Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------HSFC1(2)                                  --------->HSFC1(2)                                  <---------HSFB2a(1)                      --------->KAN4(2)                     --------->HSFB2a(1)                                         <---------TOE2(3)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               --------->LBD16                     <---------HSFB2a(1)                               <---------LBD16                    ---------->TaMYB80                          <---------HSFB2a(2)      ------>ZmHOX2a(1)                    <---------KAN4(2)           <---------ETT(2)--------->HSFB2a(2)<------ZmHOX2a(1) ---->ANAC46  --------->DAG2      --------->HSFB2a(1)  <---------ARR11(3)        --------->ANAC46 -----GT1   ---------->DOF2--------------------->WRI1  <---------AHL20(1)--------->LBD16--------->TOE2(3)   atcacaactaaatggaaaggggaacatgcccttggaaatttctccaaatatcgacaatatatacttatagaaccccggtttataaggaatccttataaac  12555600                                                         <---------ARR11(3)                                    ------->TEIL     ---------->DOF2                          --------->YAB1     ------>ZmHOX2a(2)                            <---------AHL20(1)                    <---------ARR11(3)      <------ZmHOX2a(2)                             --------->AHL20(1)                    --------->GLK1(2)      --------->ARR11(3)--------->At4g35610          --------->AHL20(2)                    --------->ARR11(3)     <---------ARR11(3)<---------At4g35610          <---------AHL20(2)              ----------->GT1    <---------REM1(1) <---------YAB1              <---------AHL20(2)            ---------->DOF2     --------------->AtSPL8xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <------     <------ZmHOX2a(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            --------->ICU4 --------->YAB1   ttatagaggaagcgaaaagaaaaatctaacatgagatgtaccatagatcccatatgaaaggtctgatcacggtgtaagtattaaaactgtattatattac  12555700                                                                      <---------ICU4                                                                      --------->YAB1                                           <---------ICU4           <---------YAB1                                           --------->ATHB12         <---------AHL20(2)                                          --------->ICU4           --------->TOE2(3)                                          <---------YAB1         --------->AHL20(2)               <--                                          <---------ATHB12       --------->AHL20(1)              ----                                         <---------TOE2(3)       <---------ARR11(3)              <---                                  <--------P                     <---------AHL20(1)        <--------- -----GT1     ---------->DOF2  --------->MYB59            ----------->GT1               <-----------GT1   tcaacttatatatgaataaagcatatgttgattttggtaagttaatgattttcttatatgtagtcaaaatattaatgacatttctctaaattacttttat  12555800                 --------->AHL20(2)                 <---------AHL20(2)           <---------DAG2                                                        <---------ZAT14           --------->TOE1(3)                                                     --------->ZAT14 -------AHL20(2) <---------AHL20(1)                             ----------->TBP  <---------ZAT18 ----->AHL20(2) <---------AHL20(2)             --------->AHL20(2)          --------->GLK1(2) <------NtERF2 ------AHL20(2) --------->AHL20(2)             <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -DOF2     --------->TOE2(3)           ---------->DOF2       <---------------AGL15         xxxxxxxxxx   taatttttggtaaccttattaaatttagtattcaaatctaagaaagtattttaatacttcttacctataaatgtgatattctgtgctctcatggtcgcga  12555900                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                       <-------TEIL          <xxxxxxx                                                                      --------->CCA1(2)     <xxxxxxxx                                                                      --------->ARR14(1)    <xxxxxxxx                               <------------CBF                      <---------ARR14(2)     <xxxxxxxx                              <--------ATHB1                         --------->ARR11(1)     <xxxxxxxx                              --------->ATHB51                       --------->ARR14(2)    ----------                              -------->HAHB4                    <----------DOF2            ==========                              --------->YAB1                  <------ZmHOX2a(2)       <xxxxxxxxxxxxxx                              <---------ICU4                 --------->ARR11(3)      xxxxxxxxxxxxxxxx                      ----------->GT1                        <---------ARR14(2)     <xxxxxxxxxxxxxxxx                 ---------->DOF2                             --------->ARR14(2) <---------HSFB2a(2)         ---------->DOF2     --------->ICU4                  <---------ARR11(3) <xxxxxxxxxxxxxxxxxxxx        <------ZmHOX2a(1)    <---------YAB1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)---------->DOF2<--      <---------TOE2(3)      <---------ATHB51<---------AHL20(1)------>ZmHOX2a(2)--------->HSFB2a(2) xxxxxxxxxxxxx>smallRNA(i2)--------->YAB1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxx   gagaagttgaggaaagagagaaagttgtataataattgttgggataacatattttggtataccgatctttagatacgagcttatggaaagtggcaacatt  12556000          --------->TOE2(3)         ----------->RAV1(2)        <xxxxxxxxxxxxxxxxsmallRNA(s)       <---------ALFIN1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ZAT18 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(se3)                         <---------YAB1 ->RAV1(1)--------->TOE1(3)                        --------->AHL20(2) ====================RAV                           <---------AHL20(1) xxxxxxxxsmallRNA(si3)                     <----------DOF2                                         xx xxxxxxx>smallRNA(si3)                     <---------DAG2                                       xxxxx xxxxxxsmallRNA(le3)                    <-----------GT1 <---------AHL20(2)                     xxxxxx xxsmallRNA(si3)               --------->ANAC58    <---------AHL20(2)            <---------TOE2(3)xxx -------YAB1    --------->YAB1 --------->ANAC58<---------AHL20(2)               --------->YAB1 xxxxxx xxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ZAT6----------->GT1     xxxxxxx   gtgaatgcacaacctgaattatcaggcataagtaagaaattttgactttttattttattttagtgaaaacttgttttggttataatgttttagtttttgt  12556100                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        ------>NtERF2                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <---------PCF2                                                     <---------ATERF1(1)                                                     --------->LBD16                                                    <---------ANAC58                                                    <---------ANAC58                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                   <---------LBD16                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  --------->ALFIN1  <----------TaMYB80             ------>ZmHOX2a(2)                 <xxxxxxxxxxxxxxxxsmallRNA(i)            <------ZmHOX2a(2)             xxxxxxxxxxxxxxxx>smallRNA(s)           ------->TEIL                   xxxxxxxxxxxxxxxx>smallRNA(i)           <---------ARR14(2)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           --------->ARR14(2)            xxxxxxxxxxxxxxxx>smallRNA(s)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)        <---------WOX13(1)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <-   --------->At4g35610                 --------->HSFB2a(2) <----------DOF2                         <x   <---------At4g35610                 <---------HSFB2a(2)<----------DOF2                         <--   <-------GAMYB  ----------->GT1    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          <--  <---------MYB46(3)                <---------MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxx xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <---- xxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         <xxxxx xxxxxxxxxxxxxxxx>smallRNA(i2)      <---------ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(i)          --------- xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->ARR14(2)--------->ATERF1(1)                 --------->ARR11(3) xxxxxxxxxxxxxxxxx>smallRNA(i2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  <---------ARR11(3) xxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              xxxxxxxxxxxxxxxxx   tcggcagttgatggatccaagagttatatgtacgagcagttatggaaactctgtgcggggcctttgtgtgatattccaaaacttggagaaaagatttatt  12556200         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ANAC58       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       --------->ANAC58      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ------>ZmHOX2a(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   --------->TOE2(3)<---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <------------------------ANAC81 ---------DOF2      <---------ANAC58     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)     <------------------------ANAC81 -------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <------------------------ANAC81 -------GT1       --------->ARR11(3) <----------DOF2 xxxxxxxxxxxxxxxxxxsmallRNA(si3)    <------------------------ANAC81 >AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <-----------GT1 xxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)       <-----------GT1       <----------DOF2   actttcctcaaggcaatatagagcttgtgagttctctctctttttttttttttttttttttctctctctctctctctcttctttctctctccctctcttc  12556300                                                                                   <---------CCA1(2)                            <----------DOF2                                      <---------CCA1(2)                     <----------DOF2                                     <----------DOF2   tctctctctctctctctctctctctttcttctttctctctccctctcttctctccctcttctctctctctctcttctttctccctatctctctctccctc  12556400                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 <---------TOE1(3)                                 <---------TOE2(3)                                        -----------                                <-----------RAV1(2)                                   ------>ZmHOX2a(2)                          <---------DAG2                                            --------->ARR11(3)               <---------DAG2 <-----------GT1                                  <xxxxxxxxxxxxxxxxsmallRNA(i)         --------->YAB1   <----------DOF2   --------->At4g35610               xxxxxxxxxxxxxxxxxxxxxxx      <---------CCA1(2)   xxxxxxxxxxxxxxxx>smallRNA(i)            ----------->GT1   <---------ARR11(3)  <---------ANAC46  <-----------GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   tctctcgtgtatcaaaaccttttgacgacttttttcaggttgaggcatctacaagagaagagttgaatgagttaaaaccaatttgtgatcttccttctaa  12556500  Previous    Next  AGI:  At1g34390.1    Description:  ARF22 (AUXIN RESPONSE FACTOR 22); transcription factor. Identical to Auxin response factor 22 (ARF22) [Arabidopsis Thaliana] (GB:Q9C8N7;GB:Q5IRX1); similar to ARF21 (AUXIN RESPONSE FACTOR 21), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34410.1); similar to ARF15 (AUXIN RESPONSE FACTOR 15), transcription factor [Arabidopsis thaliana] (TAIR:AT1G35520.1); similar to ARF12 (AUXIN RESPONSE FACTOR 12), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69513.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain AUX/IAA Range:  from: 12555983    to: 12559060    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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