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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
RAP2.3(1)
<---------
ATERF1(1)
--------->
ALFIN1
<-----------
RAV1(1)
>>>>>>>>>>
WRKY26
---------
DOF2
--------->
ARR11(3)
--------->
AHL20(2)
---
ANAC58
<---------
ARR11(3)
------>
NtERF2
<-------
GAMYB
---
ANAC58
<----------
DOF2
------->
TEIL
------>
ZmHOX2a(2)
<------
NtERF2
<---------
At4g35610
->
HVH21
<---------
YAB1
--------------->
AtSPL8
<---------
DEAR3(1)
<-----------
RAV1(2)
--
gcttgtagtcatctttgagagaccgcctagtatgtactcgatttgatcttcatgtgggatggcgccataaattagtgccagttgatcaaaactagtagtg
16504400
<---------
ANAC58
<---------
ANAC46
<---------
MYB52(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
------->
TEIL
<---------
ARR14(2)
--------->
ARR14(2)
--------->
GLK1(2)
<---------
AGP1
<---------
CCA1(2)
--------->
ANAC46
--------->
ANAC58
<------
MYB46(1)
--------->
ANAC58
--------->
ETT(2)
--------->
ANAC55(1)
<------
MYB83
<---------
YAB1
<---------
LBD16
--------->
ZAT18
--------->
YAB1
----------------------->
TaNAC69(2)
<---------
ZAT2
<<<<<<<
ZML2
>>>>>>>>>>>>>>>>>
LFY
--------->
ANAC55(2)
--------->
ZAT2
--------->
HSFB2a(2)
<------
ZmHOX2a(2)
<---------
REM1(2)
<---------
ZAT14
<---------
HSFB2a(2)
--------->
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------------------->
WRI1
<---------
ANAC58
<--------
P
<--
---->
NtERF2
<-------
TEIL
<---------
ARR11(3)
--------->
ATHB12
<-----------
RAV1(1)
<-------
GAMYB
<
aggcctagaacatattcatcaatggaactagatcatttcttccattgtttgatttgttcacggatctgttgcttgtgtccacagctagggttggcataag
16504500
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
----------------->
AGL1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
----------------->
AGL2
<---------
ANAC58
------->
GAMYB
--------->
ANAC46
<---------
ANAC46
----------->
RAV1(1)
--------->
ANAC58
<---------
ANAC58
--------->
LBD16
--------->
ANAC58
<---------
MYB46(3)
XXXXXXXXXXXXXXXXXXXX>
MIR391
<-----------
GT1
<---------
AtMYB61
--------->
ANAC46
<---------
ZAT14
<---------
DOF5.7(2)
--------->
ALFIN1
--------->
ANAC58
--------->
DEAR3(1)
---------
HVH21
<---------
ARR11(1)
<---------
ZAT2
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
---------
WRKY12
<---------
CCA1(2)
<--------
P
----------->
GT1
<---------
ABI4(2)
--------->
At5g28300
tgtcaacgattttacgccatatctggacagaggtggtagcttggaacaagagaggttgaaccgcaacagagatagcaccgatgaggctacagtaaatgag
16504600
--------->
MYB46(3)
------>
MYB83
<---------
MYB59
<---------
WRKY18(1)
--------->
WRKY38(1)
--------->
WRKY12
----------->
HVH21
--------->
WRKY45
<---------
ARR11(3)
<-
<---------
GLK1(2)
--
<------
MYB46(1)
--------->
HSFB2a(1)
<---------
HSFC1(2)
---
<------
MYB83
------>
MYB46(1)
---
<xxxxxxxxxxxxxxxx
smallRNA(i)
<----------
DOF2
---
--------->
ARR14(2)
--------->
HSFB2a(1)
<--
--------->
LBD16
--------->
ANAC58
<---------
HSFB2a(1)
----
<---------
LBD16
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
LBD16
<---------
ARR14(2)
<---------
TOE1(2)
-----
--------->
HSFB2a(2)
--------->
ANAC46
<-----------
RAV1(2)
---------
<---------
HSFB2a(2)
--------->
MYB52(1)
<---------
ANAC46
<---------
HSFC1(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ATHB12
<-------
TEIL
--------->
HSFC1(2)
------>
ZmHOX2a(1)
----------------->
AGL1
--------->
AtLEC2
<------
NtERF2
-------->
ZAP1
<----
----------->
RAV1(2)
<---------
SPL7
<---------
DOF5.7(2)
<---------
AtMYB61
--------------->
AtSPL8
tttatcctggcacttccagagtttgtagtccggattgggagaggtaacgccatggacagtgattgtggtggcaggttctttgaccgaaccatctacgtag
16504700
<-----------
HVH21
<---------
ARR11(3)
--------
RAP2.6(3)
---->
NtERF2
------>
RAP2.6(2)
<----------
DOF2
------>
DEAR3(1)
--------------->
AGL15
<-------
GAMYB
----------->
HVH21
-------->
HVH21
--------->
MYB46(3)
--------->
MYB52(2)
-------
ETT(1)
------->
TEIL
<------
ZmHOX2a(1)
--------->
ZAT2
----->
