Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------ARR11(3)                                                    --------->RVE1(2)                                                    <-----------ARR10                                                    <---------ARR11(2)                                             <-----------HVH21                                           --------->ATERF1(1)                                           <------NtERF2                                          <---------DEAR3(2)                                         <---------DEAR3(1)                                  <-------                                        <---------ABI4(1)                                 <---------LBD16                                        <------NtERF2                                  --------->KAN4(2)                                        --------->ATERF1(1)                           <---------HSFC1(2)                                       <---------DEAR4(2)                             <---------KAN1                                       <---------ORA47(2)                             <---------HSFB2a(1)                                       ------>NtERF2<---------ARR14(2)                --------->HSFC1(2)                                       <---------ATERF1(1)                            --------->KAN4(1)                                      --------->ATERF1(2)                             --------->HSFB2a(1)                                      <---------RAP2.6(2)                             <---------KAN4(1)                                      <---------DEAR3(1)                              --------->KAN1                                      <---------ATERF1(2)                       --------->O2---------                                     --------->ATERF1(1)                        --------->ANAC58           <---------MYB52(1)   <---------ANAC58    --------->ARR14(2)          --------->ANAC58   --          <-------GAMYB         <---------ANAC58   <---------CCA1(2)<---------ZAT6   <---------KAN4(2) -------->YAB1         --------->YAB1<---------ORA47(1)      <----------DOF2  <---------ALFIN1<------ ---------ICU4        <---------YAB1 <---------LBD16--------->ARR11(2)       --------->DEAR3(1) ----- --------YAB5 <---------YAB1 <----------DOF2--------->ALFIN1<---------DOF5.7(1) --------->ANAC46-----   catcatcaagtccgttatagtagtatcatacctttcttggccggcggtgtcccatatctgagcctttatagtcttatcgcccacgcgaacattccggtaa  6266500                                                                                            ------>ZmHOX2a(1)                                                                                      <---------ATERF1(1)                                                                                    <------NtERF2                                                                                    --------->ATERF1(1)                                                                                  <---------ANAC46                                                                                  <---------DEAR3(1)                                                                                 <------NtERF2                                                                                 --------->ATERF1(1)                                                                                 <---------LBD16                                                                                <---------RAP2.3(1)                  <---------DEAR3(2)                                            ------>NtERF2                  <---------MYB46(3)                                           <---------DEAR3(1)----                  <------MYB46(1)                            --------->DOF5.7(1)<---------ATERF1(1) --MYB52(1)       <------MYB83   --------->ANAC46         ---------->DOF2      --------->ATERF1(2)  - >LBD16          <---------DEAR3(1)                 --------->GLK1(2)          <---------RAP2.3(3)  - -------->DOF2  <---------ORA47(1)        <---------CCA1(2) --------->DOF5.7(1)<---------ATERF1(2)<-- --P          <---------MYB46(3) ------->GAMYB     --------->ARR14(2)         --------->SPL7(1)  <--- ---->ANAC58 <---------AtMYB61<---------ARR11(2)--------->HSFB2a(2)         ----------->HVH21  ------ ---->ANAC58<---------MYB52(1)--------->MYB52(1)<---------HSFB2a(2)   <---------RVE1(2)--------->ATERF1(1)   gcaaagtctactccgatggtcggtttagagtctaaccgaaactcatctctcgagaacctcgaaaggaggtttgattttccgacggcggagtctcctatca  6266600                                                                                 <---------YAB1                                                                                --------->AHL20(1)                                            --------->LBD16                     <---------AHL20(1)                                            ------>NtERF2                       --------->AHL20(2)                                           --------->ANAC46                     <---------AHL25(1)                                           --------->ANAC58                     <---------AHL20(2)                                           --------->DEAR3(1)                   <---------AHL25(2)                                           --------->ANAC58                     <---------AHL25(3)                                          <---------LBD16                       --------->AHL25(2)                                         ------>ZmHOX2a(1)                      --------->AHL25(1)                                     --------->ARR11(2)                         --------->AHL20(3)                                   --------->YAB5                               <---------AHL20(3)  ------>NtERF2                  --------->SPL7(1)                            --------->AHL12(2) --------->DREB2C(2)             <---------TOE1(2)                          <---------RVE1(1) <---------ALFIN1                <---------TOE2(2)                          <---------CCA1(1) --------->DEAR3(1)            <---------SPL7(1)                           <---------ARR11(3) ----->At4g35610              --------->TOE1(1)                            --------->AHL20(1) -------->DEAR4(2)            --------->TOE2(1)                            --------->ARR11(3) -------->ORA47(2)           --------------->AtSPL3                        <---------AHL20(1)      -- -------ALFIN1               <---------------AtSPL3                        <---------RVE1(2)   ------ ------At4g35610             --------------->AtSPL8                      ----------->ARR10     ------ --->YAB1           <---------ALFIN1 --------->ARR14(2)               <---------RVE1(2)   <---------GATA12   gcaccgccttgaataggtagtcgcactcttcgtcgtacgattcctccgccatgctctatggtgttcaagtttgataagatattatattagtaaatcgaag  6266700                                            ---------->DOF2                                           <------ZmHOX2a(1)                                 --------->GATA12                                 --------->ARR14(2)                                 <---------ARR14(2)                                --------->KAN1                             ------>ZmHOX2a(2)--------->DOF5.7(1)                 =================================HOX2a_HOX2a                 <------ZmHOX2a(2)   --------->LBD16                                  --------->ZAT6 --------->DOF5.7(1)         =====================HOX2a_HOX2a               ---------->DOF2 -------->DOF2  --------->RVE1(2)<---------GATA12                          <------ZmHOX2a(1) --->ANAC58    <------ZmHOX2a(1)<---------GLK1(1)                       <---------LBD16         <---- --->ANAC58    =====================HOX2a_HOX2a                   ------->TEIL   <---------DOF5.7(1)   caaaaggaagttgagaaggatcaatggatgatcgaaatccgaagaggaaagggtttgttttatgtaagaacctctcaggaaagtctttccactaagtata  6266800                              <---------YAB1                            -------->HAHB4                            <---------ICU4                           <---------YAB5                          <---------AHL20(3)                   <---------ARR11(3)                          <---------WOX13(2)                   --------->ARR11(3)                          --------->AHL12(2)                 --------->ANAC58                       <---------RVE1(2)                <----------ID1                      --------->YAB1                    <---------ETT(1)         --------->ATHB12--------->YAB5              <---------WOX13(1)                            <-         <---------AHL20(2)--------->ICU4          --------->ATHB12                                <-        --------->AHL20(2)--------->WOX13(2)       --------->YAB5                                  <-     --------------->AGL15--------->AHL20(3)      <---------YAB1--------->CCA1(2)              <-----    =================================================================================================    ----------------->AGL3<---------AHL12(2)    <---------At4g35610       --------->AHL20(2)<-------- -----ARR14(2)       ----------->GT1        <-----------HVH21--------->ANAC58   <---------YAB1 <-----   tatggctccatttattgaaaacatggataattatgcatataactaatgtcatatgattgcgacaagatatatgaaatgaattagtattgttttttttctt  6266900                                        --------->DAG2                                        --------->DOF5.7(1)                             <---------YAB1                            --------->AHL12(3)                            <---------AHL25(2)                            --------->AHL12(2)                            --------->AHL25(2)                                                 ------                            --------->AHL20(3)                                                <------                            <---------AHL20(3)                                               <-------                          <---------AHL20(2)                                                 <-------        ----------->GT1   --------->AHL12(3)                                                 <-------       ----------->GT1    --------->AHL25(1)                                                 -------- --------ANAC58           <---------AHL25(1)                                             --------->DOF5.7(1) --------ANAC46           --------->AHL25(3)                                            --------->DOF5.7(1) --------ANAC58           <---------AHL12(3)                                        <---------KAN1 -----DOF2         <------ZmHOX2a(1)   --------->DOF5.7(1)                        --------->YAB1 ==========MADS_MADS     --------->AHL20(2)         <---------AHL20(2)           ----------->GT1 ---GT1<---------ZAT6    --------->AHL25(3)   ----------->GT1               <------ZmHOX2a(1)<------- ----------AGL15--------->YAB5*TSS    ---------->DOF2                   --------->ZAT2---------->DOF2   ttcttggaagagttaaaatgaggacgatataatttttgagaaaaggtatagtatataatatagaaaatgaaacgagcaggacaaggataaaagaggcgtg  6267000                                                                                     ----------->HVH21                                                                             <---------YAB1                                                                            <---------AHL12(3)                                                                            --------->AHL25(2)                                                                            <---------AHL25(1)                                                                            --------->AHL20(3)                                        ----------->GT1                     <---------AHL20(2)    --------------->AtSPL8          <---------RVE1(2)                       <---------AHL25(3)    <---------------AtSPL8          --------->AHL20(1)                      <---------AHL20(3)   <------------CBF       <---------RVE1(1)                                 --------->AHL25(1) ----->HVH21              <---------CCA1(1)                                 --------->AHL20(2) -----HVH21              <---------AHL20(1)                                --------->AHL25(1) --ANAC58                <---------ARR11(3)                                --------->AHL20(2)       - --ANAC58                --------->ARR11(3)                                --------->YAB1     ------- --ANAC46          ------>MYB46(1)  <---------AHL20(1)                    <---------KAN1     <------- ->O2              ------>MYB83     --------->ARR11(3)             <---------WRKY38(1)     <---------DOF5.7(1) --O2         <-----------GT1      --------->AHL12(2)              <---------WRKY12<---------ZAT6   -   acagagattgtacataataccatccaagatatttgttatatattgtatatagtctgtatttctattttgtcaacgaattaaaatagtgtgacctcttatc  6267100                                                                                     ------>ZmHOX2a(2)                                                                                    --------->GLK1(1)                                                                                    <------ZmHOX2a(2)                                                                                   <---------AGP1                                                                                   --------->GATA12                                                                                   <---------GATA12                                                                                   --------->RVE1(2)                                                                          ===============HOX2a_HOX2a                                                                          ------>ZmHOX2a(2)                                                                         <------ZmHOX2a(2)                                                                         ================HOX2a_HOX2a                                                                        --------->ARR11(3)                                                                        <---------ARR11(3)                                                                        --------->ARR14(2)                                                                        <---------ARR14(2)                                                                        --------->AGP1                                                                        <---------AGP1                                                                        <---------GATA12                                                                        <---------RVE1(2)                                                                        --------->GATA12        -----                                                                       <---------CCA1(2)        -----                                                                     --------->HSFB2a(2)    <--------      <----------DOF2                                           <---------WOX13(1) --------->ARR14(2) -------->TOE2(3)                        <---------AHL12(2)    <---------RVE1(2)   <---------ARR14(2) -->RVE1(2)                <-----------------AG                >>>>>>>>>ARR2       <---------ARR11(3) --CCA1(2)<-----------GT1  <-----------------AGL1             --------->ATHB12     --------->ARR11(3) -------->YAB1        <---------YAB1<------ZmHOX2a(1)        <---------YAB1       <------ZmHOX2a(1)   tatcttaacttttgacttcttgttatgtttctagcttaggaaaaaataagaagttgtgatgttttgattgtctagatcttattaggatctcaagcgtcaa  6267200                                                                                               <-----                                                                                               <-----                                                                                               <-----                <---------AtLEC2                                                       <------MYB46(1)              <---------YAB1                                                           <------MYB83              --------->AtLEC2                                                        <---------AtMYB61           <---------YAB5                                                             --------->MYB59           <---------ATHB12                                                         --------->ARR11(2)   --------->DAG2                                              ------>MYB83         <---------ARR11(2)  ---------->DOF2------->TEIL                                  ------>MYB46(1)      <---------MYB52(1) ---->ANAC58--------->YAB5            ------->TEIL           <---------MYB59   --------->MYB52(1) ---->ANAC58--------->YAB1 --------->ZAT14                <-----------GT1      ------------>AtMYB77 - ---HVH21--------->WOX13(1)<---------ZAT14         <-----------GT1 <-----------GT1 <-------GAMYB ----   gtcataaagctcaatcatgcatgtttctctgtagtctctgtacgtttgagttttgacattttaccaaattcactcactgactcacggttaggttttgact  6267300                                                                       <---------AHL25(2)                                                                       <---------AHL25(3)                                                                       --------->AHL12(3)                                                                       --------->AHL25(1)                                                                       <---------AHL25(1)                                                                       --------->AHL25(2)                                                                       <---------AHL12(1)                                                                       <---------AHL12(2)                                                                       --------->AHL12(1)                                                                      --------->AHL20(2)                                                                      --------->AHL25(3)                                                                      --------->AHL12(3)                                                          --------->DOF5.7(1)                                                          --------->DAG2<---------AHL12(1)                                                         ---------->DOF2--------->AHL12(1)                                            <---------GLK1(2)         <---------AHL12(3)  --------->DOF5.7(1)                       <---------ARR14(2)        <---------AHL25(1) ----ANAC58                                 --------->ARR14(2)        --------->AHL25(1) ----ANAC58                                 --------->GATA12          <---------AHL25(2) ----ANAC46                                 <---------RVE1(2)         --------->AHL25(2) --------->DOF2                <---------DAG2<---------KAN1----------->GT1                 <---------At4g35610 ------->GT1                   <----------DOF2           --------->DOF5.7(1)--------->TOE2(3)      --   tgtaaagagttggctacttgggcctaagatgggctttatcaggtcggatttttcacaaaaaaagtcaaaaaaaaaaattcttaaaaatgggtgagcaaat  6267400  Previous    Next  AGI:  At1g18200.1    Description:  AtRABA6b (Arabidopsis Rab GTPase homolog A6b); GTP binding. similar to AtRABA6a (Arabidopsis Rab GTPase homolog A6a), GTP binding [Arabidopsis thaliana] (TAIR:AT1G73640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68179.1); contains InterPro domain Ran GTPase; (InterPro:IPR002041); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras Range:  from: 6265409    to: 6266930    Orientation: Reverse Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.
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