Number of predicted smallRNA regulated genes (italicized): 1

Number of predicted smallRNA regulated genes (italicized): 1

Genes (AGI) At4g37630.1

Number of predicted miRNA regulated genes (bold): 3

Number of predicted miRNA regulated genes (bold): 3

Genes (AGI) At3g12280.1 At4g28980.1 At4g37630.1

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Region Color Legend:  Exon region   Intron region   UTR region

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Factor Number of genes Family Sum of TFBSs in total Theoretical Number of TFBSs Ratio (occurrence/ theoretical) AHL12(3) 6 32 0 0 AHL20(2) 6 AT-Hook 79 57.6 1.37 AHL25(3) 6 204 0 0 ALFIN1 6 HD-PHD 17 15.11 1.12 ANAC46 6 NAC 42 35.76 1.17 ANAC58 6 NAC 66 38.47 1.72 ARR11(3) 6 GARP/ARR-B 34 37.84 0.9 ARR14(2) 6 GARP/ARR-B 35 36.72 0.95 At4g35610 6 C2H2(Zn) 27 34.8 0.78 DOF2 6 C2C2(Zn) Dof 54 50.94 1.06 GAMYB 6 MYB 8 8.74 0.92 GLK1(2) 6 GARP 14 12.43 1.13 GT1 6 Trihelix 42 39.85 1.05 HVH21 6 HD-KNOTTED 21 14.58 1.44 ICU4 6 HD-ZIP 20 22.81 0.88 LBD16 6 LOB/AS2 32 20.74 1.54 NtERF2 6 AP2/EREBP 34 12.88 2.64 TOE1(3) 6 AP2/EREBP 7 5.63 1.24 TOE2(3) 6 AP2/EREBP 22 19.29 1.14 TSS 6 - other 7 0.69 10.21 WOX13(1) 6 HD-HOX 9 7.07 1.27 YAB1 6 C2C2(Zn)YABBY 58 58.67 0.99 ZmHOX2a(1) 6 HD-HOX 18 20.91 0.86 AGL15 5 MADS 15 7.28 2.06 AHL12(2) 5 22 0 0 At5g28300 5 Trihelix 10 2.9 3.45 ATHB12 5 HD-ZIP 12 15.5 0.77 AtMYB61 5 MYB 8 6 1.33 DEAR3(1) 5 AP2/EREBP 16 6.82 2.35 MYB46(1) 5 MYB 12 10.5 1.14 MYB46(3) 5 MYB 14 16.16 0.87 MYB52(1) 5 MYB 14 13.73 1.02 MYB59 5 MYB 8 4.98 1.61 MYB83 5 MYB 12 10.5 1.14 RVE1(1) 5 MYB 6 1.86 3.22 TEIL 5 AP2/EREBP 14 16.67 0.84 ZAT18 5 C2H2(Zn) 16 9.26 1.73 AHL12(1) 4 30 0 0 AHL20(1) 4 AT-Hook 10 12.95 0.77 ANAC55(1) 4 NAC 5 2.11 2.37 ANAC55(2) 4 NAC 16 12.64 1.27 ATERF1(1) 4 AP2/EREBP 12 4.17 2.88 DAG2 4 C2C2(Zn) Dof 10 8.96 1.12 GLK1(1) 4 GARP 10 9.91 1.01 HSFB2a(1) 4 HSF 13 4 3.25 HSFB2a(2) 4 HSF 9 12.21 0.74 RAP2.6(2) 4 AP2/EREBP 5 2.2 2.28 RAV1(1) 4 AP2/EREBP 6 8.6 0.7 ZAT6 4 C2H2(Zn) 6 5.76 1.04 ZmHOX2a(2) 4 HD-HOX 10 13.72 0.73 AGL1 3 MADS 5 2.99 1.67 AGL2 3 MADS 3 1.53 1.96 ARR10 3 GARP 5 4.24 1.18 ATERF1(2) 3 AP2/EREBP 5 1.27 3.92 ATHB51 3 HD-ZIP 5 3.86 1.3 CCA1(1) 3 MYB 3 1.08 2.78 CCA1(2) 3 MYB 4 9.21 0.43 ETT(1) 3 ARF 3 0.69 4.35 P 3 MYB 6 5.81 1.03 RAP2.3(3) 3 AP2/EREBP 4 0.75 5.32 RAV1(2) 3 AP2/EREBP 5 6.36 0.79 smallRNA(se3) 3 small RNAs 13 9.21 1.41 smallRNA(si3) 3 small RNAs 26 13.03 2 SPL7 3 SBP 5 3.77 1.33 ZAT2 3 C2H2(Zn) 6 9.8 0.61 ZAT14 3 C2H2(Zn) 4 12.5 0.32 AG 2 MADS 3 1.28 2.34 ARR11(1) 2 GARP/ARR-B 2 1.35 1.49 ARR14(1) 2 GARP/ARR-B 2 0.82 2.45 AtSPL3 2 SBP 3 2.07 1.45 AtSPL8 2 SBP 3 4.06 0.74 bZIP_DOF 2 - other 4 2.28 1.76 CBF 2 - other 3 30.87 0.1 DEAR3(2) 2 AP2/EREBP 4 1.83 2.19 DOF5.7(2) 2 C2C2(Zn) Dof 4 1.71 2.34 ETT(2) 2 ARF 5 1.71 2.93 HOX2a_HOX2a 2 - other 6 4.89 1.23 HSFC1(2) 2 HSF 4 3.84 1.04 ID1 2 C2H2(Zn) 2 4.34 0.46 MYB52(2) 2 MYB 2 3.53 0.57 MYC_MYB 2 - other 2 1.03 1.94 O2 2 bZIP 9 4.81 1.87 ORA47(2) 2 AP2/EREBP 2 0.37 5.4 PCF2 2 TCP 3 1.03 2.9 RAP2.2 2 AP2/EREBP 2 0.19 10.28 RAP2.3(1) 2 AP2/EREBP 2 1.37 1.46 RAP2.6(3) 2 AP2/EREBP 3 1.28 2.35 smallRNA(i) 2 small RNAs 8 6.75 1.19 smallRNA(i2) 2 small RNAs 11 4.72 2.33 smallRNA(s) 2 small RNAs 13 4.41 2.95 TBF1 2 HSF 2 0.92 2.18 TGA1 2 bZIP 4 1.48 2.7 TGA1a 2 bZIP 9 3.93 2.29 TOE1(2) 2 AP2/EREBP 2 3.59 0.56 WRKY12 2 WRKY(Zn) 2 1.75 1.14 WRKY38(1) 2 WRKY(Zn) 2 1.75 1.14 AGL3 1 MADS 1 2.03 0.49 AtERF-3 1 AP2/EREBP 1 0.05 19.99 AtERF-4 1 AP2/EREBP 1 0.05 18.23 ATHB1 1 HD-ZIP 1 1.84 0.54 AtMYB77 1 MYB 1 0.49 2.03 bZIP60(1) 1 bZIP 2 2.7 0.74 DREB2C(2) 1 AP2/EREBP 1 0.6 1.67 E2Fa 1 E2F/DP 1 0.06 15.69 E2Fb 1 E2F/DP 1 0.02 59.7 E2Fc 1 E2F/DP 1 0.08 13.11 E2Fd 1 E2F/DP 1 0.08 13.11 E2Fe 1 E2F/DP 1 0.01 91.2 E2Ff 1 E2F/DP 1 0 316.82 ERF1 1 AP2/EREBP 1 0.42 2.38 HAHB4 1 HD-ZIP 1 2.51 0.4 KAN4(2) 1 GARP 2 1.43 1.4 MADS_MADS 1 - other 3 0.86 3.51 MYB.PH3(1) 1 MYB 1 0.24 4.24 MYB2 1 MYB 1 0.15 6.69 MYB46(2) 1 MYB 1 1.47 0.68 MYB111(1) 1 MYB 1 1.64 0.61 MYC3 1 bHLH 2 4.05 0.49 PCF5 1 TCP 1 0.39 2.57 RAP2.3(2) 1 AP2/EREBP 1 0.77 1.3 RAV 1 - other 1 0.79 1.27 REM1(2) 1 ABI3/VP1 1 1.18 0.85 RRTF1(1) 1 AP2/EREBP 1 0.28 3.61 smallRNA(fl3) 1 small RNAs 18 9.48 1.9 smallRNA(l2) 1 small RNAs 2 1 2 smallRNA(le3) 1 small RNAs 24 8.51 2.82 smallRNA(s2) 1 small RNAs 3 1.41 2.13 TaNAC69(2) 1 NAC 1 0.85 1.17 TCP11(1) 1 TCP 1 0.06 17.08 TCP11(2) 1 TCP 1 0.02 52.42 TCP15(1) 1 TCP 1 0.12 8.24 TCP15(2) 1 TCP 1 0.04 24.91 TCP16(1) 1 TCP 1 0.11 9.44 TCP16(2) 1 TCP 1 0.05 18.2 TCP20 1 TCP 1 0.19 5.28 TCP23 1 TCP 1 0.03 35.72 TGA2(1) 1 bZIP 2 0.46 4.34 TGA2(2) 1 bZIP 1 0.33 3.02 TOE2(2) 1 AP2/EREBP 1 1.77 0.56 WRI1 1 AP2/EREBP 1 1.1 0.91 WRKY18(1) 1 WRKY(Zn) 1 1.55 0.65

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Factor Number of genes Family Sum of TFBSs in total Theoretical Number of TFBSs Ratio (occurrence/ theoretical) AHL12(3) 6 32 0 0 AHL20(2) 6 AT-Hook 79 57.6 1.37 AHL25(3) 6 204 0 0 ALFIN1 6 HD-PHD 17 15.11 1.12 ANAC46 6 NAC 42 35.76 1.17 ANAC58 6 NAC 66 38.47 1.72 ARR11(3) 6 GARP/ARR-B 34 37.84 0.9 ARR14(2) 6 GARP/ARR-B 35 36.72 0.95 At4g35610 6 C2H2(Zn) 27 34.8 0.78 DOF2 6 C2C2(Zn) Dof 54 50.94 1.06 GAMYB 6 MYB 8 8.74 0.92 GLK1(2) 6 GARP 14 12.43 1.13 GT1 6 Trihelix 42 39.85 1.05 HVH21 6 HD-KNOTTED 21 14.58 1.44 ICU4 6 HD-ZIP 20 22.81 0.88 LBD16 6 LOB/AS2 32 20.74 1.54 NtERF2 6 AP2/EREBP 34 12.88 2.64 TOE1(3) 6 AP2/EREBP 7 5.63 1.24 TOE2(3) 6 AP2/EREBP 22 19.29 1.14 TSS 6 - other 7 0.69 10.21 WOX13(1) 6 HD-HOX 9 7.07 1.27 YAB1 6 C2C2(Zn)YABBY 58 58.67 0.99 ZmHOX2a(1) 6 HD-HOX 18 20.91 0.86 AGL15 5 MADS 15 7.28 2.06 AHL12(2) 5 22 0 0 At5g28300 5 Trihelix 10 2.9 3.45 ATHB12 5 HD-ZIP 12 15.5 0.77 AtMYB61 5 MYB 8 6 1.33 DEAR3(1) 5 AP2/EREBP 16 6.82 2.35 MYB46(1) 5 MYB 12 10.5 1.14 MYB46(3) 5 MYB 14 16.16 0.87 MYB52(1) 5 MYB 14 13.73 1.02 MYB59 5 MYB 8 4.98 1.61 MYB83 5 MYB 12 10.5 1.14 RVE1(1) 5 MYB 6 1.86 3.22 TEIL 5 AP2/EREBP 14 16.67 0.84 ZAT18 5 C2H2(Zn) 16 9.26 1.73 AHL12(1) 4 30 0 0 AHL20(1) 4 AT-Hook 10 12.95 0.77 ANAC55(1) 4 NAC 5 2.11 2.37 ANAC55(2) 4 NAC 16 12.64 1.27 ATERF1(1) 4 AP2/EREBP 12 4.17 2.88 DAG2 4 C2C2(Zn) Dof 10 8.96 1.12 GLK1(1) 4 GARP 10 9.91 1.01 HSFB2a(1) 4 HSF 13 4 3.25 HSFB2a(2) 4 HSF 9 12.21 0.74 RAP2.6(2) 4 AP2/EREBP 5 2.2 2.28 RAV1(1) 4 AP2/EREBP 6 8.6 0.7 ZAT6 4 C2H2(Zn) 6 5.76 1.04 ZmHOX2a(2) 4 HD-HOX 10 13.72 0.73 AGL1 3 MADS 5 2.99 1.67 AGL2 3 MADS 3 1.53 1.96 ARR10 3 GARP 5 4.24 1.18 ATERF1(2) 3 AP2/EREBP 5 1.27 3.92 ATHB51 3 HD-ZIP 5 3.86 1.3 CCA1(1) 3 MYB 3 1.08 2.78 CCA1(2) 3 MYB 4 9.21 0.43 ETT(1) 3 ARF 3 0.69 4.35 P 3 MYB 6 5.81 1.03 RAP2.3(3) 3 AP2/EREBP 4 0.75 5.32 RAV1(2) 3 AP2/EREBP 5 6.36 0.79 smallRNA(se3) 3 small RNAs 13 9.21 1.41 smallRNA(si3) 3 small RNAs 26 13.03 2 SPL7 3 SBP 5 3.77 1.33 ZAT2 3 C2H2(Zn) 6 9.8 0.61 ZAT14 3 C2H2(Zn) 4 12.5 0.32 AG 2 MADS 3 1.28 2.34 ARR11(1) 2 GARP/ARR-B 2 1.35 1.49 ARR14(1) 2 GARP/ARR-B 2 0.82 2.45 AtSPL3 2 SBP 3 2.07 1.45 AtSPL8 2 SBP 3 4.06 0.74 bZIP_DOF 2 - other 4 2.28 1.76 CBF 2 - other 3 30.87 0.1 DEAR3(2) 2 AP2/EREBP 4 1.83 2.19 DOF5.7(2) 2 C2C2(Zn) Dof 4 1.71 2.34 ETT(2) 2 ARF 5 1.71 2.93 HOX2a_HOX2a 2 - other 6 4.89 1.23 HSFC1(2) 2 HSF 4 3.84 1.04 ID1 2 C2H2(Zn) 2 4.34 0.46 MYB52(2) 2 MYB 2 3.53 0.57 MYC_MYB 2 - other 2 1.03 1.94 O2 2 bZIP 9 4.81 1.87 ORA47(2) 2 AP2/EREBP 2 0.37 5.4 PCF2 2 TCP 3 1.03 2.9 RAP2.2 2 AP2/EREBP 2 0.19 10.28 RAP2.3(1) 2 AP2/EREBP 2 1.37 1.46 RAP2.6(3) 2 AP2/EREBP 3 1.28 2.35 smallRNA(i) 2 small RNAs 8 6.75 1.19 smallRNA(i2) 2 small RNAs 11 4.72 2.33 smallRNA(s) 2 small RNAs 13 4.41 2.95 TBF1 2 HSF 2 0.92 2.18 TGA1 2 bZIP 4 1.48 2.7 TGA1a 2 bZIP 9 3.93 2.29 TOE1(2) 2 AP2/EREBP 2 3.59 0.56 WRKY12 2 WRKY(Zn) 2 1.75 1.14 WRKY38(1) 2 WRKY(Zn) 2 1.75 1.14 AGL3 1 MADS 1 2.03 0.49 AtERF-3 1 AP2/EREBP 1 0.05 19.99 AtERF-4 1 AP2/EREBP 1 0.05 18.23 ATHB1 1 HD-ZIP 1 1.84 0.54 AtMYB77 1 MYB 1 0.49 2.03 bZIP60(1) 1 bZIP 2 2.7 0.74 DREB2C(2) 1 AP2/EREBP 1 0.6 1.67 E2Fa 1 E2F/DP 1 0.06 15.69 E2Fb 1 E2F/DP 1 0.02 59.7 E2Fc 1 E2F/DP 1 0.08 13.11 E2Fd 1 E2F/DP 1 0.08 13.11 E2Fe 1 E2F/DP 1 0.01 91.2 E2Ff 1 E2F/DP 1 0 316.82 ERF1 1 AP2/EREBP 1 0.42 2.38 HAHB4 1 HD-ZIP 1 2.51 0.4 KAN4(2) 1 GARP 2 1.43 1.4 MADS_MADS 1 - other 3 