Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->ANAC46                           -----                              <---------ANAC55(2)    --------->ANAC58                          <-----                      --------->AtLEC2               --------->ANAC58    ----------->GT1       ------                  --------->ZAT14 --------->DAG2 --------->ANAC58        <----------ID1   ----------- --->MYB46(3)     <---------ZAT14---------->DOF2 --------->ANAC58      ---------->DOF2<---------RAP2.6(2) ->MYB52(1)   --------->ZAT6 <-------TEIL        --------->ANAC46   --------->YAB1<----------DOF2   <   actctgaaacttcatatcagtacaatgcaaatacataaagtgatcaaactcacacaagacacattttctatcaaaaagaaaaaactttgcgactgacccg  8957500                                                          --------->CCA1(2)                                                         <---------ARR14(2)                                                         <---------ARR11(3)                                                         --------->ARR14(2)   <---------TOE1(3)                                   --------->LBD16                <---------TOE2(3)   <---------TOE2(3)                               --------->ARR14(2)                --------->DAG2  ---------->DOF2          <---------ATHB12        <---------ARR14(2)               ---------->DOF2 ---->LBD16               ------>MYB46(1)    <------ZmHOX2a(1)            <------ZmHOX2a(2) ----ANAC55(2)         --------->MYB46(3)    <----------ID1              <---------ARR11(3) --->ANAC55(2)       <-----------GT1         ====================================HOX2a_HOX2a    <---- >HVH21   ---------->DOF2 ------>MYB83     --------->ANAC58              --------->ARR11(3)     <---- ---------YAB1  ---------->DOF2            --------->ANAC58      <-------TEIL  <-----------------AGL1   tgattaaagttacaaagccaaagtaaccaatcgctcttaacatgtaaggaacaaatccagatatgagttcatcaagatcacactcgtaaaggaaatgact  8957600                                                                                      <------ZmHOX2a(2)                                                                                     --------->AGP1                                                                                     <---------ARR14(2)          --------->ANAC58                                                     --------->ZAT18         --------->DAG2          --------->YAB1              <---------YAB1 <---------ANAC58        ---------->DOF2         <---------YAB1             --------->YAB1   <---------ANAC58     --------->HSFB2a(2)    <---------ARR14(2)            --------->ICU4   <-------TEIL     <---------HSFB2a(2)    --------->ARR14(2)<---------ANAC58            --------->GLK1(2) -----DAG2--------->ANAC58  <---------GLK1(2) <---------ANAC58           <---------GLK1(2)        --- ------DOF2           ---------->DOF2         <---------ANAC46     ---------->DOF2   --------->ARR14(2)   ttatgttctaaaaagcaaaacccagaaagggattctcataacaacttcgcttgtacagaaattataagagaaagagattcgtgcccagatcgaaattgag  8957700                        <------ZmHOX2a(1)                     <------NtERF2                    --------->LBD16                  <---------LBD16                  <------NtERF2                                              --------->ATHB12                  --------->ATERF1(1)                                       --------->ICU4                 <---------ATERF1(1)      --------->At4g35610    --------->ZAT14                <---------DEAR3(1)<---------ANAC46               <---------ZAT18              <-----------HVH21   <---------ANAC58               <---------ZAT14          ----------->RAV1(2)     --------->ANAC55(2)       <---------MYB52(1)         --------->GLK1(2)        <---------ANAC58   --------->CCA1(2)    --------->YAB1        <----        <---------ARR14(2)  --------->ALFIN1 <------ZmHOX2a(1)--------->MYB52(2)  ----------->GT1 <--   --------->ALFIN1--------->DEAR3(1)   --------->YAB1     <-----------HVH21<---------YAB1      ----- ------>MYB52(1)--------->ETT(2) <------NtERF2   <------ZmHOX2a(1)       <---------ATHB12     -------   taagggtggagaacctggtcgccggaggagatggaggcgtaatcagaggaaggagagacgctgttagtggagtcactcatgatggagtaagaagagaaga  8957800                              --------->HSFC1(2)                              <---------HSFC1(2)                              <---------HSFB2a(1)                             --------->ANAC58      ----------->HVH21      --------->ANAC58 -----ARR14(2)     <<<<<<<<<SARD1            <---------ICU4                                      ---- -----TEIL         <<<<<<<<<CBP60g       --------->AHL20(2)                            --------->WOX13(1) ---->ARR14(2)    ------>MYB83--------->HSFB2a(1)                       --------->ALFIN1       <----- ---->ARR10       ------>MYB46(1)  <----------DOF2                  <---------ZAT14   <---------WRKY38(1)   ttcactcactgaccaaaaccaaatttcatggaagcatctttgaataaatatcacaagagttgagagagagagaagtgagggagaatagtcaatgagagga  