF
<---------
bZIP60(1)
--------->
ANAC46
--------->
ANAC55(1)
--------->
ANAC55(2)
<---------
ANAC55(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
TOE2(3)
--------->
O2
<---------
ICU4
------->
YAB1
--------->
ANAC58
------>
MYB83
<-----
=============
HOX2a_HOX2a
<-----------
HVH21
--------->
ATHB12
------>
MYB46(1)
-
---->
ZmHOX2a(2)
--------->
ANAC58
<---------
YAB1
<---------
MYB111(1)
<
----->
ARR14(2)
--------->
ANAC58
--------->
ANAC55(2)
--------->
ANAC46
<-----
-->
HSFB2a(2)
--------->
WOX13(1)
--------->
ANAC58
<---------
ANAC58
------
=============
HOX2a_HOX2a
--------->
GLK1(1)
--------->
ANAC46
<---------
ANAC46
--------->
ETT(2)
-->
RAV1(2)
<---------
ALFIN1
--------->
ANAC58
<---------
YAB1
<---------
ANAC58
--------->
ZAT18
===
RAV
------>
ZmHOX2a(1)
<---------
ZAT18
--------->
ANAC58
---------->
DOF2
--------->
ZAT18
--------
>
At4g35610
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
ANAC58
<---------
MYB46(3)
<---------
ETT(2)
atcgtaatcctcagaaaactcaccacagggcaatccagtcacgtaagcaaattcaagtaatgaaagtctcattgggtgtccaccaaataatgtccacagc
15880400
<---------
ETT(1)
----------->
HVH21
--------->
ANAC46
<-----------
GT1
--------->
MYB46(3)
<---------
ICU4
------>
NtERF2
--------->
At4g35610
--------->
At5g28300
----
ZAT2
<---------
At4g35610
--------->
YAB1
--------->
MYB52(1)
-------->
ICU4
--------->
At4g35610
--------->
ANAC58
-------->
P
---------
YAB1
--------->
ZAT2
--------->
ANAC58
--------->
MYB52(1)
----
At4g35610
<---------
ZAT2
--------->
AtLEC2
<---------
ZAT18
----
--->
At4g35610
<-----------
GT1
--------->
ANAC58
<-----------------
AGL1
<---------
MYB52(1)
----
->
ANAC46
<----------
DOF2
--------->
ANAC58
-------->
P
<---------
ZAT18
----------->
GT1
------
tcataatttttctttgttaccagctgcctacatagcaaggcatgcataagcttacccgacatcgcacacttactaaccggtaaatggaatagaggtccaa
15880500
<---------
ARR11(3)
--------->
ARR11(3)
--------->
GLK1(2)
<---------
ARR14(2)
<------
ZmHOX2a(1)
<---------
TOE2(3)
---------->
DOF2
--------->
LBD16
--------->
ARR14(2)
--------->
HSFB2a(2)
<---------
HSFB2a(2)
<---------------
AGL15
<-----------
GT1
--------------->
AGL15
<-----------
GT1
----------------->
AGL3
<---------
ANAC46
--------->
ATHB12
------>
MYB46(1)
<-----------
ARR10
<---------
AHL20(2)
----->
ANAC58
--------->
HSFB2a(1)
--------->
RVE1(1)
<---------
AHL20(1)
-
----->
ANAC58
---------->
ID1
------>
MYB83
<---------
GLK1(1)
<---------
ARR11(3)
-
---->
DOF2
<----------
DOF2
<---------
HSFB2a(1)
<---------
GLK1(2)
--------->
ARR11(3)
<
agcaagattgaagaatgaaatctaattcctttgtcccatgaaaaaccttccagataaaggatagaatatctggtcttgagtatatatttagccttcccct
15880600
<---------
WRKY18(1)
--------->
WRKY12
----------->
HVH21
<---------
ANAC46
--------->
WRKY45
<------
NtERF2
--------->
WRKY38(1)
------>
NtERF2
--------->
DOF5.7(2)
--------->
ALFIN1
--------->
LBD16
<---------
DEAR3(1)
------>
ZmHOX2a(1)
============================
HOX2a_HOX2a
--------->
TOE1(2)
------>
ZmHOX2a(2)
----------->
RAV1(2)
--------->
CCA1(2)
<---------
DEAR3(1)
--------->
HSFB2a(1)
<---------
MYB52(2)
--------->
ATHB12
<---------
HSFC1(2)
