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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
--------->
CCA1(2)
<------
ZmHOX2a(2)
<----------
DOF2
------>
NtERF2
--------->
AGP1
--------->
At4g35610
<---------
ARR11(3)
-----
------>
NtERF2
--------->
ARR14(2)
--------->
ANAC58
<---------
At4g35610
----------->
ARR10
--------->
ANAC58
<----------
DOF2
---------->
DOF2
<---------
AGP1
<---------
ZAT14
--------
GT1
<---------
DAG2
<---------
At4g35610
<---------
ARR14(2)
--------->
ZAT18
>
AHL20(2)
--------->
ZAT14
<-----------
GT1
--------->
RAP2.6(2)
--------->
ARR11(3)
<---------
ZAT18
aacaaatcac
cagagaagtctcgacttattcactctttctctctgccgctaaagctttccgataagat
ctgaagaatgtaatcgagagcacaagacaata
25818100
>>>>>>>>>
E2Fd
----
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---
----------->
RAV1(1)
-----
--------->
ANAC46
------>
NtERF2
<----
<---------
ALFIN1
--------->
LBD16
-----
--------->
AtMYB61
<<<<<<<<<<
E2Fa
------->
GAMYB
-----
<---------
MYB55(2)
--------->
ANAC46
--------->
ANAC46
---------
--------->
MYB46(3)
<---------
LBD16
--------->
O2
-------->
P
--------->
YAB1
--------->
DEAR3(1)
>>>>>>>>>
E2Fc
<---------
O2
--------->
ARR11(3)
<---------
ATHB12
--------->
LBD16
--------->
ANAC58
--------->
KAN4(2)
<---------
ARR11(3)
--------->
WOX13(1)
--------->
ZAT14
--------->
ANAC58
------->
TEIL
----------->
RAV1(1)
<----
---->
YAB1
<-------
TEIL
--------->
ANAC46
<xxxxxxxxxxxxxxxx
smallRNA(i)
<-----------
GT1
--------->
GLK1(2)
gtaagtttcagattcaatcaaaaacaaaccaccgcagaaacattttcccgccaaaactggcgatgaatattcacgagacaacagcaaaatctaccaaaga
25818200
--------->
ARR11(3)
<---------
TOE2(3)
--------->
YAB1
<---------
TOE1(2)
<---------
ICU4
--
----->
CCA1(2)
--------->
YAB1
<--
---
ZmHOX2a(2)
<---------
YAB1
<---------
HSFB2a(1)
---->
AGP1
<---------
At5g28300
<---------
HSFC1(2)
-----
ARR14(2)
--------->
YAB1
<---------
ARR14(2)
---->
ARR14(2)
<---------
ICU4
--------->
ARR14(2)
---->
ARR11(3)
--------->
ICU4
--------->
ATHB12
>>>>>>>>>
TBF1
===
->
DOF2
<-----------
GT1
--------->
At4g35610
---------->
DOF2
>>>>>>>>>
TBF1
--------->
HSFB2a(1)
-----
ARR11(3)
--------->
YAB1
--------->
YAB1
<----------
ID1
--------->
HSFC1(2)
tccaaggttgaaatttaccgataatcatcatcagaacttgaagaaatcaaaagcgagaacgattgaagtagaaaacgaagaagaagaaccgaaatttccg
25818300
--------->
GLK1(2)
<---------
ARR14(2)
<---------
MYB46(3)
<---------
REM1(1)
<-------
GAMYB
--------->
STY1(1)
----------->
GT1
<---------
STY1(1)
----------->
GT1
<---
--------->
TOE1(2)
<---------
HSFB2a(2)
----
--------->
TOE2(2)
<---------
LBD16
--------->
ANAC58
-----
------->
YAB1
--------->
ARR14(2)
--------->
ANAC58
<----
----
ZmHOX2a(2)
<------
ZmHOX2a(1)
---------->
DOF2
-------
=========================
HOX2a_HOX2a
<-------
TEIL
--------->
TOE2(3)
<-------
atcaaaacctagggttgtagaggaatcgggaacgggaaaaaaacacagattcaatcgcgatagagctaaacctaaagctcgaaatcggaacttaaatcat
25818400
<---------
HSFB2a(2)
<---------
ANAC58
---------
--------->
TOE2(3)
--------->
HSFB2a(2)
<---------
ANAC58
--------->
ANAC46
<---------
MYB59
------>
ZmHOX2a(2)
--------->
ZAT2
--------->
ANAC58
------
ICU4
============================
HOX2a_HOX2a
<---------
HSFC1(2)
--------->
ANAC58
----->
YAB1
<---------
YAB1
--------->
HSFC1(2)
<---------
REM1(2)
---->
ICU4
--------->
YAB1
<---------
ZAT2
--------->
ARR11(3)
-----
YAB1
--------->
GLK1(2)
--------->
HSFB2a(1)
<---------
ALFIN1
-->
YAB1
<---------
GLK1(2)
------>
ZmHOX2a(1)
------->
TEIL
<-----------
ARR10
--
ATHB12
---------->
DOF2
--------->
GLK1(2)
--------->
ANAC46
<---------
ARR11(3)
aatcacatac
ctaaaagaatcgtgatcgagaagctaattcgtcttcctctggttcgatagcatcacgaagcttgctcagaaaaatctccacggccaaaga