0.86 3.51 MYB.PH3(1) 1 MYB 1 0.24 4.24 MYB2 1 MYB 1 0.15 6.69 MYB46(2) 1 MYB 1 1.47 0.68 MYB111(1) 1 MYB 1 1.64 0.61 MYC3 1 bHLH 2 4.05 0.49 PCF5 1 TCP 1 0.39 2.57 RAP2.3(2) 1 AP2/EREBP 1 0.77 1.3 RAV 1 - other 1 0.79 1.27 REM1(2) 1 ABI3/VP1 1 1.18 0.85 RRTF1(1) 1 AP2/EREBP 1 0.28 3.61 smallRNA(fl3) 1 small RNAs 18 9.48 1.9 smallRNA(l2) 1 small RNAs 2 1 2 smallRNA(le3) 1 small RNAs 24 8.51 2.82 smallRNA(s2) 1 small RNAs 3 1.41 2.13 TaNAC69(2) 1 NAC 1 0.85 1.17 TCP11(1) 1 TCP 1 0.06 17.08 TCP11(2) 1 TCP 1 0.02 52.42 TCP15(1) 1 TCP 1 0.12 8.24 TCP15(2) 1 TCP 1 0.04 24.91 TCP16(1) 1 TCP 1 0.11 9.44 TCP16(2) 1 TCP 1 0.05 18.2 TCP20 1 TCP 1 0.19 5.28 TCP23 1 TCP 1 0.03 35.72 TGA2(1) 1 bZIP 2 0.46 4.34 TGA2(2) 1 bZIP 1 0.33 3.02 TOE2(2) 1 AP2/EREBP 1 1.77 0.56 WRI1 1 AP2/EREBP 1 1.1 0.91 WRKY18(1) 1 WRKY(Zn) 1 1.55 0.65 ABF1 0 bZIP 0 0.07 0 ABI3 0 ABI3/VP1 0 0.03 0 ABI4(1) 0 AP2/EREBP 0 0.35 0 ABI4(2) 0 AP2/EREBP 0 0.33 0 ABI5 0 bZIP 0 0.02 0 AGL20 0 MADS 0 0.02 0 AGL22 0 MADS 0 0.02 0 AGL24 0 MADS 0 0.02 0 AGL25 0 MADS 0 0.01 0 AGP1 0 GATA 0 3 0 ANAC019 0 NAC 0 0 0 ANAC055 0 NAC 0 0 0 ANAC072 0 NAC 0 0 0 ANAC81 0 NAC 0 0.66 0 ANT 0 AP2/EREBP 0 0.01 0 AREB1 0 bZIP 0 0 0 AREB2 0 bZIP 0 0 0 ARF1 0 ABI3/VP1 0 0.13 0 ARR1 0 GARP/ARR-B 0 0.24 0 ARR14(3) 0 GARP/ARR-B 0 1.96 0 ARR2 0 GARP/ARR-B 0 0.38 0 At1g77200 0 AP2/EREBP 0 0.18 0 AtbZIP1 0 bZIP 0 0.01 0 AtCCA1 0 MYB 0 0.01 0 AtERF-1 0 AP2/EREBP 0 0.02 0 AtERF-2 0 AP2/EREBP 0 0.02 0 AtERF-5 0 AP2/EREBP 0 0.02 0 AtERF-7 0 AP2/EREBP 0 0.01 0 ATHB5 0 HD-ZIP 0 0.2 0 ATHB9 0 HD-ZIP 0 0.01 0 AtLEC2 0 ABI3/VP1 0 3.86 0 AtLHY 0 MYB 0 0.01 0 ATML1 0 HD-ZIP 0 0 0 AtMYB15 0 MYB 0 0.01 0 AtMYB44 0 MYB 0 0.01 0 AtMYB84 0 MYB 0 0.01 0 AtMYC2 0 bHLH 0 0.02 0 AtSR1 0 CAMTA 0 0.01 0 AtTINY2 0 AP2/EREBP 0 0.02 0 AtWER 0 MYB 0 0.02 0 bZIP_bZIP 0 - other 0 0.03 0 BZIP12 0 bZIP 0 0 0 bZIP19 0 bZIP 0 0.01 0 bZIP23 0 bZIP 0 0.01 0 bZIP60(2) 0 bZIP 0 1.78 0 bZIP910(1) 0 bZIP 0 0.01 0 bZIP910(2) 0 bZIP 0 0.01 0 bZIP911(1) 0 bZIP 0 0 0 bZIP911(2) 0 bZIP 0 0 0 CAMTA1 0 CAMTA 0 0 0 CAMTA2 0 CAMTA 0 0 0 CAMTA3 0 CAMTA 0 0.02 0 CAMTA5 0 CAMTA 0 0 0 CBP60g 0 CAMTA-like 0 0.08 0 CDC5 0 MYB 0 0.32 0 DDF1 0 AP2/EREBP 0 0.13 0 DEAR4(1) 0 AP2/EREBP 0 0.14 0 DEAR4(2) 0 AP2/EREBP 0 0.39 0 DREB1A 0 AP2/EREBP 0 0.02 0 DREB1B 0 AP2/EREBP 0 0 0 DREB1C 0 AP2/EREBP 0 0 0 DREB2A 0 AP2/EREBP 0 0.01 0 DREB2C(1) 0 AP2/EREBP 0 0.05 0 DYT1 0 bHLH 0 0.04 0 EIN3 0 AP2/EREBP 0 0.06 0 FUS3 0 ABI3/VP1 0 0.03 0 GATA-1 0 C2C2(Zn) GATA 0 0.27 0 GATA-2 0 C2C2(Zn) GATA 0 0.12 0 GATA-3 0 C2C2(Zn) GATA 0 0.12 0 GATA-4 0 C2C2(Zn) GATA 0 0.12 0 GRF7 0 GRF 0 0.17 0 GT-1 0 Trihelix 0 0.1 0 GT-2 0 Trihelix 0 0.01 0 GT-3b 0 Trihelix 0 0.14 0 HSFC1(1) 0 HSF 0 1.11 0 HY5 0 bZIP 0 0.07 0 KAN4(1) 0 GARP 0 0.86 0 LFY 0 LFY 0 0.72 0 MIR156A-F 0 MIR156 0 0.01 0 MIR156G 0 MIR156 0 0.01 0 MIR156H 0 MIR156 0 0.01 0 MIR157A-C 0 MIR157 0 0.01 0 MIR157D 0 MIR157 0 0.01 0 MIR158A 0 MIR158 0 0.01 0 MIR158B 0 MIR158 0 0 0 MIR159A 0 MIR159 0 0.01 0 MIR159B 0 MIR159 0 0.01 0 MIR159C 0 MIR159 0 0.01 0 MIR160A-C 0 MIR160 0 0 0 MIR161.1 0 MIR161 0 0.01 0 MIR161.2 0 MIR161 0 0.01 0 MIR162A/B 0 MIR162 0 0 0 MIR163 0 MIR163 0 0.01 0 MIR164A/B 0 MIR164 0 0.01 0 MIR164C 0 MIR164 0 0.01 0 MIR165A/B 0 MIR165 0 0 0 MIR166A-G 0 MIR166 0 0.01 0 MIR167A/B 0 MIR167 0 0.01 0 MIR167C 0 MIR167 0 0.01 0 MIR167D 0 MIR167 0 0.01 0 MIR168A/B 0 MIR168 0 0 0 MIR169A 0 MIR169 0 0.01 0 MIR169B/C 0 MIR169 0 0 0 MIR169D-G 0 MIR169 0 0.01 0 MIR169G* 0 MIR169 0 0 0 MIR169H-N 0 MIR169 0 0.01 0 MIR170 0 MIR170 0 0.01 0 MIR171A 0 MIR171 0 0 0 MIR171B/C 0 MIR171 0 0.01 0 MIR172A/B 0 MIR172 0 0.01 0 MIR172B* 0 MIR172 0 0.01 0 MIR172C/D 0 MIR172 0 0.01 0 MIR172E 0 MIR172 0 0.01 0 MIR173 0 MIR173 0 0.01 0 MIR1886.1 0 MIR1886 0 0.01 0 MIR1886.2 0 MIR1886 0 0.01 0 MIR1886.3 0 MIR1886 0 0.01 0 MIR1887 0 MIR1887 0 0.01 0 MIR1888 0 MIR1888 0 0.01 0 MIR2111A* 0 MIR2111 0 0 0 MIR2111A/B 0 MIR2111 0 0.01 0 MIR2111B* 0 MIR2111 0 0.01 0 MIR2112-3P 0 MIR2112 0 0.01 0 MIR2112-5P 0 MIR2112 0 0.01 0 MIR2933A/B 0 MIR2933 0 0.01 0 MIR2934 0 MIR2934 0 0.01 0 MIR2935 0 MIR2935 0 0.01 