--------->
ANAC58
-------->
ARR14(2)
------->
TEIL
<---------
HSFB2a(1)
--------->
ANAC58
-------->
ARR11(3)
<---------
YAB1
<---------
MYB46(3)
--------->
ICU4
<-
---------
ARR14(2)
*
TSS
<------
ZmHOX2a(1)
--------->
HSFC1(2)
<-----------
HVH21
<----
cggatattgatcggtggcgaagagt
ctattaggaagttatgaatcacactgagaagatggttcctgagacgttgaccctgtcattagcaagaaacgagtt
15880700
<--
<--
<---------
ANAC46
---
<---------
TOE1(3)
<---------
ANAC58
<-------
<---------
TOE2(3)
<---------
ANAC58
--------
<---------
YAB1
<------
ZmHOX2a(2)
<---------
ANAC58
--------
--------
At4g35610
<------
ZmHOX2a(1)
<---------
ANAC46
--------->
MYB52(1)
-----
ZAT14
--------->
MYB52(1)
--------->
ARR14(2)
<---------
ANAC58
<-----------
GT1
---
cagaagattaagattagattaacagataataggatcaaataaaacgaattcacaaacgtctgtctattgcttgcttagattagattaacagattaagagt
15880800
--------->
MYB52(1)
<---------
ANAC58
<---------
ANAC55(2)
------>
MYB83
------>
MYB46(1)
-------
HSFC1(2)
-------
HSFB2a(1)
----------->
GT1
------>
HSFB2a(1)
<---------
GLK1(1)
--------->
MYB52(1)
--------
AtSPL8
--------->
ARR11(3)
--------->
ZAT6
<
->
ZAT6
<---------
ANAC58
--------->
YAB1
------>
ZmHOX2a(1)
-
------->
AtSPL8
<---------
ATHB12
--------->
ARR14(2)
------
------>
HSFC1(2)
---------->
ARF1
<---------
ARR14(2)
<------
accttccatagcgtaacagaataaacttgtctgccaatgatatcggtttagtcgaaaaattgtcttccaaatcctataacacaaacagataaactcatca
15880900
------>
ZmHOX2a(2)
<---------
RVE1(1)
--------->
ARR14(3)
<-----------
ARR10
--------->
ARR11(3)
--------->
AGP1
<---------
AGP1
--------->
ARR14(2)
----------->
GT1
<---------
ARR11(3)
--------->
CCA1(2)
<-----------
GT1
<----------
DOF2
<-----------
HVH21
---------->
DOF2
<---------
ARR14(2)
--------->
CCA1(2)
===================================
HOX2a_HOX2a
-
---------
ARR11(3)
<------
ZmHOX2a(1)
<---------
ARR14(3)
<-
-------->
ARR11(3)
==================================
HOX2a_HOX2a
----
--->
YAB1
--------->
ARR11(3)
<---------
YAB1
<------
ZmHOX2a(2)
<---------
ARR14(2)
---
YAB1
--------->
At4g35610
--------->
YAB1
<---------
CCA1(2)
--------->
ARR14(2)
tagatatgtcagcaatagatataggaaaagaaaattataactatatgcagatcttttttataaaaaaaacaagtctaaatttgaagtatatggttttgtc
15881000
<---------
ARR11(3)
------>
ZmHOX2a(1)
<---------------
AGL15
--------->
ANAC55(2)
<---------
ANAC55(2)
<---------
ANAC58
<---------
ANAC55(1)
----------->
GT1
<---------
ANAC58
<---------
MYB46(3)
--------->
TOE2(3)
<---------
MYB52(1)
--------->
MYB52(2)
----------------->
AG
---------->
DOF2
------------>
MYB.PH3(2)
----------------->
AGL1
--------->
ANAC46
-------->
YAB1
<-----------
GT1
--------->
ANAC58
--------->
ANAC58
--------
ATHB12
--------->
AHL20(2)
--------->
ANAC58
--------->
ANAC58
----->
WOX13(1)
<---------
ATHB12
--------->
ANAC46
<-----------
GT1
aatcaaatgagtttgttacaaatgaattacgtttcctaaacaagacattcccttgttttttactgaaatacgaaagaaaactaaacaatgaaacaataga
15881100
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AGI:
At1g42420.1
Description:
transposable element gene. pseudogene, hypothetical protein
Range:
from: 15875739
to: 15880625
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.