Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              >>>>>>>>>E2Fd                            >>>>>>>>>E2Fc                           ------>NtERF2                       <---------GLK1(1)                           --------->LBD16                    <---------ARR11(3)                          --------->ANAC58                    --------->ARR11(3)                          --------->ANAC58                ---------->DOF2                       xxxxxxxxxxxxxxxx>smallRNA(i)   >>>>>>>>>E2Fc                      <xxxxxxxxxxxxxxxxsmallRNA(i)    >>>>>>>>>E2Fd                 --------->ANAC58          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->LBD16                --------->ANAC46        --------->ANAC46  <<<<<<<<<<E2Fa             ------>NtERF2       <---------LBD16        --------->ANAC58  --------->ANAC46          <<<<<<<<<<E2Fa     <---------ARR14(2)        --------->ANAC58 <---------LBD16        <xxxxxxxxxxxxxxxxsmallRNA(i) --------->WRKY18(1) ----->NtERF2        <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->ANAC58   --------->ARR14(2)          <- -------->LBD16  <---------TOE2(3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<-----------HVH21<------- ------->ANAC58 <-----------GT1   --------->ANAC58  --------->ANAC46  <---------GLK1(1)     <-------- ------->ANAC58 xxxxxxxxxxxxxxxx>smallRNA(s)   <xxxxxxxxxxxxxxxxsmallRNA(i)--------->LBD16 <--------- ------->ANAC46<-----------GT1    --------->ANAC58  --------->ANAC58  --------->GLK1(1)   --------->AHL20(2) -------LBD16 --------->AHL20(2)  --------->ANAC46 <---------LBD16<-----------GT1   --------->ANAC58   cccgccaaaaacgcaatttaacattttcccgccaaaacgacattcaacattttcccgccaaaaagatttcacatttccggtcaaaaacgcaatttaacat  13801300                                                                                               <xxxxx                                                                                             <xxxxxxx                                                                                      >>>>>>>>>E2Fc                                                                                      >>>>>>>>>E2Fd                                                                                     ------>NtERF2                                                                                     --------->LBD16                                                                           <---------TOE2(3) --------                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)             xxxxxxxxxxxxxxxx>smallRNA(s)                                 <-----------GT1    --------     --------->DEAR3(1)                                                  <-----------GT1     --------   <---------At4g35610                                                  --------->AHL20(2)<xxxxxxxxxx   --------->At4g35610                --------->ANAC58     --------------->AGL15    --------->ANAC58   ------>NtERF2              --------->LBD16              <---------------AGL15    --------->ANAC58   --------->LBD16            ------>NtERF2    <---------TOE2(3)  --------->ANAC58  <<<<<<<<<<E2Fa <---------LBD16             --------->ANAC46 <-----------GT1     --------->ANAC58  --------->ANAC46 ----------GT1              <---------LBD16  <-----------GT1     --------->DAG2<xxxxxxxxxxxxxxxxsmallRNA(i) --TOE2(3)   <---------ARR11(3)       --------->ANAC46    ----------------->AGL3   <---------LBD16 ---GT1      --------->ARR11(3)       --------->ANAC58    ----------------->AGL2<xxxxxxxxxxxxxxxxsmallRNA(i) --GT1      --------->YAB1<-----------GT1   --------->AHL20(2)  ---------->DOF2xxxxxxxxxxxxxxxxxxxxxx   ttttccgccgaaaatgatattcaacatttttccgccaaaaacgcaatttaacattttttcgccaaaaaaagcaatttaacattttcccgccaaaaacgca  13801400                                                        --------->AHL20(1)                                                        --------->AHL20(2)                                                        <---------AHL20(1)                                                        <---------AHL20(2)                                                        --------->ARR11(3)                                                        <---------ARR11(3)                                                       --------->AHL20(2)                                                   --------->AHL20(2)                                                  <---------AHL20(2)                                             <---------YAB1    --------->TOE2(3)                        --------->AHL20(2)    <---------DAG2                           <---------AHL20(2) <-----------GT1         --------->ANAC55(2)--------->AHL20(1)   --------->ANAC46           --------- xxxxxxxxxxxxxxxxsmallRNA(si3)              --------->AHL20(2)   --------->ANAC58          <---------YAB1 xxxxxxxxxxxxxxxxsmallRNA(fl3)              <---------AHL20(1)   --------->ANAC58          <---------AHL20(2) ->ANAC58           --------->AHL20(1)     --------->YAB1    --------->YAB1               --------->AHL20(2) ->ANAC46           <---------AHL20(1) <---------AHL20(2)    <---------AHL20(2)         ------------- ->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------AHL20(2)                   <-------TEIL xxxxxxxxxxxxxsmallRNA(le3)      ----------->GT1 --------->AHL20(2)           --------->CCA1(2) x>smallRNA(fl3)   --------->AHL20(2)  --------->AHL20(2)<---------AHL20(2)  <---------ARR11(3)    xx   attcaacctttttcccatcaaatatatatgtaatacagaaaataaatataatttaaaatatatttataagcaaaatatagatataacatacatataatag  13801500                                                       --------->ANAC58                                                       --------->ANAC58                                                      --------->LBD16                                                    --------->MYB46(3)                                                    --------->TOE1(2)                             <xx                                                   --------->DEAR3(2)                             <xx                                                  --------->PCF2                                  <xx                                               <---------ANAC58           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->WOX13(1)        xxxx                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->MYB46(3)        <xxxx                               --------->YAB1  <------MYB83 xxxxxxxxxxxxxxxx>smallRNA(i)        -----                               ----------->GT1 <------MYB46(1)       <---------KAN4(2)          -----                              ----------->GT1  <---------ANAC58    xxxxxxxxxxxxxxxx>smallRNA(i)------   <-----------GT1        --------->AHL20(2)  <---------MYB46(3) <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxx >YAB1----------->GT1     <---------AHL20(2)  --------->MYB59   <---------LBD16               ------- -->AGL15    --------->YAB1   <---------YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <xxxxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->YAB1 <----------DOF2   tatattaacagttaaacataaactctaaaaaaatgataaaaactaagttgggtacccacgaatagtctcggaacaatcaggtttttttgggctttaccca  13801600                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                               ----------->GT1                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             <---------ANAC58                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             <---------ANAC58                                             <---------ANAC46                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           xxxxxxxxxxxxxxxx>smallRNA(i)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          <---------TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                         ---------->DOF2  <---------DEAR3(1)                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             <---------ALFIN1              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <--------       xxxxxxxxxxxxxxxx>smallRNA(i)       --------->MYB55(2)                         --------->MYB46(3) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------MYB46(3)                        ------>MYB83  === xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ------>MYB46(1) xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------AtMYB61                        <-----------GT1    --- xxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<----------DOF2<xxxxxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <-----------RAV1(1)           <----------CDC5--------->MYB55(1) ->MYB83  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->ANAC46 ->MYB46(1)  ----------->RAV1(2)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------DAG2--------->ANAC46 --->ANAC46  --------->At4g35610<------MYB46(1)<------NtERF2 <-------TEIL =========================== xxxxxxxxxxxxxxx>smallRNA(se3) --------->MYB59xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->MYB46(3)- -->MYB46(3) <---------At4g35610<------MYB83<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---------MYB55(2)< xxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->At4g35610--------->AtMYB61   ctatatcaaaaacccatctgagttttctaaagttaggtttttggtgggcgggtttattttgggttcatgggctgagcttttttacccaccacaacatctc  13801700             <---------TGA1a             --------->ANAC46             --------->O2             <---------O2             --------->TGA1a             --------->bZIP60(2)             =====================bZIP_DOF  --------->LBD16 --------->ANAC46                                                                        <---------ARR14(2) -ARR11(3) <---------ALFIN1                                                              --------->ARR14(2) ======================MYC_MYB                                                   <------ZmHOX2a(2) ----->P  *TSS                                                                  --------->ARR14(2)<-- xxxxxxxxxxxxsmallRNA(si3)                     <-----------HVH21                ------->TEIL -------- ======================bZIP_DOF          <-----------HVH21                      <---------ARR14(2)<-- -------->HSFB2a(2)             <---------HSFB2a(1)  --------->YAB1      <---------------------WRI1 ---------HSFB2a(2)    <----------DOF2  ------>ZmHOX2a(2)             <-------TEIL------>ZmHOX2a(2)   tacccgaagaacaccacgtcgacttctttggagaacgtttgatcgtcacagtcactcatactccctcagtgatacgtcgatggatccacagtatccgctt  13801800                                                                                  --------->KAN4(2)                                                                                 --------->KAN4(1)                                                                                 <---------KAN4(1)                                                                                 --------->GLK1(1)                                                                                <-----------ARR10                                                                                <---------ARR11(3)                                                                                --------->ARR14(2)                                                                                ---------->TaMYB80                                                                              --------->LBD16                                                                    --------->ARR14(2)                                                                    <---------ARR14(2)     <---------RAP2.6(3)                                       --------->ARR14(2)<----------TaMYB80    --------->DEAR3(1)                                         <---------ARR14(2)<---------GLK1(1)    --------->RAP2.6(2)                                      <---------MYB46(3) <---------ARR14(2)  --------->At4g35610                                       --------->ALFIN1<---------LBD16         <  <---------At4g35610                     <---------ANAC46 ------->PIF5  --------->MYB46(3)         < ---------HVH21                           <---------ANAC58 <-------PIF5 ------>ZmHOX2a(1)          <- ->At4g35610       <---------ALFIN1       <---------ANAC58 --------->LBD16<---------ALFIN1      ----- ---------TGA1   <-----------GT1 --------->ETT(1)    <---------ALFIN1<------ZmHOX2a(2)          <----   cgtcagccgtcttcgcttatcacaccctctagttgtcggacttggcgttcaatggacaccccgtggttccgatcctccaccggatattctccaactatgt  13801900                                                                                                <----                                                                                               <-----                                                                                               <-----                                                  <---------TGA1a                              <-----                                                  --------->TGA1a                             <------NtERF2                                                  ===============================================bZIP_DOF                                                ------>NtERF2                                <-------                                                <---------ALFIN1                             <-------                                               --------->ANAC46                             <--------                                               ----------->HVH21          <------ZmHOX2a(2) <--------                                               --------->DEAR3(1)<---------ANAC58           <--------                       <-------GAMYB     <---------ANAC58        <---------ANAC46           <--------                       =====================================MYC_MYB      --------->ARR11(3) ---------                       <---------At4g35610    <---------HSFB2a(2)<---------ANAC58        <-----------RAV1(1)          <-----------HVH21              <---------ANAC58    <---------HSFB2a(1)      <----------DOF2 ------MYB83           --------->At4g35610    <------NtERF2  --------->HSFC1(2)       <---------DAG2 ------MYB46(1)   --------->WOX13(1)    <-------TEIL   ==========================HOX2a_HOX2a<-------- --------AtMYB61 <---------ICU4     --------------->AtSPL3   --------->HSFB2a(1)  <---------ATHB12 ---->ALFIN1    <---------YAB1      <---------------AtSPL3   <---------HSFC1(2) --------->WOX13(1) -------RAV1(1) <---------ATHB12  --------->At5g28300  ------>ZmHOX2a(1) <---------ARR11(3)<---------ORA47(1)   gttggtactcgctgtctcatcattcagttgtctcactgtaagtacgtccccgacgtccttagaagtttcttggaagatcagacaatcacttttgtcggcg  13802000                                                                         --------->ZAT18                                                                 --------------->AGL15                                                                 <---------------AGL15                                                                <-----------------AGL2                                                                --------->ETT(2)    --------->MYB46(3)                                          ----------------->AGL2 -----SPL7                                                      ----------------->AGL1 ----ANAC58                                         <---------LBD16      <---------ZAT18 ----ANAC46                                       --------->ARR14(2)   --------->ANAC58 ----ANAC58                                       <---------ARR14(2)   --------->ANAC58 --ORA47(2)          --------->ANAC58             <---------ARR11(3)   --------->DAG2 --RAP2.3(1)         --------->ANAC58             --------->ARR11(3)   --------->ANAC46 -DREB2C(2)      <------ZmHOX2a(1)               --------->GLK1(1)    ---------->DOF2 -At1g77200     <----------ID1             --------->At4g35610  <-----------------AGL1 -DEAR4(1)     --------->ANAC58        <-----------HVH21        <---------ZAT18 -RAP2.3(3)    --------->ANAC58       --------->AtMYB61    <---------ANAC58 >ETT(1)  --------->ANAC58           --------->MYB46(3)    <---------ANAC58 -DEAR3(1)--------->ANAC58      --------->GLK1(2)<---------GLK1(1) --------->ANAC46      <---------MYB52(1)   tatggaacagccaagacaaggacaagctcgagagattccaccatcagttggatatctggagacttgtccacataaggcactatctccatccgttgctctt  13802100                                                                                    <---------AtMYB61                                                         --------->CCA1(2)  --------->ATHB12                                                  --------->ANAC58 <---------ANAC55(2)                                                  --------->ANAC58 <---------YAB1 <---------ANAC46                                            <------ZmHOX2a(1)<------ZmHOX2a(1)    <---------ANAC58                             --------->ARR14(2)----------->TGA1    <---------ANAC46 --------->ALFIN1                             <---------ARR14(2)----------->HVH21  --------->MYB59 <---------ANAC58  -   gagtagctcgtttgagacgattgtgaaggtgtatttggggcatgaaggagtgacgaaagataaggagttatgtatgagtaattggggtgctcgtagcctc  13802200  Previous    Next  AGI:  At2g32500.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63710.1); contains InterPro domain Dimeric alpha-beta barrel (InterPro:IPR011008); contains InterPro domain Stress responsive alpha-beta barrel (InterPro:IPR013097) Range:  from: 13801503    to: 13804304    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g32490.1    Description:  pseudogene of 3'-5' exonuclease domain-containing protein Range:  from: 13801710    to: 13802290    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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