0 MIR2936 0 MIR2936 0 0.01 0 MIR2937 0 MIR2937 0 0.01 0 MIR2938 0 MIR2938 0 0.01 0 MIR2939 0 MIR2939 0 0.01 0 MIR319A/B 0 MIR319 0 0.01 0 MIR319C 0 MIR319 0 0.01 0 MIR3434 0 MIR3434 0 0.01 0 MIR3434* 0 MIR3434 0 0.01 0 MIR3440B-3P 0 MIR3440 0 0.01 0 MIR3440B-5P 0 MIR3440 0 0.01 0 MIR390A/B 0 MIR390 0 0.01 0 MIR391 0 MIR391 0 0.01 0 MIR3932A/B 0 MIR3932 0 0.01 0 MIR3933 0 MIR3933 0 0.01 0 MIR393A/B 0 MIR393 0 0 0 MIR394A/B 0 MIR394 0 0.01 0 MIR395A/D/E 0 MIR395 0 0.01 0 MIR395B/C/F 0 MIR395 0 0.01 0 MIR396A 0 MIR396 0 0.01 0 MIR396B 0 MIR396 0 0.01 0 MIR397A 0 MIR397 0 0.01 0 MIR397B 0 MIR397 0 0.01 0 MIR398A 0 MIR398 0 0.01 0 MIR398B/C 0 MIR398 0 0 0 MIR399A 0 MIR399 0 0.01 0 MIR399B/C 0 MIR399 0 0.01 0 MIR399D 0 MIR399 0 0 0 MIR399E 0 MIR399 0 0.01 0 MIR399F 0 MIR399 0 0.01 0 MIR400 0 MIR400 0 0.01 0 MIR401 0 MIR401 0 0.01 0 MIR402 0 MIR402 0 0.01 0 MIR403 0 MIR403 0 0.01 0 MIR404 0 MIR404 0 0 0 MIR405A/B/D 0 MIR405 0 0 0 MIR406 0 MIR406 0 0.01 0 MIR407 0 MIR407 0 0.01 0 MIR408 0 MIR408 0 0 0 MIR413 0 MIR413 0 0.01 0 MIR414 0 MIR414 0 0.01 0 MIR415 0 MIR415 0 0.01 0 MIR416 0 MIR416 0 0.01 0 MIR417 0 MIR417 0 0.01 0 MIR418 0 MIR418 0 0.01 0 MIR419 0 MIR419 0 0.01 0 MIR420 0 MIR420 0 0.01 0 MIR4221 0 MIR4221 0 0.01 0 MIR4227 0 MIR4227 0 0.01 0 MIR4228 0 MIR4228 0 0.01 0 MIR4239 0 MIR4239 0 0.01 0 MIR4240 0 MIR4240 0 0.01 0 MIR4243 0 MIR4243 0 0.01 0 MIR426 0 MIR426 0 0.01 0 MIR447A/B 0 MIR447 0 0.01 0 MIR447C 0 MIR447 0 0.01 0 MIR472 0 MIR472 0 0.01 0 MIR771 0 MIR771 0 0 0 MIR773 0 MIR773 0 0.01 0 MIR773B 0 MIR773 0 0.01 0 MIR773B* 0 MIR773 0 0.01 0 MIR774 0 MIR774 0 0.01 0 MIR774B 0 MIR774 0 0.01 0 MIR774B* 0 MIR774 0 0.01 0 MIR775 0 MIR775 0 0.01 0 MIR776 0 MIR776 0 0.01 0 MIR777 0 MIR777 0 0 0 MIR778 0 MIR778 0 0.01 0 MIR779.1 0 MIR779 0 0.01 0 MIR779.2 0 MIR779 0 0.01 0 MIR780.1 0 MIR780 0 0.01 0 MIR780.2 0 MIR780 0 0.01 0 MIR781 0 MIR781 0 0.01 0 MIR782 0 MIR782 0 0.01 0 MIR783 0 MIR783 0 0.01 0 MIR822 0 MIR822 0 0.01 0 MIR823 0 MIR823 0 0.01 0 MIR824 0 MIR824 0 0.01 0 MIR825 0 MIR825 0 0.01 0 MIR826 0 MIR826 0 0.01 0 MIR827 0 MIR827 0 0.01 0 MIR828 0 MIR828 0 0.01 0 MIR829.1 0 MIR829 0 0.01 0 MIR829.2 0 MIR829 0 0.01 0 MIR830 0 MIR830 0 0.01 0 MIR830* 0 MIR830 0 0.01 0 MIR831 0 MIR831 0 0.01 0 MIR832-3P 0 MIR832 0 0.01 0 MIR832-5P 0 MIR832 0 0.01 0 MIR833-3P 0 MIR833 0 0.01 0 MIR833-5P 0 MIR833 0 0.01 0 MIR834 0 MIR834 0 0.01 0 MIR835-3P 0 MIR835 0 0.01 0 MIR835-5P 0 MIR835 0 0.01 0 MIR836 0 MIR836 0 0 0 MIR837-3P 0 MIR837 0 0.01 0 MIR837-5P 0 MIR837 0 0.01 0 MIR838 0 MIR838 0 0.01 0 MIR839 0 MIR839 0 0 0 MIR840 0 MIR840 0 0.01 0 MIR841 0 MIR841 0 0.01 0 MIR841B 0 MIR841 0 0.01 0 MIR841B* 0 MIR841 0 0.01 0 MIR842 0 MIR842 0 0.01 0 MIR843 0 MIR843 0 0.01 0 MIR844 0 MIR844 0 0.01 0 MIR844* 0 MIR844 0 0.01 0 MIR845A 0 MIR845 0 0.01 0 MIR845B 0 MIR845 0 0.01 0 MIR846 0 MIR846 0 0.01 0 MIR847 0 MIR847 0 0.01 0 MIR848 0 MIR848 0 0 0 MIR849 0 MIR849 0 0.01 0 MIR850 0 MIR850 0 0.01 0 MIR851-3P 0 MIR851 0 0.01 0 MIR851-5P 0 MIR851 0 0 0 MIR852 0 MIR852 0 0.01 0 MIR853 0 MIR853 0 0 0 MIR854A-E 0 MIR854 0 0.01 0 MIR855 0 MIR855 0 0.01 0 MIR856 0 MIR856 0 0.01 0 MIR857 0 MIR857 0 0.01 0 MIR858 0 MIR858 0 0.01 0 MIR859 0 MIR859 0 0.01 0 MIR860 0 MIR860 0 0.01 0 MIR861-3P 0 MIR861 0 0.01 0 MIR861-5P 0 MIR861 0 0.01 0 MIR862-3P 0 MIR862 0 0.01 0 MIR862-5P 0 MIR862 0 0 0 MIR863-3P 0 MIR863 0 0.01 0 MIR863-5P 0 MIR863 0 0.01 0 MIR864-3P 0 MIR864 0 0.01 0 MIR864-5P 0 MIR864 0 0.01 0 MIR865-3P 0 MIR865 0 0.01 0 MIR865-5P 0 MIR865 0 0.01 0 MIR866-3P 0 MIR866 0 0.01 0 MIR866-5P 0 MIR866 0 0.01 0 MIR867 0 MIR867 0 0.01 0 MIR868 0 MIR868 0 0.01 0 MIR869.1 0 MIR869 0 0.01 0 MIR869.2 0 MIR869 0 0.01 0 MIR870 0 MIR870 0 0.01 0 MYB.PH3(2) 0 MYB 0 0.21 0 MYB1 0 MYB 0 0.03 0 MYB111(2) 0 MYB 0 1.18 0 MYB55(1) 0 MYB 0 0.62 0 MYB55(2) 0 MYB 0 1.97 0 MYB61 0 MYB 0 0 0 MYB80 0 MYB 0 0.1 0 MYB98 0 MYB 0 0.29 0 MYC2 0 bHLH 0 2.02 0 MYC4 0 bHLH 0 0.68 0 NAM 0 NAC 0 0.03 0 NAP 0 NAC 0 0.01 0 ORA47(1) 0 AP2/EREBP 0 0.23 0 OsbHLH66 0 bHLH 0 0.19 0 OsCBT 0 CAMTA 0 0.02 0 PDF2 0 HD-ZIP 0 0 0 PIF3(1) 0 bHLH 0 0.03 0 PIF3(2) 