Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->YAB1                                                                            --------------->AGL15                                                                            <---------------AGL15                                                                           --------->ANAC58                                                                --------->HSFB2a(2)       <-----------GT1                                          <---------------AGL15    --------->YAB1                                              <---------HSFB2a(2) ----------->GT1                                               <-----------------AGL2 ------>MYB52(1)                                               =============================MADS_MADS -------->RAV1(1)                                              <-----------------AGL1 ----->AtMYB61                        --------->ZAT6           ----------------->AGL1 ---->MYB46(3)                      <-----------GT1 --------->YAB1         --------->ANAC58 ---ARR14(2)            --------->MYB52(1)--------->YAB1       <-----------------AG            ------ -->ARR14(2)   ---------->DOF2 --------->AHL20(2)--------->WOX13(1)   --------------->AtSPL8   <-----   caccagtaataactcatcaaagtcaataacagataaattaacactcatgaacaatcacagacatttccagacttggtactcaaataagaacacttcgaat  10224400                                        ---------->DOF2                                --------->CCA1(2)                                --------->ARR14(1)                               --------->ARR14(2)                               <---------ARR14(2)                       --------->AHL20(2)                       <---------AHL20(1)                       --------->AHL20(1)           --------->TOE2(3)   --------->ARR11(1)           <---------ANAC58           >>>>>>>>>RAP2.2     <---------GLK1(2)            <---------ANAC58           --------->YAB1    <---------TOE2(3)     <---------MYB52(1)<---------ANAC46        --------->WOX13(1)   <---------YAB1        --------->DOF5.7(2) --->ARR14(2)          <---------AHL20(2)        <---------ANAC58   <---------TOE2(3)        <------- ----ARR14(2)        ------->TEIL<-------TEIL    <---------ANAC58<---------WOX13(1)          <-------   ccatagatttcaatctaaatacgaatttattaagattcgattaaaagggtttcgttaccttggcgagattgacgtagaagaacaatggtttcttagtgtt  10224500                                                                  ------>ZmHOX2a(2)                                                                --------->ARR11(3)                                                                <---------ARR11(3)                                                              <---------MYB52(1)                                                             --------->LBD16                                                            <---------ANAC58                                                            <---------ANAC46                      --------->HSFB2a(2)                   <---------ANAC55(2)                 <<<<<<<<<TBF1                              <---------ANAC58             --------->ARR14(2)          <-------TEIL       --------->ANAC55(2)       --------->ARR14(2)        ------->GAMYB              <---------ANAC55(1) --ZAT6<---------ARR14(2)       --------->MYB46(3)       ------>ZmHOX2a(1)    ------->TEIL ----RAV1(1)<---------GLK1(2)  --------->At4g35610       ================HOX2a_HOX2a           ------   ggaaacttgaatccgattcttcttctgggtatcaacagccaagttcatgttgttaactccttccgtgatctcttccattgaatctaactcagaaaaatta  10224600                    <---------GLK1(1)                                                        ------>MYB46(1)         --------->HSFB2a(2)                                                                 ------>MYB83         <---------HSFB2a(2)    <----------DOF2                                            --------->AtMYB61       ------>ZmHOX2a(1)        <---------DAG2                                    ------->TEIL    --- --->AHL20(2)    <---------TOE2(3) <---------CCA1(2)                   --------->CCA1(2)   <---------MYB59   aaacttctcctctcgaatttagatttctctctcacttttatctcagaaaacgaatgaaattgaagagacagagagacgacgatgaagcttgaaccaaacc  10224700                                                                                                 <---                                                                                                 ----                                                                                          -----------                                                                                        <---------ANAC46                                        --------->ANAC46                              <---------LBD16                                        --------->ZAT6                               --------->ALFIN1                                      <-----------GT1                           ----------------->AGL1       --------->TOE2(3)  --------->ANAC58                                      ------------>CBF-----       --------->TOE1(3)  --------->ANAC46      ------>MYB83                   ----------------->AGL1  ---------->DOF2         --------->ANAC58      ------>MYB46(1)        ------------>CBF<---------ANAC46 ------>LBD16*TSS       --------->MYB52(1)    --------->AtMYB61    <---------ALFIN1<------------CBF   cccaaaaaaccctaacttgaaatgccaaacgacatcgttttaacacaacctacacaaatgggctaggctccagcccaataggcccaattggggggaaaat  10224800                                      <-------GAMYB                                     ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)                                   --------->ARR14(2)                                   <---------ARR14(2)                 <---------YAB1   --------->LBD16 *TSS                          <------ZmHOX2a(2)      <---------HSFB2a(2)            <---------LBD16 ------AHL20(2)               <-----------HVH21       <---------HSFC1(1)            --------->MYB52(1) ----->AHL20(2) <---------ARR14(2) <---------ARR11(3) --------->HSFB2a(2)     <---------ATHB12   >>>> >GT1  <----------CDC5 --------->DOF5.7(2)      ------->TEIL       <----------DOF2--------->MYB46(3) ---->AHL20(2)  --------->ARR14(2) --------->ARR11(3) --------->HSFC1(1)    --------->WOX13(1)>>>>>>>   taattctgcgatgagcaaaatcggcgttatccgatcagatcgttgaattgaatcttcgagaagactcttcttttgattcaatcactcaccggagaagaag  10224900                                                                              <------NtERF2                                                                             ------>NtERF2                                                                             <---------ATERF1(1)                                                                             <-----------HVH21                                                                            <---------DEAR3(1)                                                                            --------->DEAR3(1)                                                                    --------->ANAC58                                                                    --------->ANAC58            <----                 ---------->DOF2                                    <---------O2            ---------           <---------MYB52(1)                                       --------->ANAC46  --------->At4g35610         <---------DEAR3(1)                                         --------->O2      --------->ZAT2         <---------DREB2C(2)                                     ----------->HVH21    <---------ZAT2 >>>>>TBF1--------->LBD16                                       <-----------HVH21     <---------At4g35610 >>TBF1 <---------LBD16                                        --------->ANAC46     --------->REM1(1)   aagaagctatgccggtgttcaaagctccgttcaatggctactctgtgaaattcagtccattctacgagtcacgcctcgccgtcgctacagctcagaactt  10225000                                                                                     ------>NtERF2                                                                                     <---------ATERF1(1)                                                                                    ------->GAMYB                                                         <---------ARR14(2)         --------->DEAR3(1)                   <---------ARR11(1)         <---------At4g35610                  --------->DEAR3(2)                   --------->GLK1(2)          --------->At4g35610              ---------->DOF2                 <------NtERF2                <---------GLK1(1)           <---------TOE1(2)                --------->RAP2.6(2)       --------->HSFB2a(2)             --------->SPL7         --------->ARR14(2)               <---------HSFB2a(2)       <---------MYB52(1)         <---------ARR14(2)               ------>ZmHOX2a(1)        <-----------HVH21----------->HVH21     <---------HSFB2a(2)           --------->ZAT18       --------->ARR14(2)--------->ANAC58     --------->HSFB2a(2)           <---------ZAT18    <---------ANAC58    <---------TOE2(2)     -----     <---------LBD16             <---------ZAT2       <---------ANAC58  <---------SPL7<------NtERF2<- <---------GLK1(1) <---------ARR14(2)    <---------LBD16 --------->MYB52(1)--------->ANAC58  -------- --------->GLK1(1) --------->ARR14(2)   ----------->RAV1(2)    --------->ARR14(2) <---------At4g35610 -----LBD16 --------->MYB46(3)   --------->ZAT2   <-----------RAV1(2) <---------------AtSPL3 <------- >ARR14(2)--------->MYB52(1) ------>ZmHOX2a(1)--------->GLK1(1)<---------ARR14(2) --------->At4g35610   