DEAR3(2)
--------->
ANAC46
<-----------
RAV1(2)
<---------
At4g35610
---->
At4g35610
--------->
ANAC58
<---------
At4g35610
<---------
MYB46(3)
>
ANAC46
--------->
At4g35610
------->
TEIL
----------->
RAV1(1)
--------->
At4g35610
<----
-----
At4g35610
--------->
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
<---------
ZAT2
<------
ZmHOX2a(1)
<--
ccgacaaggtcatatgcacccaatagagcatgaacttgaagatgccacaggagaaagtttgttgttgtcagctttgtgacataggacatgttcacattga
16504800
----------->
TGA1
--------->
YAB1
<------
NtERF2
<---------
YAB1
------>
NtERF2
--------->
GLK1(1)
<--
<---------
bZIP60(1)
<---------
ARR14(2)
---
--------->
RAP2.6(3)
--------->
ARR14(2)
<-----
--------->
ALFIN1
----------->
RAV1(1)
*
TSS
--------->
LBD16
------
-----
TOE2(3)
----------->
TGA1
<---------
ANAC46
<---------
LBD16
---------->
DOF2
----
ZmHOX2a(1)
----------->
HVH21
---------->
DOF2
--------->
CCA1(2)
--------->
REM1(2)
----
ggagagaggtggaatcgatgacggcaacaatttctgtggagaaaga
catagccggatatgatgacgcttgaagaacaagcttgtagagaaagaaggggat
16504900
<---------
ANAC46
<------
NtERF2
<---------
ORA47(2)
<---------
DEAR4(2)
<---------
RAP2.3(1)
<---------
ERF1
------>
NtERF2
<---------
RAP2.3(3)
------------------------>
ANAC81
>>>>>>>>>
TBF1
<---------
RAP2.6(2)
--------->
MYB59
<xxxxxxxxxxxxxxx
-------
HSFB2a(2)
<---------
RAP2.3(2)
--------->
AHL20(2)
--------->
ZAT14
<---------
At4g35610
------>
HSFB2a(2)
--------->
ATERF1(1)
--------->
AHL20(1)
<---------
ZAT14
--------->
At4g35610
----
ARR14(2)
<---------
ABI4(1)
<---------
AHL20(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--->
ARR14(2)
----------->
GT1
<---------
DEAR3(1)
<---------
ARR11(3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
-->
ZmHOX2a(2)
---------->
DOF2
<----------
DOF2
--------->
ARR11(3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
cgagaagaagaagagaggtagaaaagagaggcggcgttttttgtttttaaaaatatttaggtctatatagaatcactgctctgataccatgtaatctgag
16505000
----------->
GT1
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
AHL20(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<xxxxxxxxxxx
--------->
YAB1
------>
ZmHOX2a(1)
<---------
YAB1
--------->
TOE2(3)
--------->
ICU4
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
CCA1(2)
--------->
YAB1
--------->
REM1(1)
--------->
AHL20(2)
<---------
YAB1
<-----------
GT1
--------->
YAB1
--------->
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
ANAC46
--------->
YAB1
<--------
xxxxxxx
smallRNA(i2)
------->
TEIL
<---------------
AtSPL8
<---------
ICU4
--------->
TOE1(3)
agtgaattgtcttattatgatgaatgtgttacaacatatatagtacttagtctagggtttacacaactactaatgacaattatatccttaatatatacaa
16505100
<---------
AHL20(2)
--------->
AHL20(2)
<--------------------
<---------
YAB1
<----------
DOF2
--------->
MYB46(3)
<-----------
GT1
---------
<------
ZmHOX2a(2)
--------------->
AtSPL8
<--------
xxxxxxxxx
smallRNA(se3)
<---------
YAB1
--------->
ARR11(3)
--------->
ATHB12
<----------
DOF2
---
GT1
<----------
DOF2
<---------
ARR11(3)
<---------
AHL20(2)
<-----------
GT1
<-
cttcttatattccaaacctctttggttttgatagaagcacaagaagatcaacaaataggcatataattcatttgtactcttttttttttcttttctttga
16505200
<-----------
GT1
----
ANAC81
--------->
DAG2
--------->
ATHB12
------------>
WRI1
---------->
DOF2
<---------
YAB1
--
DOF2
<---------
ATHB12
----------->
GT1
<-----------
GT1
--------
--------
AHL20(2)
---------->
DOF2
---------->
DOF2
<---------
YAB1
--------->
ALFIN1
ttttatcccaatgagttttccaaagaaaagtttaataaagcaaataactcattatgttgattaggctcaagagaaattcgaccattgaagtggaagggtc
16505300
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AGI:
At1g43724.1
Description:
transposable element gene. copia-like retrotransposon family, has a 3.1e-61 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Range:
from: 16503983
to: 16504846
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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