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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC55(1)
--------->
ANAC58
<----------
ID1
--------->
ANAC58
<----------
DOF2
--------->
ANAC46
<---------
ZAT14
--------->
MYB52(1)
--------->
RAP2.6(2)
--------->
ZAT14
---------->
DOF2
----------->
RAV1(1)
-----
--------->
ANAC46
------>
ZmHOX2a(1)
--------->
MYB46(3)
-----
--------->
ZAT6
--------->
TOE2(3)
<---------
ALFIN1
----------->
RAV1(1)
--------->
YAB1
tttagcttcacactagagaacactcatcctttaccaaagggacaaaaccccaaacacctctattcaatgccacagccacaattcacaa
gtaatgaaaacc
14032500
------>
MYB46(1)
------>
MYB83
------->
GAMYB
<---------
ARR11(3)
<---------
ALFIN1
-
<---------
ALFIN1
--------->
MYB46(3)
<xxx
------>
MYB46(1)
<---------
MYB55(2)
<------
------>
MYB83
<----------
DOF2
<<<<<<<<<
GT-1
-------
--------->
AtMYB61
<---------
CCA1(2)
>>>>>>>>>
RAP2.2
<-----------
GT1
-------
---->
TOE1(3)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
YAB1
------>
ZmHOX2a(1)
------
---->
TOE2(3)
<---------
CCA1(2)
<---------
CCA1(2)
--------->
ICU4
---------->
DOF2
<------
ctaacacctacacatatatctctcaaatctctttctctatatctaaatcaccagtgccaatattaaccaccctaaggctcctctctatctag
ggttccag
14032600
------>
MYB83
------>
MYB46(1)
--------->
AtMYB61
<---------
MYB111(1)
<---------
MYB111(2)
<-------
TEIL
<---------
MYB46(2)
<---------------
AGL15
<---------
TOE2(2)
<---------
MYB55(2)
--------------->
AGL15
<---------
TOE1(2)
--------->
MYB46(3)
--------->
ANAC58
--------->
ANAC55(2)
--------->
ANAC46
--------->
ANAC46
<---------
ANAC55(1)
-------->
MYB46(3)
--------->
ANAC58
<---------
ANAC55(2)
xxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
DAG2
<---------
ANAC58
---
HSFB2a(2)
----------------->
AGL2
<---------
ANAC46
<---------
ANAC58
-->
HSFB2a(2)
----------------->
AGL1
<---------
ANAC55(2)
---------->
DOF2
<---------
ANAC46
-->
HSFC1(1)
--------->
LBD16
--------->
TOE2(3)
>>>>>>>>>
MYB98
<---------
ANAC46
--->
LBD16
--------->
DEAR3(1)
---------->
DOF2
--------->
TOE2(3)
<---------
MYB46(3)
---
HSFC1(1)
------>
NtERF2
----------------->
AGL3
--------->
TOE1(3)
<-----------
RAV1(1)
--
aaaccaccaaactccgcccaaaacaagaaaccacaaaaggttatgtgaagaaaccctaacccagaaagagattgttgcgtctcgtagattcaatcgctca
14032700
--------->
ANAC46
------->
GAMYB
--------->
MYB46(3)
--------->
ANAC58
--------->
ANAC58
------>
MYB83
------>
MYB46(1)
-------->
P
--------->
ANAC46
------->
GAMYB
--------->
AtMYB61
--------->
MYB46(3)
--------->
ANAC58
<---------
MYB52(2)
--------->
ANAC58
--------
<---------
MYB55(2)
--------->
ANAC58
--------->
YAB1
--------->
MYB52(1)
<----------
ID1
--------->
ANAC58
<---------
YAB1
------->
YAB1
<---------
MYB59
----------->
GT1
<----------
DOF2
--------->
YAB1
atcgaaacaaattggcctaaccaacccacaaggagagaaaaacgacaagctttgtgaaacgcgatagaaggaagaaacgatggattataagaagaaggaa
14032800
--------->
ATHB12
--------->
ATHB51
-------->
HAHB4
<---------
ICU4
<--------
ATHB1
--------->
AHL20(2)
--------->
REM1(2)
--------->
ICU4
<---------
ANAC58
<-------
<---------
ATHB51
<---------
TOE1(3)
<<<<<<<<<
MYB2
<---------
HSFB2a(2)
<------
ZmHOX2a(1)
<---------
ANAC46
<------
MYB46(1)
--------->
HSFB2a(2)
--------->
CCA1(2)
<---------
TOE2(3)
<------
MYB83
--->
GT1
<---------
AHL20(2)
<---------
At4g35610
<---------
ANAC58
<------------------------
ANAC81
acttgtagaagaaataattggaatcagataggaagatgatgaaattagggtttttgcgagtagaggcgagaaattgttttttgttaatttggttttctct
14032900
<---------
ICU4
--------->
YAB1
--------->
TOE1(2)
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------->
TOE2(2)
--------->
TOE2(3)
--------->
AHL20(2)
--------->
ANAC58
<-----------
GT1
--------->
ICU4
--------->
AHL20(2)
--------->
ANAC58
<-----------
GT1
--------->
YAB1
<---------
AHL20(2)
<---------
AHL20(2)
------->
TEIL
------>
ZmHOX2a(1)
--------->
YAB1
----
GT1
--------->
AHL20(2)
*
TSS
<----------
DOF2
------------>
CBF
<---------
YAB1
cttctgtgtcaattttttgggaacgaaacgtatgaagaaacaatgagcctttttttcctctccttagaacaataatcaaaatttttatttaatttctgaa
14033000
<---------
PCF2
--------->
PCF2
--------->
MYB59
------>
ZmHOX2a(1)
<---------
TOE2(3)
------>
ZmHOX2a(2)
<---------------
AtSPL8
<---------
YAB1
--------------->
AtSPL3
<---------
ARR11(3)
--------------->
AtSPL8
--------->
ARR11(3)
<---------
TOE1(3)
--------->
YAB1
<---------
TOE2(3)
-------->
HAHB4
<---------
DOF5.7(2)
<---------
ATHB12
<----------
<---------