0 bHLH 0 0.03 0 PIF3(3) 0 bHLH 0 0.08 0 PIF4 0 bHLH 0 0.35 0 PIF5 0 bHLH 0 1.49 0 RAP2.6(1) 0 AP2/EREBP 0 0.14 0 REM1(1) 0 ABI3/VP1 0 2.42 0 RRTF1(2) 0 AP2/EREBP 0 0.24 0 RRTF1(3) 0 AP2/EREBP 0 0.23 0 SARD1 0 CAMTA-like 0 0.08 0 SPL1 0 SBP 0 0.01 0 SPL1(1) 0 SBP 0 0.07 0 SPL1(2) 0 SBP 0 0.07 0 SPL14 0 SBP 0 0.14 0 SPL4 0 SBP 0 0.02 0 SPL5 0 SBP 0 0.01 0 STF1 0 bZIP 0 0.26 0 STY1(1) 0 SRS 0 0.16 0 STY1(2) 0 SRS 0 0.76 0 SUP 0 C2H2(Zn) 0 0.01 0 TAC1 0 C2H2(Zn) 0 0.06 0 TaMYB80 0 MYB 0 0.71 0 TaNAC69(1) 0 NAC 0 0 0 TBP 0 - other 0 9.5 0 TOE1(1) 0 AP2/EREBP 0 0.42 0 TOE2(1) 0 AP2/EREBP 0 0.28 0 WRKY11 0 WRKY(Zn) 0 0.05 0 WRKY18 0 WRKY(Zn) 0 0.16 0 WRKY26 0 WRKY(Zn) 0 0.1 0 WRKY38 0 WRKY(Zn) 0 0.09 0 WRKY40 0 WRKY(Zn) 0 0.02 0 WRKY43 0 WRKY(Zn) 0 0.09 0 WRKY45 0 WRKY(Zn) 0 0.44 0 WRKY6 0 WRKY(Zn) 0 0.08 0 WRKY62 0 WRKY(Zn) 0 0.02 0 WRKY63 0 WRKY(Zn) 0 0.04 0 ZAP1 0 WRKY(Zn) 0 0.12 0 ZML2 0 GATA 0 0.35 0

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Gene Factor Family Number of TFBS Upstream orientation Downstream orientation + - + - At1g76540.1 AHL12(1) 4 2 2 0 0 At1g76540.1 AHL12(2) 1 0 1 0 0 At1g76540.1 AHL12(3) 12 4 8 0 0 At1g76540.1 AHL20(2) AT-Hook 12 5 7 0 0 At1g76540.1 AHL25(3) 34 19 15 0 0 At1g76540.1 ALFIN1 HD-PHD 1 0 1 0 0 At1g76540.1 ANAC46 NAC 5 2 3 0 0 At1g76540.1 ANAC55(2) NAC 2 1 1 0 0 At1g76540.1 ANAC58 NAC 16 6 10 0 0 At1g76540.1 ARR11(3) GARP/ARR-B 8 4 4 0 0 At1g76540.1 ARR14(2) GARP/ARR-B 8 3 4 0 1 At1g76540.1 At4g35610 C2H2(Zn) 5 2 3 0 0 At1g76540.1 At5g28300 Trihelix 1 1 0 0 0 At1g76540.1 ATHB12 HD-ZIP 3 1 2 0 0 At1g76540.1 ATHB51 HD-ZIP 1 1 0 0 0 At1g76540.1 AtMYB61 MYB 2 1 1 0 0 At1g76540.1 AtSPL8 SBP 1 0 1 0 0 At1g76540.1 CCA1(1) MYB 1 0 1 0 0 At1g76540.1 DAG2 C2C2(Zn) Dof 1 1 0 0 0 At1g76540.1 DEAR3(1) AP2/EREBP 1 0 1 0 0 At1g76540.1 DOF2 C2C2(Zn) Dof 13 8 4 1 0 At1g76540.1 GAMYB MYB 1 0 0 0 1 At1g76540.1 GLK1(1) GARP 2 2 0 0 0 At1g76540.1 GLK1(2) GARP 2 0 1 0 1 At1g76540.1 GT1 Trihelix 2 2 0 0 0 At1g76540.1 HSFB2a(2) HSF 2 1 1 0 0 At1g76540.1 HVH21 HD-KNOTTED 4 2 2 0 0 At1g76540.1 ICU4 HD-ZIP 4 3 1 0 0 At1g76540.1 ID1 C2H2(Zn) 1 1 0 0 0 At1g76540.1 LBD16 LOB/AS2 3 1 2 0 0 At1g76540.1 MYB2 MYB 1 0 1 0 0 At1g76540.1 MYB46(1) MYB 2 2 0 0 0 At1g76540.1 MYB52(1) MYB 1 0 0 0 1 At1g76540.1 MYB59 MYB 1 0 1 0 0 At1g76540.1 MYB83 MYB 2 2 0 0 0 At1g76540.1 NtERF2 AP2/EREBP 2 0 2 0 0 At1g76540.1 P MYB 1 0 1 0 0 At1g76540.1 PCF2 TCP 1 0 1 0 0 At1g76540.1 RAP2.6(2) AP2/EREBP 1 1 0 0 0 At1g76540.1 RAV1(1) AP2/EREBP 2 0 2 0 0 At1g76540.1 RVE1(1) MYB 1 0 1 0 0 At1g76540.1 TaNAC69(2) NAC 1 1 0 0 0 At1g76540.1 TEIL AP2/EREBP 2 1 1 0 0 At1g76540.1 TOE1(2) AP2/EREBP 1 1 0 0 0 At1g76540.1 TOE1(3) AP2/EREBP 1 1 0 0 0 At1g76540.1 TOE2(2) AP2/EREBP 1 1 0 0 0 At1g76540.1 TOE2(3) AP2/EREBP 5 1 3 0 1 At1g76540.1 TSS - other 1 0 1 At1g76540.1 WOX13(1) HD-HOX 1 0 1 0 0 At1g76540.1 WRKY38(1) WRKY(Zn) 1 1 0 0 0 At1g76540.1 YAB1 C2C2(Zn)YABBY 11 2 7 2 0 At1g76540.1 ZAT14 C2H2(Zn) 1 0 1 0 0 At1g76540.1 ZAT18 C2H2(Zn) 3 2 1 0 0 At1g76540.1 ZAT6 C2H2(Zn) 2 1 1 0 0 At1g76540.1 ZmHOX2a(1) HD-HOX 6 1 4 0 1 At1g76540.1 ZmHOX2a(2) HD-HOX 3 1 2 0 0 At3g12280.1 AGL1 MADS 1 1 0 0 0 At3g12280.1 AGL15 MADS 2 1 1 0 0 At3g12280.1 AGL2 MADS 1 1 0 0 0 At3g12280.1 AHL12(2) 1 1 0 0 0 At3g12280.1 AHL12(3) 1 0 1 0 0 At3g12280.1 AHL20(1) AT-Hook 2 1 1 0 0 At3g12280.1 AHL20(2) AT-Hook 5 2 3 0 0 At3g12280.1 AHL25(3) 8 3 4 0 1 At3g12280.1 ALFIN1 HD-PHD 4 1 3 0 0 At3g12280.1 ANAC46 NAC 15 6 8 0 1 At3g12280.1 ANAC55(1) NAC 2 1 1 0 0 At3g12280.1 ANAC55(2) NAC 9 4 5 0 0 At3g12280.1 ANAC58 NAC 12 10 2 0 0 At3g12280.1 ARR10 GARP 2 0 2 0 0 At3g12280.1 ARR11(1) GARP/ARR-B 1 0 1 0 0 At3g12280.1 ARR11(3) GARP/ARR-B 6 2 2 1 1 At3g12280.1 ARR14(1) GARP/ARR-B 1 0 1 0 0 At3g12280.1 ARR14(2) GARP/ARR-B 8 4 4 0 0 At3g12280.1 At4g35610 C2H2(Zn) 4 2 2 0 0 At3g12280.1 At5g28300 Trihelix 2 1 1 0 0 At3g12280.1 ATERF1(1) AP2/EREBP 2 0 2 0 0 At3g12280.1 ATERF1(2) AP2/EREBP 1 1 0 0 0 At3g12280.1 ATHB12 HD-ZIP 1 0 1 0 0 At3g12280.1 AtMYB61 MYB 1 1 0 0 0 At3g12280.1 AtSPL3 SBP 1 0 1 0 0 At3g12280.1 bZIP_DOF - other 3 3 0 At3g12280.1 