Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ANAC55(1)                                                                                    --------->ANAC58                                    <----------ID1                                  --------->ANAC58                          <----------DOF2                                           --------->ANAC46                <---------ZAT14  --------->MYB52(1)                      --------->RAP2.6(2)                --------->ZAT14 ---------->DOF2                          ----------->RAV1(1)    -----       --------->ANAC46   ------>ZmHOX2a(1)                          --------->MYB46(3)         -----       --------->ZAT6    --------->TOE2(3)         <---------ALFIN1----------->RAV1(1)    --------->YAB1   tttagcttcacactagagaacactcatcctttaccaaagggacaaaaccccaaacacctctattcaatgccacagccacaattcacaagtaatgaaaacc  14032500                                                                  ------>MYB46(1)                                                                  ------>MYB83                                                                ------->GAMYB              <---------ARR11(3)                                <---------ALFIN1                    -       <---------ALFIN1                                        --------->MYB46(3)                <xxx      ------>MYB46(1)                                          <---------MYB55(2)             <------      ------>MYB83          <----------DOF2                  <<<<<<<<<GT-1                    -------    --------->AtMYB61 <---------CCA1(2)>>>>>>>>>RAP2.2       <-----------GT1                  ------- ---->TOE1(3) --------->ARR11(3)     <---------ARR11(3)   --------->YAB1      ------>ZmHOX2a(1)------ ---->TOE2(3)<---------CCA1(2)      <---------CCA1(2)   --------->ICU4---------->DOF2         <------   ctaacacctacacatatatctctcaaatctctttctctatatctaaatcaccagtgccaatattaaccaccctaaggctcctctctatctagggttccag  14032600      ------>MYB83      ------>MYB46(1)    --------->AtMYB61    <---------MYB111(1)    <---------MYB111(2)                                                               <-------TEIL    <---------MYB46(2)      <---------------AGL15                                 <---------TOE2(2)    <---------MYB55(2)      --------------->AGL15                                 <---------TOE1(2)    --------->MYB46(3)--------->ANAC58                                    --------->ANAC55(2)   --------->ANAC46   --------->ANAC46                                    <---------ANAC55(1) -------->MYB46(3)    --------->ANAC58                                    <---------ANAC55(2) xxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->DAG2                          <---------ANAC58 ---HSFB2a(2) ----------------->AGL2    <---------ANAC46                  <---------ANAC58 -->HSFB2a(2) ----------------->AGL1    <---------ANAC55(2)  ---------->DOF2   <---------ANAC46 -->HSFC1(1)--------->LBD16 --------->TOE2(3)          >>>>>>>>>MYB98     <---------ANAC46 --->LBD16 --------->DEAR3(1)   ---------->DOF2    --------->TOE2(3) <---------MYB46(3) ---HSFC1(1)------>NtERF2  ----------------->AGL3  --------->TOE1(3) <-----------RAV1(1)           --   aaaccaccaaactccgcccaaaacaagaaaccacaaaaggttatgtgaagaaaccctaacccagaaagagattgttgcgtctcgtagattcaatcgctca  14032700                       --------->ANAC46                      ------->GAMYB                     --------->MYB46(3)                    --------->ANAC58                    --------->ANAC58                    ------>MYB83                    ------>MYB46(1)                    -------->P                    --------->ANAC46                  ------->GAMYB                  --------->AtMYB61                 --------->MYB46(3)                     --------->ANAC58                 <---------MYB52(2)         --------->ANAC58                                 --------                 <---------MYB55(2)         --------->ANAC58                         --------->YAB1               --------->MYB52(1)      <----------ID1   --------->ANAC58            <---------YAB1 ------->YAB1<---------MYB59    ----------->GT1<----------DOF2                    --------->YAB1   atcgaaacaaattggcctaaccaacccacaaggagagaaaaacgacaagctttgtgaaacgcgatagaaggaagaaacgatggattataagaagaaggaa  14032800            --------->ATHB12            --------->ATHB51            -------->HAHB4            <---------ICU4            <--------ATHB1           --------->AHL20(2)                           --------->REM1(2)           --------->ICU4                            <---------ANAC58                        <-------           <---------ATHB51                 <---------TOE1(3)                            <<<<<<<<<MYB2  <---------HSFB2a(2)       <------ZmHOX2a(1)        <---------ANAC46                  <------MYB46(1)  --------->HSFB2a(2)    --------->CCA1(2)  <---------TOE2(3)                          <------MYB83 --->GT1   <---------AHL20(2)  <---------At4g35610   <---------ANAC58    <------------------------ANAC81   acttgtagaagaaataattggaatcagataggaagatgatgaaattagggtttttgcgagtagaggcgagaaattgttttttgttaatttggttttctct  14032900                                                                      <---------ICU4                                                                      --------->YAB1                          --------->TOE1(2)                 ------>ZmHOX2a(1)         <---------AHL20(2)                          --------->TOE2(2)                --------->TOE2(3)          --------->AHL20(2)                    --------->ANAC58                <-----------GT1  --------->ICU4  --------->AHL20(2)                    --------->ANAC58               <-----------GT1 --------->YAB1 <---------AHL20(2)          <---------AHL20(2)               ------->TEIL------>ZmHOX2a(1) --------->YAB1 ----GT1  --------->AHL20(2)             *TSS <----------DOF2    ------------>CBF<---------YAB1   cttctgtgtcaattttttgggaacgaaacgtatgaagaaacaatgagcctttttttcctctccttagaacaataatcaaaatttttatttaatttctgaa  14033000                                                                            <---------PCF2                                                                            --------->PCF2                                        --------->MYB59              ------>ZmHOX2a(1)                                        <---------TOE2(3)          ------>ZmHOX2a(2)                                        <---------------AtSPL8    <---------YAB1                                        --------------->AtSPL3   <---------ARR11(3)                                        --------------->AtSPL8   --------->ARR11(3)                                  <---------TOE1(3)             --------->YAB1                                  <---------TOE2(3)             -------->HAHB4                                 <---------DOF5.7(2)           <---------ATHB12           <----------              <---------AHL20(2) ---------->DOF2           <---------MYB52(2)         <---------DAG2      --------->ATHB12       ----------->GT1<-------TEIL   --------->MYB46(3)         <----------DOF2   tttgtttttgatttgtttaatctaatttgaatagttaaagtttaggtacaatataggcccaactaatgatcctagatgggcccataaacttttttcggta  14033100                                                                        ------->TEIL                                                                      ------->GAMYB                                                                     <---------MYB52(2)                                                                     --------->MYB46(3)                                                                    --------------->AtSPL8                                                                   --------->MYB52(1)         -------                                                                   <-----------GT1       --------->MYB52(1)                                                                 <---------MYB52(2)    <---------MYB52(2)                                                                --------->ANAC58      --------->ANAC58                                                           <---------TOE2(3)          --------->ANAC58                   --------->MYB52(2)                   <---------AHL20(2)    --------->AHL20(2) <---  <---------MYB46(3)             ---------->DOF2 <-----------GT1--------->ANAC58 <---------TOE2(3) -GT1            <---------MYB52(1)    <------ZmHOX2a(1)--------->AHL20(2)    <---------AHL20(2)-----   ttgtttgttcattcgatgtgttagttcttacattgtaaagaggatgagttttgaccattttaatgtaagtaacgaaccattttaatgtaagtaacgaatt  14033200                                                                                                    -                                                                                                    <                                                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                                                              ------>NtERF2         <                                                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                                                             --------->ETT(2)      <-                                                                             <---------ETT(2)  <xxxxx                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                           ------>NtERF2     <xxxxxxx                                                                           <---------ATERF1(1)<xxxxxx                                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                          <---------DEAR3(1) <xxxxxxx                                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                         xxxxxxxxxxxxxxxx>smallRNA(i)                       <---------ARR14(2)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       --------->ARR14(2)                            xxxxxxxxxxxxxxxx>smallRNA(i) <xx                     --------->LBD16                                 <-----------HVH21      xxxxxxxxx                    <---------ANAC46                              xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxx                    <---------ANAC58                              <---------ANAC58         <xxxxxxxxx                    <---------ANAC58                              <---------ANAC58        <xxxxxxxxxx                    <---------ANAC55(1)                           <---------AtLEC2     --------->TOE2(2)                    <---------ANAC55(2)           <---------TOE2(3) <-----------RAV1(1)--------->TOE1(2)             <-----------GT1               <---------TOE2(3) <----------DOF2<------NtERF2 -----------          <---------AHL20(2)          xxxxxxxxxxxxxxxx>smallRNA(i)----------->RAV1(2) --------->MYB46(3) >TEIL   --------->AHL20(2)  ---------->DOF2      <---------TOE1(3) xxxxxxxxxxxxxxxx>smallRNA(i) <xxx ------AHL20(2)   ------>MYB46(1)    --------->ZAT18--------->ARR11(3)  <---------At4g35610---------- ---->AHL20(2)    ------>MYB83      <-----------HVH21   ------>ZmHOX2a(1)--------->ATERF1(1)<xxxxxxxx   ttatacttaaattttataccttccgtatacttaaagaaggtcactgatgtttaaggtcctgttcttttgcctgtcgctggcgactgaaaccagcgacagc  14033300                 <---------AtLEC2                 <---------ANAC58             <---------MYB52(1)            xxxxxxxxxxxxxxxx>smallRNA(i)          <xxxxxxxxxxxxxxxxsmallRNA(i)           --------->MYB52(2)                    xxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxx>smallRNA(i)         xxxxxxxxxxxxxxxx>smallRNA(s)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  ----------->RAV1(1)--------->DEAR3(1)        xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxx>smallRNA(i)      <xxxxxxxxxxxxxxxxsmallRNA(s)           <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxsmallRNA(s)  ---------->DOF2<---------ANAC46            xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxxsmallRNA(s)               <xxxxxxxxxxxxxxxxsmallRNA(i) -------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ETT(2) xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxsmallRNA(i)               xxxxxxxxxxxxxxxx>smallRNA(i) -----ZmHOX2a(2) <---------ANAC58          <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxsmallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(s)      --------->AHL20(2) xxxxxxxxxsmallRNA(i)                  ---------->DOF2 <------NtERF2        <---------AHL20(2) xxxxxxxxxxsmallRNA(i)               <xxxxxxxxxxxxxxxxsmallRNA(s) ----------->HVH21 xxxxxxxxxsmallRNA(s)              <xxxxxxxxxxxxxxxxsmallRNA(s)   --------->MYB46(3) xxxxxxxxxxxxxxsmallRNA(i)        <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxx>smallRNA(s)            <---------At4g35610 <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxsmallRNA(s)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxsmallRNA(s)       <---------MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(s)<---------MYB52(1) xxxxxxsmallRNA(i)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->TOE1(2)   ----------->GT1 >HVH21 xxxxxxxxxxxxxxxx>smallRNA(i)<------ZmHOX2a(2)<---------ETT(2)  --------->At5g28300 xxxxxxxxxxxxxsmallRNA(s)<---------TOE1(2)<xxxxxxxxxxxxxxxxsmallRNA(s)----------->GT1  --------->AHL20(2) ->RAV1(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)xxxxxxxxxxxxxxxx>smallRNA(s) --------->ICU4 xxxxxxxxsmallRNA(i)<-----------HVH21--------->YAB1 <xxxxxxxxxxxxxxxxsmallRNA(i)  ---------->ID1    x   gatcaaaagttgttcgtttgcttgtcgctggttcagcgatcaaaagtagcgacagtcgccagggaccagcgaccgtaattttttgtcgttaaaattttta  14033400  Previous    Next  AGI:  At1g36990.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61797.1) Range:  from: 14029733    to: 14032941    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g36992.1    Description:  other RNA Range:  from: 14032364    to: 14033209    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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