cggaattctcggaaacggccgaatccatgtcctcgagctcgctcctggagctccaggcgtaactgaatccgtctcgtacgatacagccgacgctgtatac  10225100                                                   <<<<<<<<<AtERF-3                                                   <<<<<<<<<AtERF-4                                                   ------>NtERF2                                                  <---------RAP2.6(2)                                                  <---------RAP2.3(2)                                                  <---------DEAR3(1)                                                 --------->ATERF1(1)                                                 --------->RAP2.6(3)                                       ------>NtERF2                                       <------NtERF2                                       --------->LBD16                                      --------->RAP2.6(2)                                      --------->DEAR3(1)       <------MYB83                   --------->RAP2.3(2)           --------->ANAC58       <---------MYB46(3)             --------->RRTF1(3)            --------->ANAC46       <------MYB46(1)                --------->RRTF1(2)            --------->ANAC58     ------>ZmHOX2a(1)   <-----------RAV1(1)                --------->ANAC46            <-----------GT1        ============  <---------TOE2(2)                  <---------LBD16           --------->ARR11(3)     ------>ZmHOX2a(1)  ------->TEIL             --------->ZAT14     ----------->TGA1<---------ARR14(2)     =============== ---->ANAC46  --------->GLK1(2)      --------->RAP2.3(1)       --------->ARR14(2)    <---------ALFIN1 --------ANAC46         --------------------->WRI1<---------RAP2.3(3)      <---------At4g35610 ->ARR14(2)   <-----------ARR10    --------->DEAR3(1)          <---------ARR11(3)  ------>ZmHOX2a(1) --ARR14(2)  <---------GLK1(2)  ---------->CDC5----------->HVH21--------->CCA1(2)  ==================   gacgtatgttggtcagaatctcatgactctgtgctcatcgccgcaattggtgacggctcagtgaagatttacgacacagctcttcctcctccttctaatc  10225200                    <-------PIF5                    ------->PIF5                                 <-------TEIL                    ------->PIF4                             <------NtERF2                    <-------PIF4                            ------>NtERF2                    <-------MYC3                           <---------ANAC46                    ------->MYC3                          <------NtERF2                    ------->MYC2                          ------>NtERF2                    <-------MYC2                         <---------DEAR4(2)                   --------->ANAC58                      <---------ATERF1(1)                   --------->ANAC58                     <---------DEAR3(1)                  ------------>OsbHLH66                 --------->ANAC46       --------->KAN4(2)                               <-------MYC3      --------->KAN4(1)                                ------->MYC3                             <----      <---------KAN4(1)                               <---------O2                             <-----     <------ZmHOX2a(2)         <-------TEIL           --------->TGA1a                         -------    --------->ARR11(3)      ----------->GT1           --------->O2                         --------->CCA1(2)    <---------ARR11(3) --------->TGA1a                <---------TGA1a                      --------->ARR14(1) ===========HOX2a_HOX2a<---------ANAC58               <---------ALFIN1                    --------->ARR11(1) ===========HOX2a_HOX2a<---------TGA1a                --------->ANAC46                  ----------->ARR10 ===========HOX2a_HOX2a<---------ANAC58             <---------ALFIN1             <---------ANAC46  <-   cgattagatcattccaagagcacgcgcgtgaggttcaatctgtggattacaatcccacgcggcgcgattcgtttctcacttcttcgtgggatgatacggt  10225300  Previous    Next  AGI:  At1g29250.1    Description:  nucleic acid binding. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G34160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65645.1); contains InterPro domain Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related (InterPro:IPR014560); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775) Range:  from: 10223252    to: 10224713    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g29260.1    Description:  PEX7 (peroxin 7). similar to MSI1 (MULTICOPY SUPRESSOR OF IRA1) [Arabidopsis thaliana] (TAIR:AT5G58230.1); similar to pectinesterase-like protein [Brassica rapa] (GB:ABD91573.1); similar to peroxisomal import receptor PTS2 [Brassica napus] (GB:ABB92566.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 10224801    to: 10226191    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.