bZIP60(1) bZIP 2 1 1 0 0 At3g12280.1 CBF - other 2 1 1 0 0 At3g12280.1 CCA1(1) MYB 1 1 0 0 0 At3g12280.1 CCA1(2) MYB 2 0 1 1 0 At3g12280.1 DEAR3(1) AP2/EREBP 3 1 2 0 0 At3g12280.1 DOF2 C2C2(Zn) Dof 4 1 2 0 1 At3g12280.1 DOF5.7(2) C2C2(Zn) Dof 2 1 1 0 0 At3g12280.1 E2Fa E2F/DP 1 1 0 0 0 At3g12280.1 E2Fb E2F/DP 1 1 0 0 0 At3g12280.1 E2Fc E2F/DP 1 1 0 0 0 At3g12280.1 E2Fd E2F/DP 1 1 0 0 0 At3g12280.1 E2Fe E2F/DP 1 1 0 0 0 At3g12280.1 E2Ff E2F/DP 1 1 0 0 0 At3g12280.1 ETT(1) ARF 1 1 0 0 0 At3g12280.1 GAMYB MYB 1 1 0 0 0 At3g12280.1 GLK1(2) GARP 1 1 0 0 0 At3g12280.1 GT1 Trihelix 5 2 2 0 1 At3g12280.1 HSFB2a(1) HSF 2 2 0 0 0 At3g12280.1 HSFB2a(2) HSF 4 1 1 1 1 At3g12280.1 HVH21 HD-KNOTTED 7 3 4 0 0 At3g12280.1 ICU4 HD-ZIP 1 0 1 0 0 At3g12280.1 LBD16 LOB/AS2 18 8 8 1 1 At3g12280.1 MYB46(1) MYB 1 1 0 0 0 At3g12280.1 MYB46(3) MYB 4 1 3 0 0 At3g12280.1 MYB52(1) MYB 5 4 1 0 0 At3g12280.1 MYB52(2) MYB 1 1 0 0 0 At3g12280.1 MYB59 MYB 2 1 1 0 0 At3g12280.1 MYB83 MYB 1 1 0 0 0 At3g12280.1 MYC_MYB - other 1 1 0 At3g12280.1 NtERF2 AP2/EREBP 12 4 7 1 0 At3g12280.1 O2 bZIP 8 4 4 0 0 At3g12280.1 PCF2 TCP 2 1 1 0 0 At3g12280.1 PCF5 TCP 1 1 0 0 0 At3g12280.1 RAP2.3(3) AP2/EREBP 1 0 1 0 0 At3g12280.1 RAP2.6(2) AP2/EREBP 2 0 1 1 0 At3g12280.1 RAP2.6(3) AP2/EREBP 2 1 1 0 0 At3g12280.1 RAV - other 1 1 0 At3g12280.1 RAV1(1) AP2/EREBP 2 1 1 0 0 At3g12280.1 RAV1(2) AP2/EREBP 3 0 3 0 0 At3g12280.1 REM1(2) ABI3/VP1 1 1 0 0 0 At3g12280.1 RVE1(1) MYB 1 1 0 0 0 At3g12280.1 SPL7 SBP 1 1 0 0 0 At3g12280.1 TCP11(1) TCP 1 1 0 0 0 At3g12280.1 TCP11(2) TCP 1 1 0 0 0 At3g12280.1 TCP15(1) TCP 1 1 0 0 0 At3g12280.1 TCP15(2) TCP 1 0 1 0 0 At3g12280.1 TCP16(1) TCP 1 1 0 0 0 At3g12280.1 TCP16(2) TCP 1 0 1 0 0 At3g12280.1 TCP20 TCP 1 1 0 0 0 At3g12280.1 TCP23 TCP 1 0 1 0 0 At3g12280.1 TEIL AP2/EREBP 4 3 1 0 0 At3g12280.1 TGA1 bZIP 3 3 0 0 0 At3g12280.1 TGA1a bZIP 8 4 4 0 0 At3g12280.1 TGA2(1) bZIP 2 1 1 0 0 At3g12280.1 TGA2(2) bZIP 1 0 1 0 0 At3g12280.1 TOE1(3) AP2/EREBP 2 0 1 0 1 At3g12280.1 TOE2(3) AP2/EREBP 2 0 1 0 1 At3g12280.1 TSS - other 2 1 1 At3g12280.1 WOX13(1) HD-HOX 1 1 0 0 0 At3g12280.1 WRI1 AP2/EREBP 1 1 0 0 0 At3g12280.1 YAB1 C2C2(Zn)YABBY 5 2 2 1 0 At3g12280.1 ZAT18 C2H2(Zn) 6 3 3 0 0 At3g12280.1 ZAT6 C2H2(Zn) 1 1 0 0 0 At3g12280.1 ZmHOX2a(1) HD-HOX 3 0 2 1 0 At3g12280.1 ZmHOX2a(2) HD-HOX 2 1 1 0 0 At4g28980.1 AGL15 MADS 2 1 1 0 0 At4g28980.1 AHL12(1) 2 1 1 0 0 At4g28980.1 AHL12(3) 1 0 1 0 0 At4g28980.1 AHL20(2) AT-Hook 5 2 3 0 0 At4g28980.1 AHL25(3) 12 6 6 0 0 At4g28980.1 ALFIN1 HD-PHD 2 0 2 0 0 At4g28980.1 ANAC46 NAC 5 2 3 0 0 At4g28980.1 ANAC58 NAC 8 0 8 0 0 At4g28980.1 ARR10 GARP 2 1 1 0 0 At4g28980.1 ARR11(1) GARP/ARR-B 1 1 0 0 0 At4g28980.1 ARR11(3) GARP/ARR-B 3 1 2 0 0 At4g28980.1 ARR14(1) GARP/ARR-B 1 1 0 0 0 At4g28980.1 ARR14(2) GARP/ARR-B 8 4 4 0 0 At4g28980.1 At4g35610 C2H2(Zn) 5 2 3 0 0 At4g28980.1 ATERF1(1) AP2/EREBP 7 2 2 1 2 At4g28980.1 ATERF1(2) AP2/EREBP 2 1 1 0 0 At4g28980.1 AtMYB61 MYB 3 1 2 0 0 At4g28980.1 CCA1(2) MYB 1 1 0 0 0 At4g28980.1 DAG2 C2C2(Zn) Dof 2 1 0 1 0 At4g28980.1 DEAR3(1) AP2/EREBP 9 3 2 3 1 At4g28980.1 DEAR3(2) AP2/EREBP 2 1 0 1 0 At4g28980.1 DOF2 C2C2(Zn) Dof 11 5 4 2 0 At4g28980.1 DOF5.7(2) C2C2(Zn) Dof 2 1 1 0 0 At4g28980.1 DREB2C(2) AP2/EREBP 1 0 1 0 0 At4g28980.1 ETT(2) ARF 3 1 1 0 1 At4g28980.1 GAMYB MYB 1 0 0 1 0 At4g28980.1 GLK1(1) GARP 4 2 2 0 0 At4g28980.1 GLK1(2) GARP 2 1 1 0 0 At4g28980.1 GT1 Trihelix 6 2 3 1 0 At4g28980.1 HOX2a_HOX2a - other 2 2 0 At4g28980.1 HSFB2a(1) HSF 3 1 2 0 0 At4g28980.1 HVH21 HD-KNOTTED 4 1 2 1 0 At4g28980.1 ICU4 HD-ZIP 2 0 2 0 0 At4g28980.1 LBD16 LOB/AS2 5 1 2 2 0 At4g28980.1 MYB46(1) MYB 2 1 1 0 0 At4g28980.1 MYB46(3) MYB 3 0 1 2 0 At4g28980.1 MYB52(1) MYB 3 0 2 1 0 At4g28980.1 MYB52(2) MYB 1 0 1 0 0 At4g28980.1 MYB59 MYB 2 1 1 0 0 At4g28980.1 MYB83 MYB 2 1 1 0 0 At4g28980.1 NtERF2 AP2/EREBP 13 4 6 2 1 At4g28980.1 ORA47(2) AP2/EREBP 1 0 1 0 0 At4g28980.1 P MYB 1 0 0 1 0 At4g28980.1 RAP2.2 AP2/EREBP 1 1 0 0 0 At4g28980.1 RAP2.3(1) AP2/EREBP 1 0 1 0 0 At4g28980.1 RAP2.3(3) AP2/EREBP 1 0 1 0 0 At4g28980.1 RAP2.6(2) AP2/EREBP 1 0 1 0 0 At4g28980.1 