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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
YAB1
--------------->
AGL15
<---------------
AGL15
--------->
ANAC58
--------->
HSFB2a(2)
<-----------
GT1
<---------------
AGL15
--------->
YAB1
<---------
HSFB2a(2)
----------->
GT1
<-----------------
AGL2
------>
MYB52(1)
=============================
MADS_MADS
-------->
RAV1(1)
<-----------------
AGL1
----->
AtMYB61
--------->
ZAT6
----------------->
AGL1
---->
MYB46(3)
<-----------
GT1
--------->
YAB1
--------->
ANAC58
---
ARR14(2)
--------->
MYB52(1)
--------->
YAB1
<-----------------
AG
------
-->
ARR14(2)
---------->
DOF2
--------->
AHL20(2)
--------->
WOX13(1)
--------------->
AtSPL8
<-----
caccagtaataactcatcaaagtcaataacagataaattaacactcatgaacaatcacagacatttccagacttggtactcaaataagaacacttcgaat
10224400
---------->
DOF2
--------->
CCA1(2)
--------->
ARR14(1)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(1)
--------->
TOE2(3)
--------->
ARR11(1)
<---------
ANAC58
>>>>>>>>>
RAP2.2
<---------
GLK1(2)
<---------
ANAC58
--------->
YAB1
<---------
TOE2(3)
<---------
MYB52(1)
<---------
ANAC46
--------->
WOX13(1)
<---------
YAB1
--------->
DOF5.7(2)
--->
ARR14(2)
<---------
AHL20(2)
<---------
ANAC58
<---------
TOE2(3)
<-------
----
ARR14(2)
------->
TEIL
<-------
TEIL
<---------
ANAC58
<---------
WOX13(1)
<-------
ccatagatttcaatctaaatacgaatttattaagattcgattaaaagggtttcgttac
cttggcgagattgacgtagaagaacaatggtttcttagtgtt
10224500
------>
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
MYB52(1)
--------->
LBD16
<---------
ANAC58
<---------
ANAC46
--------->
HSFB2a(2)
<---------
ANAC55(2)
<<<<<<<<<
TBF1
<---------
ANAC58
--------->
ARR14(2)
<-------
TEIL
--------->
ANAC55(2)
--------->
ARR14(2)
------->
GAMYB
<---------
ANAC55(1)
--
ZAT6
<---------
ARR14(2)
--------->
MYB46(3)
------>
ZmHOX2a(1)
------->
TEIL
----
RAV1(1)
<---------
GLK1(2)
--------->
At4g35610
================
HOX2a_HOX2a
------
ggaaacttgaatccgattcttcttctgggtatcaacagccaagttcatgttgttaactccttccgtgatctcttccat
tgaatctaactcagaaaaatta
10224600
<---------
GLK1(1)
------>
MYB46(1)
--------->
HSFB2a(2)
------>
MYB83
<---------
HSFB2a(2)
<----------
DOF2
--------->
AtMYB61
------>
ZmHOX2a(1)
<---------
DAG2
------->
TEIL
---
--->
AHL20(2)
<---------
TOE2(3)
<---------
CCA1(2)
--------->
CCA1(2)
<---------
MYB59
aaacttctcctctcgaatttagatttctctctcacttttatctcagaaaacgaatgaaattgaagagacagagagacgacgatgaagcttgaaccaaacc
10224700
<---
----
-----------
<---------
ANAC46
--------->
ANAC46
<---------
LBD16
--------->
ZAT6
--------->
ALFIN1
<-----------
GT1
----------------->
AGL1
--------->
TOE2(3)
--------->
ANAC58
------------>
CBF
-----
--------->
TOE1(3)
--------->
ANAC46
------>
MYB83
----------------->
AGL1
---------->
DOF2
--------->
ANAC58
------>
MYB46(1)
------------>
CBF
<---------
ANAC46
------>
LBD16
*
TSS
--------->
