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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
HSFC1(2)
--------->
HSFC1(2)
<---------
HSFB2a(1)
--------->
KAN4(2)
--------->
HSFB2a(1)
<---------
TOE2(3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
LBD16
<---------
HSFB2a(1)
<---------
LBD16
---------->
TaMYB80
<---------
HSFB2a(2)
------>
ZmHOX2a(1)
<---------
KAN4(2)
<---------
ETT(2)
--------->
HSFB2a(2)
<------
ZmHOX2a(1)
---->
ANAC46
--------->
DAG2
--------->
HSFB2a(1)
<---------
ARR11(3)
--------->
ANAC46
-----
GT1
---------->
DOF2
--------------------->
WRI1
<---------
AHL20(1)
--------->
LBD16
--------->
TOE2(3)
atcacaactaaatggaaaggggaacatgcccttggaaatttctccaaatatcgacaatatatacttatagaaccccggtttataaggaatccttataaac
12555600
<---------
ARR11(3)
------->
TEIL
---------->
DOF2
--------->
YAB1
------>
ZmHOX2a(2)
<---------
AHL20(1)
<---------
ARR11(3)
<------
ZmHOX2a(2)
--------->
AHL20(1)
--------->
GLK1(2)
--------->
ARR11(3)
--------->
At4g35610
--------->
AHL20(2)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
At4g35610
<---------
AHL20(2)
----------->
GT1
<---------
REM1(1)
<---------
YAB1
<---------
AHL20(2)
---------->
DOF2
--------------->
AtSPL8
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<------
<------
ZmHOX2a(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
ICU4
--------->
YAB1
ttatagaggaagcgaaaagaaaaatctaacatgagatgtaccatagatcccatatgaaaggtctgatcacggtgtaagtattaaaactgtattatattac
12555700
<---------
ICU4
--------->
YAB1
<---------
ICU4
<---------
YAB1
--------->
ATHB12
<---------
AHL20(2)
--------->
ICU4
--------->
TOE2(3)
<---------
YAB1
--------->
AHL20(2)
<--
<---------
ATHB12
--------->
AHL20(1)
----
<---------
TOE2(3)
<---------
ARR11(3)
<---
<--------
P
<---------
AHL20(1)
<---------
-----
GT1
---------->
DOF2
--------->
MYB59
----------->
GT1
<-----------
GT1
tcaacttatatatgaataaagcatatgttgattttggtaagttaatgattttcttatatgtagtcaaaatattaatgacatttctctaaattacttttat
12555800
--------->
AHL20(2)
<---------
AHL20(2)
<---------
DAG2
<---------
ZAT14
--------->
TOE1(3)
--------->
ZAT14
-------
AHL20(2)
<---------
AHL20(1)
----------->
TBP
<---------
ZAT18
----->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
GLK1(2)
<------
NtERF2
------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
-
DOF2
--------->
TOE2(3)
---------->
DOF2
<---------------
AGL15
xxxxxxxxxx
taatttttggtaaccttattaaatttagtattcaaatctaagaaagtattttaatacttcttacctataaatgtgatattctgtgctctcatggtcgcga
12555900
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<-------
TEIL
<xxxxxxx
--------->
CCA1(2)
<xxxxxxxx
--------->
ARR14(1)
<xxxxxxxx
<------------
CBF
<---------
ARR14(2)
<xxxxxxxx
<--------
ATHB1
--------->
ARR11(1)
<xxxxxxxx
--------->
ATHB51
--------->
ARR14(2)
----------
-------->
HAHB4
<----------
DOF2
==========
--------->
YAB1
<------
ZmHOX2a(2)
<xxxxxxxxxxxxxx
<---------
ICU4
--------->
ARR11(3)
xxxxxxxxxxxxxxxx
----------->
GT1
<---------
ARR14(2)
<xxxxxxxxxxxxxxxx
---------->
DOF2
--------->
ARR14(2)
<---------
HSFB2a(2)
---------->
DOF2
--------->
ICU4
<---------
ARR11(3)
<xxxxxxxxxxxxxxxxxxxx
<------
ZmHOX2a(1)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
---------->
DOF2
<--
<---------
TOE2(3)
<---------
ATHB51
<---------
AHL20(1)
------>
ZmHOX2a(2)
--------->
HSFB2a(2)
xxxxxxxxxxxxx>
smallRNA(i2)
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxx
gagaagttgaggaaagagagaaagttgtataataattgttgggataacatattttggtataccgatctttagatacgagctt
atggaaagtggcaacatt
12556000
--------->
TOE2(3)
----------->
RAV1(2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
ALFIN1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
ZAT18
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxx
smallRNA(se3)
<---------
YAB1
->
RAV1(1)
--------->
TOE1(3)
--------->
AHL20(2)
====================
RAV
<---------
AHL20(1)
xxxxxxxx
smallRNA(si3)
<----------
DOF2
xx
xxxxxxx>
smallRNA(si3)
<---------
DAG2
xxxxx
xxxxxx
smallRNA(le3)
<-----------
GT1
<---------
AHL20(2)
xxxxxx
xx
smallRNA(si3)
--------->
ANAC58
<---------
AHL20(2)
<---------
TOE2(3)
xxx
-------
YAB1
--------->
YAB1
--------->
ANAC58
<---------
AHL20(2)
--------->
YAB1
xxxxxx
xxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
ZAT6
