Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->TOE2(3)                               --------->At4g35610  <---------CCA1(2)        <---------ARR14(2)                                      --------->YAB1     ------->TEIL        --------->ARR14(2)              ---------->DOF2        <---------YAB1 --------->At4g35610       <---------CCA1(2)    ------>ZmHOX2a(1)        ------->TEIL <---------YAB1  <---------CCA1(2)     ----------->GT1       --------->TOE2(3)        <---------CCA1(2)         ----------->RAV1(2)  <-   gtgagactcgtatattgtaatcttatattcctcaatagtttataaagaaactttgaatcttgtttatcatcagagaaaacatctgaatcttatctccagt  5292200                                                                                         ------>MYB46(1)                                                                <----------DOF2          ------>MYB83                                                               <---------DAG2            --------->MYB52(1)                                                         --------->YAB1                 --------->MYB55(1)                                                         <---------ICU4                <---------MYB111(1)                                                   --------->TOE1(3)                   <---------MYB46(2)                                    <---------AHL20(2)   --------->ATHB51              <---------MYB52(2)        <---------ANAC46            --------->AHL20(2)   -------->HAHB4                <---------MYB59        <---------ANAC58          <---------AHL20(2)  --------->YAB1                  --------->ANAC55(2)        <---------ANAC58 <----------DOF2           --------->TOE2(3)                  --------->ANAC46 --------ANAC46      <---------CCA1(2)            ----------->GT1          <-----------GT1   tttgtgtttttcttgtaatgcctctatcttttctatatttttttagttcagaacgttaataatcgcctttaccattttttccctacatacctaacgatta  5292300                                                             ------>ZmHOX2a(1)                                                            --------->TOE1(3)               --------->ZAT14    ----------->GT1           --------->TOE2(3)  <---------ANAC46               --------->ZAT18 --------->YAB1           --------->GLK1(1)      <---------ANAC58               <---------ZAT14<---------YAB1            <---------GLK1(1)      <---------ANAC58          ---------->DOF2 --------->AHL20(2)          --------->ATHB12        <---------ZAT2     ------->GAMYB        <---------AHL20(2)       <---------ANAC58           --------->ZAT2  <-----------GT1----------->GT1  --------->YAB1   <---------ANAC58        <---------At4g35610   ----  --------->MYB52(1)     --------->AHL20(2)        <---------ANAC46       --------->ANAC46       ----   agagtaactgtctaaagtgtagtaaaattaaaatgatagtaatacatggtttggcttgatttccttaaaaacttctaagcagcttgtgttttaaaacaca  5292400                                               <------NtERF2                                              ------>NtERF2                                        <-                                              <---------RAP2.6(3)                                  <-                                             --------->RAP2.3(3)                                  <--                                             --------->RAP2.6(2)                                <----                                             <---------ATERF1(2)                                <----                     --------->ANAC55(2)    --------->RAP2.3(1)                          --------->At4g35610                     <---------ANAC58 --------->MYB46(3)                             <---------ARR14(2)                     <---------ANAC46--------->ANAC58                                --------->ARR14(2)                 <---------DAG2      --------->ANAC58     <---------ANAC58          <---------CCA1(2)      ----------->GT1<---------ANAC55(2)------>MYB83--------->ZAT14                 --------->GLK1(1)   ---------->DOF2   <---------ANAC55(1)------>MYB46(1)   <---------ANAC46         --------->ARR14(2) ----------->HVH21   <---------ANAC58<------NtERF2  <---------ZAT14                <---------ARR14(2) ----->ANAC58    <----------DOF2    ----------->RAV1(1)   <---------ANAC58      ------>ZmHOX2a(2) <-- ----->ANAC58 <-----------GT1 ---------->DOF2--------->ATERF1(2)           <------ZmHOX2a(2)<--------   cccatgaaaggtttcttaactttacgtgaactcaaaggcaccaaatgccgccagtgcgatgcttgtgaattgtgacgatcgatcgtatatccactgccct  5292500     <----------DOF2    --------->CCA1(2)  ------>NtERF2        --------->ARR14(2) --------ANAC58        <---------ARR14(2)                                                   <-------- --------ANAC58     <---------HSFB2a(2)                                                   <---------- -------AtMYB61     --------->HSFB2a(2)                     <---------RAP2.6(2)       ----------->GT1 -----MYB52(1)     <---------LBD16                        --------->CCA1(2)           <------MYB46(1) ------DOF2<---------ATHB12                          ----------->GT1                  <------MYB83 ---------RAV1(1) <---------LBD16 <---------WOX13(1)--------->DAG2                 <------------CBF -ZAT18--------->AHL20(2) ----------->HVH21        ---------->DOF2 <----------DOF2--------->ATHB12   ttggtgcctttaaatcaattttcgggatatgacccgattgatagaaatatacagaaagtgatacggcttctttcattctctacaagattggtatttatac  5292600                                                                                     <------------CBF                                                                                   <---------ZAT18                                                                             --------->TOE2(3)                                                                             <-------GAMYB                                                                          <---------ARR11(3)                                                                     <-----------HVH21    ---------->DOF2                                                                  <------------CBF --------->ZAT14                                                              --------->ANAC58     --------->ZAT18                                             <---------ETT(1) --------->ANAC46     <---------ZAT14                                    <---------MYB52(1)        --------->ANAC58  --------->MYB52(2)    <-------GAMYB      <---------YAB1    <----------DOF2    --------->MYB52(1)<---------MYB52(1)   --------->ALFIN1 >>>>>>>>>MYB98  --------->At5g28300    <---------SPL7 --------->ARR11(3)   <---------MYB46(3)--------->YAB1--------->LBD16        ----------->HVH21 ------>ZmHOX2a(2)      -- <---------ANAC46  <-----------GT1--------->HSFB2a(2)   --------->At4g35610<------ZmHOX2a(2)    ----- -AHL20(2)  <---------DAG2        <---------HSFB2a(2)--------->RAP2.6(3)  --------->ARR14(2) <------- -TBP       <----------DOF2      <---------LBD16    --------->MYB52(1)    <---------ARR14(2) <-------   atcgggtgttggaactttttttaacataatagttttccggtaactttccgacaaaaacggctgaacggaattgtcagatcgttagtgcattggaaagctg  5292700                                                              ------------>CBF                                                            ----------->HVH21                                                           <---------MYB111(1)                                                          --------->ZAT2                                                          --------->At4g35610                                                          --------->O2                                                        <---------ALFIN1                                                        ------->GAMYB                                                --------->ZAT14                                                <---------ZAT14                                                --------->ZAT18                                                <---------ZAT18                                             <------------CBF <<<<<<<GRF7    --------->ZAT18                     <----------DOF2<---------MYB55(2)                     <------  <---------------AtSPL8              <---------ZAT2   <---------MYB111(2)                    ------- -------->DOF2                        --------->ZAT2   --------->MYB46(3)                   -------->P ------>GT1                           --------->At4g35610 ----------->RAV1(2)         ---------->DOF2 --At4g35610       --------->ZAT14    <---------At4g35610--------->MYB52(1)         ----------->HVH21 --ZAT2            --------->ARR14(2)------>NtERF2    -------->P       <---------MYB52(1)  <---------   gtaaagagtactacaagatggtatactcatacggtttgccagctttccattgcactaaccacctgacaattcggtttggccttggtctgaaagttaccag  5292800                                                    <---------ICU4                                                    --------->AHL20(2)                                              --------->YAB1                                          --------->YAB1                                        --------->GLK1(2)       --------->ARR14(2)     --------->YAB1                    --------->YAB1         --------->HSFB2a(1) ---HSFB2a(2)                 <------ZmHOX2a(1)     --------->YAB1 -->HSFB2a(2)         ----------->RAV1(1) --------->ATHB12    <---------HSFB2a(1)         <---------GLK1(2) --GT1        --------->AHL20(2)--------->GLK1(1)--------->YAB1 <---------ARR14(2)  <---------YAB1   aaaactattatgtcaaaaaaattccaacatcaggaactcaagaatcatggataataatatccaaaggttcccctaaacatgggcttactatagattgtga  5292900                                                                                                <xxxx                                                                                                -----                                                                                             <xxxxxxx                                                                                          <------MYB46(1)                                                                                          <------MYB83                                                                                          -----------                                                                                         <---------MYB46(3)                               <---------ZAT6                                           <---------MYB55(1)                             <---------ZAT14                     ----------->GT1      <---------MYB46(3)                           --------->ZAT18                    --------->ANAC58       --------->ALFIN1                           --------->ZAT14           <---------MYB52(1)              <---------AtMYB61                           <---------ZAT14           --------->DOF5.7(2)           xxxxxxxxxxxxxxxxxx                          <---------ANAC58          --------->TOE2(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->MYB52(1)--------->ZAT14   --------->TOE1(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------AHL20(2) <---------ZAT18  <---------ANAC55(2) --------->ARR11(3)--------->MYB55(2)       <---------ZAT6     <---------ANAC58         ----------->GT1    <---------CCA1(2) <---------ANAC46 --------->ANAC58         <---------ANAC46     --------->YAB1 --------->ANAC58     <---------ANAC46 --------->ANAC58       <---------ANAC46  <---------ATHB12    --------->ANAC46 --------->ARR11(3)   <   ggcaagttagtgatgaattaatggagttgtgtactgtgaacacaatgaataatacgttaattctacgcagttatatctagagatgttgtggtgggtaaaa  5293000                                  ----------->RAV1(1)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <---------MYB55(2)                                --------->DEAR3(1)                                --------->MYB46(3)                             --------->ANAC58                             --------->ANAC46                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         <-----------GT1                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 xxxxxxxxxxxxxxxx>smallRNA(i)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               ------->TEIL<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  --------->ANAC58            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxx          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  <---------ANAC58          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->ANAC58          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <----------DOF2                  <---------ANAC58    ------>MYB83<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    ------>MYB46(1)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                xxxxxxxxxxxxxxxxxxx>smallRNA(i2)    -------->P<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ALFIN1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->At4g35610 <---------ANAC46  xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)         <---------At4g35610 <---------ANAC55(2) ----->DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->LBD16 xxxxxxxxxxxxxxxxsmallRNA(le3)------>NtERF2     --------->TOE2(3)      <---------YAB1 <xxxxxxxxxxxxxx >GT1     ----------->RAV1(2)--------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ---------->DOF2 xxxx>smallRNA(s2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxsmallRNA(i)  ----------- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->AtMYB61      <-----------RAV1(2)  <-------TEIL   aagcccaacccgacctgaacccaaaataaacccgcccaccaaaaactcaactttagaaaactcagatgggtttttgattaagtgcgtaaagcccgaaaaa  5293100  Previous    Next  AGI:  At4g08350.1    Description:  KOW domain-containing transcription factor family protein. Identical to Putative transcription elongation factor SPT5 homolog 1 [Arabidopsis Thaliana] (GB:Q9STN3); similar to transcription initiation factor [Arabidopsis thaliana] (TAIR:AT2G34210.1); similar to RNA polymerase II transcription elongation factor SPT5 [Physcomitrella patens subsp. patens] (GB:EDQ63231.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60892.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68098.1); contains InterPro domain Transcription antitermination protein, NusG, archaea; (InterPro:IPR003257); contains InterPro domain Translation protei Range:  from: 5286226    to: 5292236    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g08351.1    Description:  unknown protein Range:  from: 5292391    to: 5292576    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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