MYB52(1)
--------->
AtMYB61
<---------
ALFIN1
<------------
CBF
cccaaaaaaccct
aacttgaaatgccaaacgacatcgttttaacacaacctacacaaatgggctaggctccagcccaataggcccaattggggggaaaat
10224800
<-------
GAMYB
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
YAB1
--------->
LBD16
*
TSS
<------
ZmHOX2a(2)
<---------
HSFB2a(2)
<---------
LBD16
------
AHL20(2)
<-----------
HVH21
<---------
HSFC1(1)
--------->
MYB52(1)
----->
AHL20(2)
<---------
ARR14(2)
<---------
ARR11(3)
--------->
HSFB2a(2)
<---------
ATHB12
>>>>
>
GT1
<----------
CDC5
--------->
DOF5.7(2)
------->
TEIL
<----------
DOF2
--------->
MYB46(3)
---->
AHL20(2)
--------->
ARR14(2)
--------->
ARR11(3)
--------->
HSFC1(1)
--------->
WOX13(1)
>>>>>>>
taattctgcgatgagcaaaatcggcgttatccgatcagatcgttgaattgaatcttcgagaagactcttcttttgattcaatcactcaccggagaagaag
10224900
<------
NtERF2
------>
NtERF2
<---------
ATERF1(1)
<-----------
HVH21
<---------
DEAR3(1)
--------->
DEAR3(1)
--------->
ANAC58
--------->
ANAC58
<----
---------->
DOF2
<---------
O2
---------
<---------
MYB52(1)
--------->
ANAC46
--------->
At4g35610
<---------
DEAR3(1)
--------->
O2
--------->
ZAT2
<---------
DREB2C(2)
----------->
HVH21
<---------
ZAT2
>>>>>
TBF1
--------->
LBD16
<-----------
HVH21
<---------
At4g35610
>>
TBF1
<---------
LBD16
--------->
ANAC46
--------->
REM1(1)
aagaagct
atgccggtgttcaaagctccgttcaatggctactctgtgaaattcagtccattctacgagtcacgcctcgccgtcgctacagctcagaactt
10225000
------>
NtERF2
<---------
ATERF1(1)
------->
GAMYB
<---------
ARR14(2)
--------->
DEAR3(1)
<---------
ARR11(1)
<---------
At4g35610
--------->
DEAR3(2)
--------->
GLK1(2)
--------->
At4g35610
---------->
DOF2
<------
NtERF2
<---------
GLK1(1)
<---------
TOE1(2)
--------->
RAP2.6(2)
--------->
HSFB2a(2)
--------->
SPL7
--------->
ARR14(2)
<---------
HSFB2a(2)
<---------
MYB52(1)
<---------
ARR14(2)
------>
ZmHOX2a(1)
<-----------
HVH21
----------->
HVH21
<---------
HSFB2a(2)
--------->
ZAT18
--------->
ARR14(2)
--------->
ANAC58
--------->
HSFB2a(2)
<---------
ZAT18
<---------
ANAC58
<---------
TOE2(2)
-----
<---------
LBD16
<---------
ZAT2
<---------
ANAC58
<---------
SPL7
<------
NtERF2
<-
<---------
GLK1(1)
<---------
ARR14(2)
<---------
LBD16
--------->
MYB52(1)
--------->
ANAC58
--------
--------->
GLK1(1)
--------->
ARR14(2)
----------->
RAV1(2)
--------->
ARR14(2)
<---------
At4g35610
-----
LBD16
--------->
MYB46(3)
--------->
ZAT2
<-----------
RAV1(2)
<---------------
AtSPL3
<-------
>
ARR14(2)
--------->
MYB52(1)
------>
ZmHOX2a(1)
--------->
GLK1(1)
<---------
ARR14(2)
--------->
At4g35610
cggaattctcggaaacggccgaatccatgtcctcgagctcgctcctggagctccaggcgtaactgaatccgtctcgtacgatacagccgacgctgtatac
10225100
<<<<<<<<<
AtERF-3
<<<<<<<<<
AtERF-4
------>
NtERF2
<---------
RAP2.6(2)
<---------
RAP2.3(2)
<---------
DEAR3(1)
--------->
ATERF1(1)
--------->
RAP2.6(3)
------>
NtERF2
<------
NtERF2