8957900                                                                                         <<<<<<<<<TBF1                                                                                        <------------                                                                                   <<<<<<<<<TBF1         <---------ANAC55(2)                                                   --------->ARR14(2)         ----------->GT1                                                       <---------ARR14(2)  ---------->DOF2                                         ---------->DOF2      <-----------ARR10 ------>DOF2                 <---------YAB1         --------->ALFIN1 <-----------HVH21<<<<<<<<<TBF1 -ZmHOX2a(1)     ---------->DOF2    *TSS   XXXXXXXXXXXXXXXXXXX>MIR156A-F     <---------MYB46(3)------   aaagaaaagaaacgtgaatcaaagaagaaatatgaaaaacgatgagagaagagagtgaggcaaagaagttttgtcagagcggttcttcttcttcttcgtc  8958000        --------->ATHB12       <---------AHL20(2)                                                                         <--       <---------YAB1               <------ZmHOX2a(2)                         --------->AHL20(2)  <--      <-----------TBP  <---------MYB46(3)           --------->ANAC55(2)   <----------DOF2         ---    <----------DOF2   <---------AtMYB61             --------->ANAC46    ---------->ID1    --------->YAB1    --------------->AGL15         --------->At4g35610           --------->ANAC55(2)<-----------GT1--- ------------ANAC81   --------->ALFIN1    <----------DOF2     <-----------GT1 <---------AHL20(2) <--- ---->ID1<------------CBF         <---------At4g35610--------->LBD16   <-----------GT1 ------>ZmHOX2a(1)   ttcttcctttttattggataagcagtggtcgttttcagatcacactttctccctccgtaactattcacgtttttttctttttaattttcctatcacaaaa  8958100                         <---------DAG2                         <----------DOF2         <----------DOF2<---------ANAC58    <----------DOF2     <---------ANAC58 <-----------GT1     ---------->ID1 -------AHL20(2)     <---------MYB52(1) -------ICU4        <-------GAMYB  <---------MYB52(1) ------>ATHB51     <---------MYB46(3) ------>AHL20(2)   --------->MYB52(2)<---------MYB46(3) <----------DOF2                            <- ------AHL20(2)   <-------TEIL<-----------GT1        ------->TEIL   --------->MYB52(1)             <-   ttatttcttttcttttttggttcgttgctttatttctgtttgttatttggaaatggacctttaatgcatataacagaaaaattgcatatagttttctcaa  8958200                                                                         --------->ICU4                                                                       --------->YAB1                                                                      --------->AHL20(2)                                                                      <---------AHL20(2)                                                                      <---------YAB1                                                                   <---------AHL20(2)             <--                                          --------->At5g28300     --------->AHL20(2)     <----------DOF2                            ------>MYB46(1)                  ----------->GT1        <<<<<<<<<TBF1 <-- --------DAG2               ------>MYB83 ----------->GT1<---------AHL20(2)  --------->ANAC55(2)   <-- ---------DOF2<---------YAB1-------->P--------->ALFIN1  --------->AHL20(2)  <---------ANAC55(2)   <--   actttatgtcaaagtttttataaattcacctacaagggaagtgtggtaaatgtttgatataaattgtattatataattatgtattcttcttctttttttt  8958300                                                               --------->WRKY18(1)                                                             ----------->GT1                                               <---------CCA1(1)             <---------TOE2(3)                 <---------RVE1(1)             <---------------AtSPL3           --------->ARR11(3)           <---------AHL20(2)                 <---------ARR11(3)      <---------MYB52(1)               <---------ICU4     --------->MYB52(1)         --------->ANAC46 -------AtLEC2     --------->TOE1(2)  <---------YAB1     --------->ARR14(2)       --------->TOE1(2) -------ANAC58    --------->ANAC55(2) --------->ICU4     <---------ARR14(2)       --------->TOE2(2) -------ANAC58   <-------TEIL     --------->TOE2(3)  ---------->DOF2<---------ARR11(3)     <--------- -------ANAC46   ------->TEIL    --------->ANAC46  <---------AHL20(2)           ------->TEIL   gcttggacgttgtttaatgtacgtatgaattgtatacctcattattcagatatttaaaagaaccggtcaaaatcatctattgaatctacgactctttgtt  8958400  Previous    Next  AGI:  At1g25500.1    Description:  choline transporter-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42110.1); contains InterPro domain Protein of unknown function DUF580 (InterPro:IPR007603) Range:  from: 8955236    to: 8957936    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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