AHL20(2)
---------->
DOF2
<---------
MYB52(2)
<---------
DAG2
--------->
ATHB12
----------->
GT1
<-------
TEIL
--------->
MYB46(3)
<----------
DOF2
tttgtttttgatttgtttaatctaatttgaatagttaaagtttaggtacaatataggcccaactaatgatcctagatgggcccataaacttttttcggta
14033100
------->
TEIL
------->
GAMYB
<---------
MYB52(2)
--------->
MYB46(3)
--------------->
AtSPL8
--------->
MYB52(1)
-------
<-----------
GT1
--------->
MYB52(1)
<---------
MYB52(2)
<---------
MYB52(2)
--------->
ANAC58
--------->
ANAC58
<---------
TOE2(3)
--------->
ANAC58
--------->
MYB52(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---
<---------
MYB46(3)
---------->
DOF2
<-----------
GT1
--------->
ANAC58
<---------
TOE2(3)
-
GT1
<---------
MYB52(1)
<------
ZmHOX2a(1)
--------->
AHL20(2)
<---------
AHL20(2)
-----
ttgtttgttcattcgatgtgttagttcttacattgtaaagaggatgagttttgaccattttaatgtaagtaacgaaccattttaatgtaagtaacgaatt
14033200
-
<
xxxxxxxxxxxxxxxx>
smallRNA(s)
------>
NtERF2
<
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
ETT(2)
<-
<---------
ETT(2)
<xxxxx
xxxxxxxxxxxxxxxx>
smallRNA(i)
------>
NtERF2
<xxxxxxx
<---------
ATERF1(1)
<xxxxxx
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
DEAR3(1)
<xxxxxxx
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
ARR14(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ARR14(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xx
--------->
LBD16
<-----------
HVH21
xxxxxxxxx
<---------
ANAC46
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxx
<---------
ANAC58
<---------
ANAC58
<xxxxxxxxx
<---------
ANAC58
<---------
ANAC58
<xxxxxxxxxx
<---------
ANAC55(1)
<---------
AtLEC2
--------->
TOE2(2)
<---------
ANAC55(2)
<---------
TOE2(3)
<-----------
RAV1(1)
--------->
TOE1(2)
<-----------
GT1
<---------
TOE2(3)
<----------
DOF2
<------
NtERF2
-----------
<---------
AHL20(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
----------->
RAV1(2)
--------->
MYB46(3)
>
TEIL
--------->
AHL20(2)
---------->
DOF2
<---------
TOE1(3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxx
------
AHL20(2)
------>
MYB46(1)
--------->
ZAT18
--------->
ARR11(3)
<---------
At4g35610
----------
---->
AHL20(2)
------>
MYB83
<-----------
HVH21
------>
ZmHOX2a(1)
--------->
ATERF1(1)
<xxxxxxxx
ttatactta
aattttataccttccgtatacttaaagaaggtcactgatgtttaaggtcctgttcttttgcctgtcgctggcgactgaaaccagcgacagc
14033300
<---------
AtLEC2
<---------
ANAC58
<---------
MYB52(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
MYB52(2)
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
----------->
RAV1(1)
--------->
DEAR3(1)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
---------->
DOF2
<---------
ANAC46
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
-------->
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
ETT(2)
xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(i)
-----
ZmHOX2a(2)
<---------
ANAC58
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
AHL20(2)
xxxxxxxxx
smallRNA(i)
---------->
DOF2
<------
NtERF2
<---------
AHL20(2)
xxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
----------->
HVH21
xxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
MYB46(3)
xxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxx>
smallRNA(s)
<---------
At4g35610
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxx
smallRNA(s)
<---------
MYB46(3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
MYB52(1)
xxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
TOE1(2)
----------->
GT1
>
HVH21
xxxxxxxxxxxxxxxx>
smallRNA(i)
<------
ZmHOX2a(2)
<---------
ETT(2)
--------->
At5g28300
xxxxxxxxxxxxx
smallRNA(s)
<---------
TOE1(2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
----------->
GT1
--------->
AHL20(2)
->
RAV1(1)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
ICU4
xxxxxxxx
smallRNA(i)
<-----------
HVH21
--------->
YAB1
<xxxxxxxxxxxxxxxx
smallRNA(i)
---------->
ID1
x
gatcaaaagttgttcgtttgcttgtcgctggttcagcgatcaaaagtagcgacagtcgccagggaccagcgaccgtaattttttgtcgttaaaattttta
14033400
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AGI:
At1g36990.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61797.1)
Range:
from: 14029733
to: 14032941
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g36992.1
Description:
other RNA
Range:
from: 14032364
to: 14033209
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.