RAV1(2) AP2/EREBP 1 1 0 0 0 At4g28980.1 smallRNA(fl3) small RNAs 18 12 6 0 0 At4g28980.1 smallRNA(i) small RNAs 6 2 4 0 0 At4g28980.1 smallRNA(i2) small RNAs 9 5 4 0 0 At4g28980.1 smallRNA(l2) small RNAs 2 0 2 0 0 At4g28980.1 smallRNA(le3) small RNAs 24 7 17 0 0 At4g28980.1 smallRNA(s) small RNAs 11 6 5 0 0 At4g28980.1 smallRNA(s2) small RNAs 3 2 1 0 0 At4g28980.1 smallRNA(se3) small RNAs 9 6 3 0 0 At4g28980.1 smallRNA(si3) small RNAs 23 14 9 0 0 At4g28980.1 TBF1 HSF 1 1 0 0 0 At4g28980.1 TEIL AP2/EREBP 3 2 1 0 0 At4g28980.1 TOE1(2) AP2/EREBP 1 1 0 0 0 At4g28980.1 TOE1(3) AP2/EREBP 1 0 1 0 0 At4g28980.1 TOE2(3) AP2/EREBP 3 2 1 0 0 At4g28980.1 TSS - other 1 0 1 At4g28980.1 WOX13(1) HD-HOX 1 1 0 0 0 At4g28980.1 WRKY12 WRKY(Zn) 1 1 0 0 0 At4g28980.1 WRKY38(1) WRKY(Zn) 1 1 0 0 0 At4g28980.1 YAB1 C2C2(Zn)YABBY 4 4 0 0 0 At4g28980.1 ZAT18 C2H2(Zn) 3 1 2 0 0 At4g28980.1 ZAT2 C2H2(Zn) 2 1 1 0 0 At4g28980.1 ZmHOX2a(1) HD-HOX 3 0 3 0 0 At4g28980.1 ZmHOX2a(2) HD-HOX 3 1 2 0 0 At4g37630.1 AG MADS 1 1 0 0 0 At4g37630.1 AGL1 MADS 1 1 0 0 0 At4g37630.1 AGL15 MADS 2 1 1 0 0 At4g37630.1 AGL2 MADS 1 1 0 0 0 At4g37630.1 AHL12(1) 10 5 5 0 0 At4g37630.1 AHL12(2) 7 3 4 0 0 At4g37630.1 AHL12(3) 7 3 4 0 0 At4g37630.1 AHL20(1) AT-Hook 2 1 1 0 0 At4g37630.1 AHL20(2) AT-Hook 27 17 10 0 0 At4g37630.1 AHL25(3) 64 29 35 0 0 At4g37630.1 ALFIN1 HD-PHD 3 0 3 0 0 At4g37630.1 ANAC46 NAC 3 3 0 0 0 At4g37630.1 ANAC55(1) NAC 1 1 0 0 0 At4g37630.1 ANAC58 NAC 8 4 2 0 2 At4g37630.1 ARR11(3) GARP/ARR-B 7 3 4 0 0 At4g37630.1 ARR14(2) GARP/ARR-B 5 3 2 0 0 At4g37630.1 At4g35610 C2H2(Zn) 4 1 1 1 1 At4g37630.1 At5g28300 Trihelix 2 0 1 0 1 At4g37630.1 ATERF1(1) AP2/EREBP 2 1 1 0 0 At4g37630.1 ATERF1(2) AP2/EREBP 2 1 1 0 0 At4g37630.1 AtERF-3 AP2/EREBP 1 0 1 0 0 At4g37630.1 AtERF-4 AP2/EREBP 1 0 1 0 0 At4g37630.1 ATHB12 HD-ZIP 4 1 2 1 0 At4g37630.1 ATHB51 HD-ZIP 2 1 1 0 0 At4g37630.1 bZIP_DOF - other 1 1 0 At4g37630.1 DAG2 C2C2(Zn) Dof 2 2 0 0 0 At4g37630.1 DEAR3(1) AP2/EREBP 2 1 1 0 0 At4g37630.1 DOF2 C2C2(Zn) Dof 11 7 4 0 0 At4g37630.1 ERF1 AP2/EREBP 1 0 1 0 0 At4g37630.1 ETT(2) ARF 2 1 1 0 0 At4g37630.1 GAMYB MYB 1 1 0 0 0 At4g37630.1 GLK1(1) GARP 2 1 1 0 0 At4g37630.1 GLK1(2) GARP 1 0 1 0 0 At4g37630.1 GT1 Trihelix 8 4 4 0 0 At4g37630.1 HVH21 HD-KNOTTED 2 1 1 0 0 At4g37630.1 ICU4 HD-ZIP 5 3 2 0 0 At4g37630.1 LBD16 LOB/AS2 3 1 2 0 0 At4g37630.1 MYB.PH3(1) MYB 1 0 1 0 0 At4g37630.1 MYB46(3) MYB 2 2 0 0 0 At4g37630.1 MYB52(1) MYB 1 1 0 0 0 At4g37630.1 MYC_MYB - other 1 1 0 At4g37630.1 NtERF2 AP2/EREBP 5 3 2 0 0 At4g37630.1 O2 bZIP 1 0 1 0 0 At4g37630.1 ORA47(2) AP2/EREBP 1 0 1 0 0 At4g37630.1 RAP2.3(1) AP2/EREBP 1 0 1 0 0 At4g37630.1 RAP2.3(2) AP2/EREBP 1 0 1 0 0 At4g37630.1 RAP2.3(3) AP2/EREBP 2 1 1 0 0 At4g37630.1 RAP2.6(2) AP2/EREBP 1 0 1 0 0 At4g37630.1 RAP2.6(3) AP2/EREBP 1 1 0 0 0 At4g37630.1 RAV1(1) AP2/EREBP 1 1 0 0 0 At4g37630.1 RAV1(2) AP2/EREBP 1 0 1 0 0 At4g37630.1 RRTF1(1) AP2/EREBP 1 0 1 0 0 At4g37630.1 RVE1(1) MYB 1 0 1 0 0 At4g37630.1 TGA1 bZIP 1 0 1 0 0 At4g37630.1 TGA1a bZIP 1 0 1 0 0 At4g37630.1 TOE1(3) AP2/EREBP 1 1 0 0 0 At4g37630.1 TOE2(3) AP2/EREBP 2 2 0 0 0 At4g37630.1 TSS - other 1 0 1 At4g37630.1 WOX13(1) HD-HOX 2 1 1 0 0 At4g37630.1 YAB1 C2C2(Zn)YABBY 17 5 9 0 3 At4g37630.1 ZAT14 C2H2(Zn) 1 1 0 0 0 At4g37630.1 ZAT18 C2H2(Zn) 2 1 1 0 0 At4g37630.1 ZAT2 C2H2(Zn) 2 1 1 0 0 At4g37630.1 ZmHOX2a(1) HD-HOX 2 2 0 0 0 At5g11300.1 AG MADS 2 2 0 0 0 At5g11300.1 AGL1 MADS 3 3 0 0 0 At5g11300.1 AGL15 MADS 7 4 3 0 0 At5g11300.1 AGL2 MADS 1 1 0 0 0 At5g11300.1 AGL3 MADS 1 1 0 0 0 At5g11300.1 AHL12(1) 14 6 8 0 0 At5g11300.1 AHL12(2) 8 5 3 0 0 At5g11300.1 AHL12(3) 7 3 4 0 0 At5g11300.1 AHL20(1) AT-Hook 4 2 2 0 0 At5g11300.1 AHL20(2) AT-Hook 22 10 12 0 0 At5g11300.1 AHL25(3) 58 30 27 0 1 At5g11300.1 ALFIN1 HD-PHD 6 0 5 0 1 At5g11300.1 ANAC46 NAC 6 3 3 0 0 At5g11300.1 ANAC55(1) NAC 1 1 0 0 0 At5g11300.1 ANAC55(2) NAC 2 1 1 0 0 At5g11300.1 ANAC58 NAC 10 2 6 0 2 At5g11300.1 ARR11(3) GARP/ARR-B 7 4 3 0 0 At5g11300.1 ARR14(2) GARP/ARR-B 2 1 1 0 0 At5g11300.1 At4g35610 C2H2(Zn) 7 3 3 0 1 At5g11300.1 At5g28300 Trihelix 3 2 1 0 0 