--------->
LBD16
--------->
RAP2.6(2)
--------->
DEAR3(1)
<------
MYB83
--------->
RAP2.3(2)
--------->
ANAC58
<---------
MYB46(3)
--------->
RRTF1(3)
--------->
ANAC46
<------
MYB46(1)
--------->
RRTF1(2)
--------->
ANAC58
------>
ZmHOX2a(1)
<-----------
RAV1(1)
--------->
ANAC46
<-----------
GT1
============
<---------
TOE2(2)
<---------
LBD16
--------->
ARR11(3)
------>
ZmHOX2a(1)
------->
TEIL
--------->
ZAT14
----------->
TGA1
<---------
ARR14(2)
===============
---->
ANAC46
--------->
GLK1(2)
--------->
RAP2.3(1)
--------->
ARR14(2)
<---------
ALFIN1
--------
ANAC46
--------------------->
WRI1
<---------
RAP2.3(3)
<---------
At4g35610
->
ARR14(2)
<-----------
ARR10
--------->
DEAR3(1)
<---------
ARR11(3)
------>
ZmHOX2a(1)
--
ARR14(2)
<---------
GLK1(2)
---------->
CDC5
----------->
HVH21
--------->
CCA1(2)
==================
gacgtatgttggtcagaatctcatgactctgtgctcatcgccgcaattggtgacggctcagtgaagatttacgacacagctcttcctcctccttctaatc
10225200
<-------
PIF5
------->
PIF5
<-------
TEIL
------->
PIF4
<------
NtERF2
<-------
PIF4
------>
NtERF2
<-------
MYC3
<---------
ANAC46
------->
MYC3
<------
NtERF2
------->
MYC2
------>
NtERF2
<-------
MYC2
<---------
DEAR4(2)
--------->
ANAC58
<---------
ATERF1(1)
--------->
ANAC58
<---------
DEAR3(1)
------------>
OsbHLH66
--------->
ANAC46
--------->
KAN4(2)
<-------
MYC3
--------->
KAN4(1)
------->
MYC3
<----
<---------
KAN4(1)
<---------
O2
<-----
<------
ZmHOX2a(2)
<-------
TEIL
--------->
TGA1a
-------
--------->
ARR11(3)
----------->
GT1
--------->
O2
--------->
CCA1(2)
<---------
ARR11(3)
--------->
TGA1a
<---------
TGA1a
--------->
ARR14(1)
===========
HOX2a_HOX2a
<---------
ANAC58
<---------
ALFIN1
--------->
ARR11(1)
===========
HOX2a_HOX2a
<---------
TGA1a
--------->
ANAC46
----------->
ARR10
===========
HOX2a_HOX2a
<---------
ANAC58
<---------
ALFIN1
<---------
ANAC46
<-
cgattagatcattccaagagcacgcgcgtgaggttcaatctgtggattacaatcccacgcggcgcgattcgtttctcacttcttcgtgggatgatacggt
10225300
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AGI:
At1g29250.1
Description:
nucleic acid binding. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G34160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65645.1); contains InterPro domain Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775)
Range:
from: 10223252
to: 10224713
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g29260.1
Description:
PEX7 (peroxin 7). similar to MSI1 (MULTICOPY SUPRESSOR OF IRA1) [Arabidopsis thaliana] (TAIR:AT5G58230.1); similar to pectinesterase-like protein [Brassica rapa] (GB:ABD91573.1); similar to peroxisomal import receptor PTS2 [Brassica napus] (GB:ABB92566.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680)
Range:
from: 10224801
to: 10226191
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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