----------->
GT1
xxxxxxx
gtgaatgcacaacctgaattatcaggcataa
gtaagaaattttgactttttattttattttagtgaaaacttgttttggttataatgttttagtttttgt
12556100
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
------>
NtERF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
PCF2
<---------
ATERF1(1)
--------->
LBD16
<---------
ANAC58
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
LBD16
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
ALFIN1
<----------
TaMYB80
------>
ZmHOX2a(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<------
ZmHOX2a(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
------->
TEIL
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
ARR14(2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ARR14(2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
WOX13(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<-
--------->
At4g35610
--------->
HSFB2a(2)
<----------
DOF2
<x
<---------
At4g35610
<---------
HSFB2a(2)
<----------
DOF2
<--
<-------
GAMYB
----------->
GT1
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<--
<---------
MYB46(3)
<---------
MYB52(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxx
xxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<----
xxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxx
xxxxxxxxxxxxxxxx>
smallRNA(i2)
<---------
ARR14(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
---------
xxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
--------->
ARR14(2)
--------->
ATERF1(1)
--------->
ARR11(3)
xxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ARR11(3)
xxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxx
tcggcag
ttgatggatccaagagttatatgtacgagcagttatggaaactctgtgcggggcctttgtgtgatattccaaaacttggagaaaagatttatt
12556200
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ANAC58
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
------>
ZmHOX2a(1)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
TOE2(3)
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<------------------------
ANAC81
---------
DOF2
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<------------------------
ANAC81
-------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
-------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<------------------------
ANAC81
-------
GT1
--------->
ARR11(3)
<----------
DOF2
xxxxxxxxxxxxxxxxxx
smallRNA(si3)
<------------------------
ANAC81
>
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<-----------
GT1
xxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<-----------
GT1
<----------
DOF2
actttcctcaaggcaatatagagctt
gtgagttctctctctttttttttttttttttttttctctctctctctctctcttctttctctctccctctcttc
12556300
<---------
CCA1(2)
<----------
DOF2
<---------
CCA1(2)
<----------
DOF2
<----------
DOF2
tctctctctctctctctctctctctttcttctttctctctccctctcttctctccctcttctctctctctctcttctttctccctatctctctctccctc
12556400
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
TOE1(3)
<---------
TOE2(3)
-----------
<-----------
RAV1(2)
------>
ZmHOX2a(2)
<---------
DAG2
--------->
ARR11(3)
<---------
DAG2
<-----------
GT1
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
YAB1
<----------
DOF2
--------->
At4g35610
xxxxxxxxxxxxxxxxxxxxxxx
<---------
CCA1(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
----------->
GT1
<---------
ARR11(3)
<---------
ANAC46
<-----------
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
tctctcgtgtatcaaaaccttttgacgacttttttcag
gttgaggcatctacaagagaagagttgaatgagttaaaaccaatttgtgatcttccttctaa
12556500
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AGI:
At1g34390.1
Description:
ARF22 (AUXIN RESPONSE FACTOR 22); transcription factor. Identical to Auxin response factor 22 (ARF22) [Arabidopsis Thaliana] (GB:Q9C8N7;GB:Q5IRX1); similar to ARF21 (AUXIN RESPONSE FACTOR 21), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34410.1); similar to ARF15 (AUXIN RESPONSE FACTOR 15), transcription factor [Arabidopsis thaliana] (TAIR:AT1G35520.1); similar to ARF12 (AUXIN RESPONSE FACTOR 12), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69513.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain AUX/IAA
Range:
from: 12555983
to: 12559060
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.