At5g11300.1 ATERF1(1) AP2/EREBP 1 0 1 0 0 At5g11300.1 ATHB1 HD-ZIP 1 0 1 0 0 At5g11300.1 ATHB12 HD-ZIP 2 0 2 0 0 At5g11300.1 ATHB51 HD-ZIP 2 1 1 0 0 At5g11300.1 AtMYB61 MYB 1 1 0 0 0 At5g11300.1 AtMYB77 MYB 1 1 0 0 0 At5g11300.1 AtSPL3 SBP 2 1 1 0 0 At5g11300.1 AtSPL8 SBP 2 1 1 0 0 At5g11300.1 CCA1(1) MYB 1 0 1 0 0 At5g11300.1 CCA1(2) MYB 1 0 1 0 0 At5g11300.1 DAG2 C2C2(Zn) Dof 5 2 3 0 0 At5g11300.1 DOF2 C2C2(Zn) Dof 6 4 2 0 0 At5g11300.1 ETT(1) ARF 1 1 0 0 0 At5g11300.1 GAMYB MYB 1 0 1 0 0 At5g11300.1 GLK1(2) GARP 5 2 3 0 0 At5g11300.1 GT1 Trihelix 14 6 8 0 0 At5g11300.1 HSFB2a(1) HSF 4 1 1 1 1 At5g11300.1 HSFB2a(2) HSF 2 1 1 0 0 At5g11300.1 HSFC1(2) HSF 2 1 1 0 0 At5g11300.1 HVH21 HD-KNOTTED 2 1 1 0 0 At5g11300.1 ICU4 HD-ZIP 6 2 4 0 0 At5g11300.1 LBD16 LOB/AS2 2 1 0 0 1 At5g11300.1 MADS_MADS - other 3 3 0 At5g11300.1 MYB111(1) MYB 1 0 1 0 0 At5g11300.1 MYB46(1) MYB 2 2 0 0 0 At5g11300.1 MYB46(3) MYB 1 1 0 0 0 At5g11300.1 MYB59 MYB 1 0 1 0 0 At5g11300.1 MYB83 MYB 2 2 0 0 0 At5g11300.1 NtERF2 AP2/EREBP 1 1 0 0 0 At5g11300.1 RAV1(1) AP2/EREBP 1 1 0 0 0 At5g11300.1 RVE1(1) MYB 2 1 1 0 0 At5g11300.1 smallRNA(i2) small RNAs 2 1 1 0 0 At5g11300.1 smallRNA(se3) small RNAs 2 2 0 0 0 At5g11300.1 smallRNA(si3) small RNAs 2 2 0 0 0 At5g11300.1 SPL7 SBP 2 1 1 0 0 At5g11300.1 TEIL AP2/EREBP 1 1 0 0 0 At5g11300.1 TOE1(3) AP2/EREBP 1 1 0 0 0 At5g11300.1 TOE2(3) AP2/EREBP 4 1 3 0 0 At5g11300.1 TSS - other 1 0 1 At5g11300.1 WOX13(1) HD-HOX 1 0 1 0 0 At5g11300.1 YAB1 C2C2(Zn)YABBY 12 7 5 0 0 At5g11300.1 ZAT14 C2H2(Zn) 2 1 1 0 0 At5g11300.1 ZAT18 C2H2(Zn) 2 1 1 0 0 At5g11300.1 ZAT2 C2H2(Zn) 2 1 1 0 0 At5g11300.1 ZAT6 C2H2(Zn) 2 1 1 0 0 At5g11300.1 ZmHOX2a(1) HD-HOX 1 1 0 0 0 At5g27620.1 AGL15 MADS 2 1 1 0 0 At5g27620.1 AHL12(2) 5 2 3 0 0 At5g27620.1 AHL12(3) 4 2 2 0 0 At5g27620.1 AHL20(1) AT-Hook 2 1 1 0 0 At5g27620.1 AHL20(2) AT-Hook 8 5 3 0 0 At5g27620.1 AHL25(3) 28 16 12 0 0 At5g27620.1 ALFIN1 HD-PHD 1 0 1 0 0 At5g27620.1 ANAC46 NAC 8 4 1 3 0 At5g27620.1 ANAC55(1) NAC 1 0 1 0 0 At5g27620.1 ANAC55(2) NAC 3 2 1 0 0 At5g27620.1 ANAC58 NAC 12 6 0 6 0 At5g27620.1 ARR10 GARP 1 1 0 0 0 At5g27620.1 ARR11(3) GARP/ARR-B 3 0 1 1 1 At5g27620.1 ARR14(2) GARP/ARR-B 4 2 2 0 0 At5g27620.1 At4g35610 C2H2(Zn) 2 1 1 0 0 At5g27620.1 At5g28300 Trihelix 2 2 0 0 0 At5g27620.1 ATHB12 HD-ZIP 2 2 0 0 0 At5g27620.1 AtMYB61 MYB 1 1 0 0 0 At5g27620.1 CBF - other 1 0 1 0 0 At5g27620.1 DEAR3(1) AP2/EREBP 1 1 0 0 0 At5g27620.1 DEAR3(2) AP2/EREBP 2 0 2 0 0 At5g27620.1 DOF2 C2C2(Zn) Dof 9 4 4 1 0 At5g27620.1 ETT(1) ARF 1 1 0 0 0 At5g27620.1 GAMYB MYB 3 0 3 0 0 At5g27620.1 GLK1(1) GARP 2 1 1 0 0 At5g27620.1 GLK1(2) GARP 3 2 1 0 0 At5g27620.1 GT1 Trihelix 7 3 4 0 0 At5g27620.1 HAHB4 HD-ZIP 1 1 0 0 0 At5g27620.1 HOX2a_HOX2a - other 4 0 4 At5g27620.1 HSFB2a(1) HSF 4 1 1 1 1 At5g27620.1 HSFB2a(2) HSF 1 1 0 0 0 At5g27620.1 HSFC1(2) HSF 2 1 1 0 0 At5g27620.1 HVH21 HD-KNOTTED 2 2 0 0 0 At5g27620.1 ICU4 HD-ZIP 2 1 1 0 0 At5g27620.1 ID1 C2H2(Zn) 1 1 0 0 0 At5g27620.1 KAN4(2) GARP 2 0 1 0 1 At5g27620.1 LBD16 LOB/AS2 1 1 0 0 0 At5g27620.1 MYB46(1) MYB 5 3 2 0 0 At5g27620.1 MYB46(2) MYB 1 0 1 0 0 At5g27620.1 MYB46(3) MYB 4 2 2 0 0 At5g27620.1 MYB52(1) MYB 4 2 2 0 0 At5g27620.1 MYB59 MYB 2 0 2 0 0 At5g27620.1 MYB83 MYB 5 3 2 0 0 At5g27620.1 MYC3 bHLH 2 1 1 0 0 At5g27620.1 NtERF2 AP2/EREBP 1 1 0 0 0 At5g27620.1 P MYB 4 1 3 0 0 At5g27620.1 RAP2.2 AP2/EREBP 1 1 0 0 0 At5g27620.1 RVE1(1) MYB 1 0 1 0 0 At5g27620.1 smallRNA(i) small RNAs 2 0 2 0 0 At5g27620.1 smallRNA(s) small RNAs 2 1 1 0 0 At5g27620.1 smallRNA(se3) small RNAs 2 0 2 0 0 At5g27620.1 smallRNA(si3) small RNAs 1 0 1 0 0 At5g27620.1 SPL7 SBP 2 1 0 0 1 At5g27620.1 TBF1 HSF 1 0 0 0 1 At5g27620.1 TEIL AP2/EREBP 4 3 1 0 0 At5g27620.1 TOE1(3) AP2/EREBP 1 0 1 0 0 At5g27620.1 TOE2(3) AP2/EREBP 6 4 2 0 0 At5g27620.1 TSS - other 1 0 1 At5g27620.1 WOX13(1) HD-HOX 3 1 2 0 0 At5g27620.1 WRKY12 WRKY(Zn) 1 1 0 0 0 At5g27620.1 WRKY18(1) WRKY(Zn) 1 0 1 0 0 At5g27620.1 YAB1 C2C2(Zn)YABBY 9 4 5 0 0 At5g27620.1 ZAT6 C2H2(Zn) 1 1 0 0 0 At5g27620.1 ZmHOX2a(1) HD-HOX 3 1 0 1 1 At5g27620.1 ZmHOX2a(2) HD-HOX 2 0 0 1 1