25818500
<
--
-----
--------->
DEAR3(1)
<-----
<---------
At5g28300
<------
--------->
ICU4
--------->
CCA1(2)
--------->
MYB46(3)
------->
GAMYB
<-
--------->
AHL20(2)
--------->
ICU4
<---------
DEAR3(1)
--------->
MYB52(1)
<---------
AHL20(2)
--------->
ANAC58
------->
GAMYB
----------->
GT1
-------
----------->
GT1
<----------
ID1
<-----------
GT1
------->
GAMYB
<---------
ANAC46
<----------
ID1
*
TSS
--------->
ANAC58
--------->
ANAC46
--------->
MYB52(1)
<------
NtERF2
->
DOF2
----------->
GT1
---------->
DOF2
<---------
MYB46(3)
----------->
HVH21
<---------
LBD16
gagagagaagagggaaaaaattagtttc
aaagagacgaa
atgtttgttaaccgcctcggtgtatatatagggctaacggaaaatataacggcggaaagat
25818600
<---------
MYB46(3)
<---------
ANAC58
<-------
GAMYB
<---------
ANAC58
<------
MYB46(1)
<---------
MYB52(1)
<------
MYB83
-------
GAMYB
<---------
MYB46(3)
<---------
WRKY12
------->
ANAC55(2)
<---------
AtMYB61
---------->
DOF2
---->
GLK1(2)
<---------
bZIP60(2)
------>
MYB46(1)
----
GLK1(2)
<---------
ANAC58
--------->
WRKY38(1)
<---------
WRKY38(1)
---
HSFB2a(1)
<---------
ANAC58
----------->
HVH21
------>
MYB83
--------->
WRKY18(1)
--
--------
ANAC55(2)
--------->
MYB59
<----------
DOF2
--------->
WRKY12
<-----------
HVH21
----
-->
HSFB2a(1)
<---------
ANAC46
------->
TEIL
<----------
DOF2
<-----------
GT1
--------->
AHL20(2)
tccgttatccatttgatgacttggtttggttgtttctgtatgttgactttgacgctgtttctttgaccttccattaa
accggtcaaggcgaattaaacca
25818700
<---------
YAB1
--------->
GLK1(1)
--------->
ARR14(2)
<---------
ANAC46
--------->
LBD16
<---------------
AtSPL8
<---------
ANAC58
<---------
LBD16
--------------->
AtSPL8
<---------
ANAC58
-------
<-----------
GT1
<---------
MYB52(1)
<-----------
GT1
<-------
TEIL
--------->
GT1
<---------
GLK1(1)
<---------
At4g35610
--------->
TOE1(2)
----------->
RAV1(1)
------>
DOF2
<---------
ARR14(2)
--------->
At4g35610
--------->
TOE2(2)
<---------------
AtSPL8
aaagttatttaaccggaaatgctgattcgacccagtaagctctgttttttttt
ggtacaaaacataagaacacattttacttgtacattgcaacattcat
25818800
---------->
DOF2
<<<<<<<<<<
WRKY18
--------->
YAB1
--------->
ANAC58
--------->
ANAC58
--------->
ICU4
--------->
ANAC46
--------->
ANAC58
-----
<---------
ATHB12
<-------
TEIL
<---------
WRKY38(1)
--------->
GLK1(1)
<
-->
YAB1
--------->
AHL20(2)
--------->
ANAC58
--------->
WRKY18(1)
--------->
AtLEC2
----------
aacaatgatcaaataaacaaagacttgggttcaagccatcgactagatggtcaagtcaagaccagagaccatacaaaaacagagacccatgaaatgtaca
25818900
<---------
REM1(2)
<-
----->
DOF2
<----------
DOF2
<------------
------
ZmHOX2a(1)
---------->
DOF2
------->
TEIL
-------------
->
GT1
---------->
DOF2
>>>>>>>>>
MYB2
<---------
ANAC55(2)
<-----------
GT1
aaggacccaagagtgaaagagaaacaaaaagaaaaccaaaaaactatacatattacatgaagctttacacagactctagccttgttgttaccacatagag
25819000
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AGI:
At5g64540.1
Description:
unknown protein
Range:
from: 25815923
to: 25818528
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g64541.1
Description:
unknown protein
Range:
from: 25818540
to: 25818677
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At5g64550.1
Description:
loricrin-related. similar to loricrin-related [Arabidopsis thaliana] (TAIR:AT5G09670.2); similar to loricrin-related [Arabidopsis thaliana] (TAIR:AT5G09670.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82910.1)
Range:
from: 25818754
to: 25822206
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g64552.1
Description:
CPuORF22 (Conserved peptide upstream open reading frame 22)
Range:
from: 25818754
to: 25822206
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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