Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------YAB1                                                                 ----------->GT1                                                              --------->ATHB12                                                              <---------ICU4                                                              --------->ATHB51                                                              -------->ATHB1                                                             <---------ATHB51                                                             --------->AHL20(2)                                                             <---------AHL20(2)                                                          --------->AHL20(2)                                                          <---------AHL20(2)                <---------ANAC58                      <---------AHL20(2)              <-----------GT1                      <---------AHL20(1)           <---------ICU4                          --------->AHL20(2) --------->YAB1 <---------ANAC58                   --------->AHL20(1)     <----------ID1 --------->TOE2(3)    ------>ZmHOX2a(1)           <---------AHL20(2)    <-----------GT1        <----- ------->ANAC58 --------->ANAC55(2)              --------->ICU4  --------->YAB1                ------ ------->ANAC58 <---------ANAC55(2)          --------->At5g28300<---------YAB1                ------- ->DOF2 ----------->GT1                     ----------->GT1  --------->ICU4       ---------->DOF2   caagcttaattagttattacgttcctagcctatcgattgtttatatcggtaaatattttataaattattgtaattaacaacaaaaaaagcatacaatttt  13293600                                                                             --------------->AGL15                                                                             <----------DOF2                                                                             <---------------AGL15                  <---------ANAC58                                          <-----------------AGL3          <---------AHL20(1)                                                <-----------------AGL2          --------->AHL20(1)                                             <-------MYC3          <---------AHL20(2)    --------->MYB46(3)                       <-------MYC2     <---------YAB1           ----------->RAV1(1)                        ------->MYC3          <----- ----AHL20(2)     <---------ANAC46                                       ------->MYC2<------ZmHOX2a(1) --->AHL20(2)     <---------ANAC58                 <---------ANAC58   XXXXXXXXXXXXXXXXXXXX>MIR867 -->YAB1 --------->AHL20(2)  <----------ID1        <---------ANAC58 <-----------GT1<xxxxxxxxxxxxxxxxx   aatggttttgattatattttgcttatattatgcaacaaataagaagaagtgaagcttgggtttattcattttacacatgctttattaggacagagtgtgt  13293700                                                                                                 <---                                                                                                 xxxx                                                                                                -----                                                                                                <----                                                                                                <----                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)---                                                                    --------------->AtSPL8      -----                                                                    <---------------AtSPL8      <----                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                  --------->ATHB51              -----                                         <----------DOF2          <------------ATHB5           <-----                                    <-----------GT1               <--------ATHB1        xxxxxxxxxxxxx                                 --------------->AtSPL8           -------->ATHB1       <xxxxxxxxxxxxx                                 <---------------AtSPL8           --------->ATHB12    ------>NtERF2                               --------->YAB1                     <---------ICU4     --------->DEAR3(1)                               <---------ICU4                     --------->YAB1     <xxxxxxxxxxxxxxx                               -------->ATHB1                    <---------ATHB51  --------->At4g35610                               --------->ATHB12                  <---------ATHB12  <xxxxxxxxxxxxxxxxsmallRNA(i)                               --------->ATHB51                  --------->ICU4    xxxxxxxxxxxxxxxxxx                               <--------ATHB1                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              <---------ATHB51                   <---------YAB1  <xxxxxxxxxxxxxxxxsmallRNA(i)                              <---------YAB1                  ------------>ATHB5<xxxxxxxxxxxxxxxxsmallRNA(i)                              --------->ICU4               --------->WOX13(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <---------ATHB12            <---------ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <---------AHL20(2)            <---------YAB1 ------->TEIL--------->DEAR3(2) ----ZAT14 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->ICU4<-----------GT1<---------ATERF1(1) xxxxxsmallRNA(fl3)        ------------>ATHB5           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------   agttgaacataaatgagtttgtctagtattcaattattgtactcttttttttttgggtcatcattcaattattgtacctgatagtagccgactgcttaga  13293800            <---------AHL20(2)       --------->ICU4       <---------YAB1                                             <---------ANAC46   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                           <---------ANAC58 ---ZmHOX2a(2)                                                    <---------ANAC58 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                <---------ANAC55(1)              <x ---->ARR11(3)                                               --------->ATHB12                <------- -----ARR11(3)                                               <---------ICU4                  <------MYB46(1) -----ARR14(2)                                           xxxxxxxxxxxxxxxx>smallRNA(i)        <------MYB83 --->ZmHOX2a(2)       <---------ANAC58            ------------>CBF--------->ANAC55(2)   <---------MYB46(3) ---->ARR14(2) <---------AHL20(2)               <---------At4g35610                     <-----------RAV1(1) -----AGP1  --------->AHL20(1)              xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx ---->AGP1  --------->AHL20(2)          <---------AHL20(2) <-----------TGA1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----CCA1(2)<---------AHL20(1) <---------ICU4   --------->At4g35610     <---------CCA1(2)   <-------- xxx>smallRNA(i)  <---------YAB1        --------->AHL20(2) <-----------HVH21 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxsmallRNA(si3)    --------->WOX13(1)  --------->ZAT2    <---------ANAC55(2)<----------DOF2< xsmallRNA(i)  <---------YAB1  --------->YAB1   <---------ZAT2<------------CBFxxxxxxxxxxxxxxxxxxxxxxx xxxxx>smallRNA(si3)  <---------ANAC58  <---------YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------- ---->ARR10--------->AHL20(2) <---------ATHB12 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ------>ZmHOX2a(1)   tcttgagtcttgattatattattgtcgtatcaatcaatacatataattgcagctcaatattcgtcattgcgtgtctatctcatcgtccttttgttgggtc  13293900                               <---------AHL20(2)                              <---------YAB1                            <---------ICU4     <---------ANAC58       -------->ATHB1     <---------ANAC58      --------->ICU4   <---------YAB1          --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --ANAC46                  <---------AHL20(2)                              <-----------RAV1(1) x>smallRNA(i2)            <---------ATHB51       ------->TEIL            <---------TOE2(3) -MYB46(3)        <---------------AtSPL8          *TSS        ----------->GT1   <---------YAB1 ---------YAB1    --------------->AtSPL8          <---------ARR14(2)   <---------AHL20(2) >smallRNA(i2)    --------------->AtSPL3          --------->ARR14(2)   --------->AHL20(2)         xxx >MYB59          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    xxx   ttattatgcttgttttcatttaagtacaaattattaatggttttgaagtatgtatatgccttcgtagtaaaattttaatgttgtgattttggatgtgaga  13294000                                                                     --------->ANAC46                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             <---------AHL20(2)                                                             --------->AHL20(1)                                                             <---------AHL20(1)                                                             --------->AHL20(2)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <---------------AtSPL8           --------->AHL20(1)                        --------------->AtSPL8           --------->AHL20(2)                       xxx                        <---------------AtSPL3           <---------AHL20(2)                       xxx                    --------->AHL20(2)               --------->AHL20(2)                    ------>ZmHOX2a(1)                  ----------->GT1                    <---------AHL20(2)                  xxxxxxxxxxxx              --------->ANAC55(2)                    <---------YAB1--------->ZAT6       <xxxxxxxxxxxx              --------->ANAC58                      <---------AHL20(2)       xxxxxxxxxxxxxxxx>smallRNA(i)              --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i)  <xxx              <---------ANAC55(2)         ---------->DOF2<---------AHL20(1) --------->ARR14(2)  -----          <-----------HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-----------GT1 <xxxxxxxxxxxxxxxxxxx       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)---------->ID1 x xxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------GLK1(2)  ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->YAB1  --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   aaaattgatatatgtcaagtaagttaatagtacttcattcagagtaaagcttattttaattaattaattacactacaggttctccttgtcttcctccttc  13294100                               <---------ZAT14                               --------->ZAT18                            <---------ANAC46                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         xxxxxxxxxxxxxxxx>smallRNA(i)                         xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <---------DEAR3(1)                        <---------At4g35610                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       xxxxxxxxxxxxxxxx>smallRNA(i)                   xxxxxxxxxxxxxxxx>smallRNA(i)              <---------YAB1--------->ALFIN1              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             xxxxxxxxxxxxxxxx>smallRNA(i)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <---------AHL20(2)     <---------ANAC46 xxxxxxxxxxxxxxxx>smallRNA(i)                                  --------->ANAC55(2)     <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(i)                          <---------TOE2(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                --------->GLK1(2)    ------->TEIL xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   --------->ARR11(3)<---------ANAC55(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  --------->CCA1(1)  --------->ANAC58 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->AHL20(2)   --------->ANAC55(1) xxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i) --------->RVE1(1)  --------->ANAC46 xxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->ANAC55(2)      ---- xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->LBD16--------->TOE2(3)  <---------TOE1(2)  xxxxxxx ---->YAB1 xxxxxxxxxxxxxxxx>smallRNA(i) --------->HSFB2a(2)          <---------REM1(2)--------->AHL20(2) xxsmallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ARR11(3)--------->ANAC58  <---------- xxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------HSFB2a(2)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ataagatgggtgtgttttcattctccagcggtgtgcaatgctccagaaaaaaaaaaaatcttaagtggctatacacgtatgtttttaagtaattacattt  13294200                             <----------DOF2                         --------->WRKY12                        <---------WOX13(1)                                            --------->ANAC58                       <---------ANAC58                                         <xxxxxxxxxxxxxxxxxxxx                  --------->ATHB12                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------ANAC55(2)                                               <-----------GT1           --------->ANAC55(2)                                              <---------YAB1          -      --------->ATHB12 <---------ANAC58                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ICU4   <---------MYB46(3)                                 <---------YAB1             -   <---------ICU4--------->AHL20(2)                             <---------ARR11(3)    --------->ANAC58   --------->YAB1<---------AHL20(2)                             <---------AHL20(1)xxxxxxxxxxxxxxxxxxx ----->TOE2(3)  <---------WOX13(1)   ------>ZmHOX2a(1)--------->YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->YAB1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   -------- -GT1<---------YAB1 <---------WOX13(1)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxx   cttaaacatgattaagtgattaattggttgactttaatcctaataagttgaatcactaatattctatatattcttgttattacagcacaagttatacact  13294300                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                    --------->LBD16                                                   --------->ANAC46              xxxxxxxxxxxxxxxx>smallRNA(i)         --------->LBD16             --------->TGA1a                     --------->ANAC58             --------->O2                        --------->ANAC58  <---------LBD16             <---------O2                       ------>NtERF2      --------->HSFB2a(2)      --------->DAG2                           xxxxxxxxxxxxxxxx>smallRNA(i)    <---------TOE1(3)     ==================bZIP_DOF            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ---------->DOF2                      <xxxxxxxxxxxxxxxxsmallRNA(i)         <---------TOE2(3) xsmallRNA(si3)                         <xxxxxxxxxxxxxxxxsmallRNA(i)--------->LBD16 -------->ANAC58                       xxxxxxxxxxxxxxxx>smallRNA(i)<---------HSFB2a(2) -------->ANAC58 <---------CCA1(2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <------ZmHOX2a(2) xxxx>smallRNA(si3)             <---------------------WRI1        <---------ANAC46 ->ZAT6    <---------DOF5.7(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------LBD16     <----------DOF2 xxxxxxxxxx>smallRNA(si3)     <----------ID1  <xxxxxxxxxxxxxxxxsmallRNA(i)    <-----------RAV1(2)   agaagcaaaaagttcacgtctatctatcgaagacgacgaagcgttcttggcacccgagataaatgccttcggggatcagttcaggtttcttttttcttcc  13294400                                                                                <---------ARR11(3)                                                                          <------ZmHOX2a(2)                                                                         --------->ARR14(2)         <                                       ----------->GT1                   <---------ARR14(2)        --                                     ---------->DOF2                     <---------AGP1            <-                                    <---------AHL20(2)                 <---------DEAR3(2)      ------                            <---------YAB1                            <---------TOE1(2)       -------                       <---------CCA1(1)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <---------RVE1(1)                             <------NtERF2<---------ICU4 ----                      --------->AHL20(1)                            <-----------HVH21         <------                      --------->ARR11(3)                           <---------MYB46(3)         -------                      <---------AHL20(1)                           <---------DEAR3(1)  <xxxxxxxxxxxxx              --------->AHL20(2) <---------ARR11(3)            <---------AtMYB61--------->ARR11(3)xxx      >>>>>>>>>EIN3   <---------ARR11(3)    --------->DAG2  <----------DOF2------>ZmHOX2a(2) ------>ZmHOX2a(2)     <-------TEIL ---------->DOF2--------->AHL20(1)      <-----------GT1<---------CCA1(2)XXXXXXXXXXXX   atctatatacattgaattaaaaaagatattttgaatatataaagaaaaattggagtttttttcttttggtcgtcggatctaaaatcttgacttgatccgt  13294500  Previous    Next  AGI:  At4g26255.1    Description:  other RNA Range:  from: 13293950    to: 13296474    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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