Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <---------ATERF1(2)                                                                              --------->At4g35610                                                                          <---------ARR11(3)                                                                          <-----------ARR10                                                                          <---------ARR11(1)                                                                          --------->ARR14(2)                                                                          <---------ARR14(2)                                                                          --------->ARR11(3) --------     --------->TOE1(2)                                                <---------YAB1------>NtERF2    <---------ZAT2                <---------HSFB2a(2)                <---------ARR11(3)      <-------    --------->At4g35610  <---------ATHB12        --------->ANAC58    --------->ARR11(3)      --------    --------->ZAT2      ------>MYB46(1)          --------->ANAC58   --------->YAB1 --------->ATERF1(2)    <---------At4g35610 ------>MYB83--------->LBD16     <----------DOF2--------->YAB1--------->At4g35610 -ARR11(3)           --------->MYB46(3)--------->HSFB2a(1)   ------->TEIL<---------CCA1(2)   <-------   atttgaagctgggaattgtgagaaccaatctttgtttccgaaggctctatcaagcctactttgaacccaaatatcatatcttctgccagcccaagtgaac  12859800                                --------->ANAC58          --------->ANAC58    ---------->DOF2                         <---------CCA1(2)                --------->ANAC58  <---------HSFB2a(2) ->ZAT14               --------->YAB1                --------->DAG2         --------->HSFB2a(2) --ZAT18        --------->At4g35610 ----------->GT1---------->DOF2    <-----------GT1 ->ZAT18   --------->ANAC58     --------->ANAC58<---------At4g35610   --------->ZAT6 --ZAT14   --------->ANAC58 <-----------GT1     --------->At4g35610<---------ICU4            <-------   ttgttcccatgggaagccatctcaaccatatcacaagcctgtaacatctcagcaaaaggcaagaacacattatcacttctcaaaggccctccaagctttt  12859900                                        ------>MYB83                                        -------->P                                                 --                                      --------->MYB46(3)                                           <-                                   --------->ANAC46                                               ---                              --------->MYB46(3)                                                  <--                              <---------ATHB12                            <---------DAG2      <------                             ------>MYB46(1)                        --------->ANAC46          -------                             -------->P ------>MYB46(1)        <-----------ARR10        <----------DOF2                             ------>MYB83                     <---------ARR14(2)     <---------ARR11(3)  <---------MYB52(1) <---------GLK1(1)--------->AtMYB61       <---------GLK1(2)      --------->ARR11(3) ---DOF2        --------------------->WRI1    <----------DOF2 --------->ARR14(2)     <-----------GT1   ctccattatgcaatatgtcattgaaatctccaaccatacaccaactctcttttctgccaatgccgattctactcagcctttccaaattatctttttttaa  12860000                                                 --------->MYB52(1)                                                 ------>MYB83                                               --------->AtMYB61                                               <---------MYB111(2)                                               <---------MYB46(2)                                               <---------MYB59           ------>ZmHOX2a(2)                   --------->MYB46(3)                                   <          <------ZmHOX2a(2)                    <---------MYB111(1)                              <----         --------->ARR14(2)                   --------->ANAC58                                 ------         <---------ARR14(2)       ---------->DOF2------>MYB46(1)    <---------MYB52(1)        <------ZmHOX2a(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ANAC58 <---------ARR14(2)            <------- ------->AHL20(2)            --------------->AGL15             --------->ARR14(2)            <------- --------AHL20(2)            <---------------AGL15            --------->GLK1(1)              -------- ------>AHL20(2)            ----------------->AGL2            <---------CCA1(2)              -------- -------AHL20(2)            ----------------->AGL3         <-------TEIL<---------TOE2(3)     -------- ---AHL20(2)     --------->ARR14(2)        --------->At4g35610<---------GLK1(1)        <---------ANAC55(2) -->AHL20(2) --------->LBD16----------------->AGL1        --------->AtLEC2      --------->YAB1-------   tttaaaaactggatccccatatatacaagagccaaaaaaagaaacagcaccaaactgaacatgcatatccattaagtttttatcaaaatacttaagatcc  12860100    <---------ALFIN1    <-----------GT1 <---------MYB52(1) -----------HVH21                              --------->MYB46(3) -----ALFIN1                              --------->HSFB2a(2) --->MYB46(3)                     --------->AtMYB61      --------->At5g28300 --ARR14(2)                       <---------ALFIN1      ----------->GT1            ------>MYB46(1) --ARR11(3)                      --------->MYB46(3)     <---------ZAT6             ------>MYB83 ->ARR14(2)                --------->ANAC58  <---------ALFIN1                    <---------MYB59 ->AGP1   <----------DOF2  --------->ANAC58  --------->MYB52(1)                 --------->MYB46(3) ->ARR11(3)   --------->YAB1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->MYB52(1) -->CCA1(2) --------->AHL20(2) --------->AtMYB61   <----------DOF2          <---------MYB59   accgttacaccgcttttaataaacagggcaagaccaccactcttccccaacggctctactgtaaaaacccgctcatagcctaaccaaacttgcatatcaa  12860200                                                                                                 ----                                                                                        <---------ARR11(1)                                                                                        --------->ARR11(3)                                                                                        <---------ARR14(2)                                                                                        <---------ARR11(3)                                                                   <----------DOF2      --------->ARR14(2)                                                               --------->GLK1(1)       ------>MYB46(1)                      --------->ANAC46                         <---------CCA1(2)       ------>MYB83<-                      *TSS                  --------->LBD16--------->ANAC58            <---------ARR14(1)                --------->YAB1            <---------LBD16  --------->ANAC58            <---------CCA1(2)         ------>ZmHOX2a(1)            <---------ARR11(3)  ---------->ID1      <------ZmHOX2a(1)  ----   ctaatacattcctactattcatagactccatcaagaacaacatctctgggaaatgtttttgacgcatttctttgagacgaggaatcaccaaatcttgaga  12860300                     ----------->RAV1(2)                     --------->ZAT2                     --------->At4g35610                     <---------ZAT2            ------------>CBF              --------->ALFIN1         ------>ZmHOX2a(1)                <---------MYB52(1)        <xxxxxxxxxxxxxxxxsmallRNA(s)     <-------GAMYB        <---------ANAC58                <---------ANAC58                         <---------TOE2(3)        <---------ANAC58     <---------YAB1              --------------------->WRI1 <----------DOF2 ----------->AtSPL8  <---------At4g35610<---------ANAC58 <----------DOF2--------->At4g35610     <---- --------SPL7  --------->GLK1(1)<---------YAB1         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ----- ----------->AtSPL3<-----------RAV1(2)  <---------DEAR3(1)      <------ZmHOX2a(2)<---------TOE1(3)  -   ccgtaccagtccttggcaattccagctgatgatgctaattgggcgttgggcaatcccccctttgggatcacctctgatgaattaagcttttttgttttag  12860400                                                                            <---------------AGL15                                                                            --------------->AGL15                                                                           ----------------->AGL2                                                                           <-----------------AG                                                                           ----------------->AG                                                                           --------->ANAC46                                                                           <-----------------AGL1                                                                           ----------------->AGL1                                                                      <---------ARR11(3)                                                                --------->ZAT6  --------->ZAT2                                  <----------DOF2             <-----------GT1   ----------->RAV1(2)  <---------ANAC58              ---------->ID1            <----------DOF2 -------->P  <---------ANAC58         <----------DOF2       <---------HSFB2a(2)  <-----------ARR10 -----At4g35610  <---------At5g28300    <-----------GT1 ------>MYB46(1)  <-----------GT1 ---->At4g35610 <-----------GT1<-----------GT1   --------->HSFB2a(2)  --------->ARR11(3) -------->ARR11(3)    <----------DOF2  <-----------GT1  ------>MYB83 <---------CCA1(2)           <---   cagagcttgttccttcatttactgctttccttttttctttttttccgacttccagaccaacttttaaccctatatctaccccatctggcaagggagttag  12860500                                                                           <-----------HVH21                                                                         --------->ZAT2                                                                  --------->ANAC58                                                                  --------->ANAC58                                                                 --------->SPL7                                                               --------->LBD16                                              <----------DOF2  <---------SPL7          --------------------->WRI1       ---------->ID1      ----------->HVH21          <---------ANAC58        <---------ANAC46           <---------LBD16          <---------ANAC58        <---------ANAC58   ----------->GT1     --------->At4g35610  ------- ---ZmHOX2a(1)                    <---------ANAC58   <---------ZAT6<---------SPL7           ------>ZmHOX2a(1)   gagcttgaatttccttgtgttcttcgagggtctcttccttgttttgttctttttagtgttaaacccggacggaccagcttcagagaaaccagtcctaaaa  12860600                                                                                         <------ZmHOX2a(2)                                                                                        <---------ARR14(2)                                                                                        <---------ARR11(3)                                                                                        --------->ARR14(2)                                                                                        --------->ARR11(3)                                                                                        --------->ARR14(3)                                                                                        <---------ARR14(3)                                                                                        --------->AGP1                                                                                    ------->GAMYB                                                                                   --------->MYB46(3)                                                                                   <---------ATHB12                                                                                  ------>MYB46(1)                                                                                  ------>MYB83                                                                                --------->MYB46(3)                                                                                --------->DEAR3(1)                                                                                <---------MYB111(1)                                                                                <---------MYB55(2)                                                                                <---------MYB46(2)                                                                                --------->AtMYB61                 --------->DAG2               ------>MYB83 <---------ALFIN1     <---------MYB111(2)      ----------->HVH21                       ------>MYB46(1)                  --------->MYB46(3)    --------->At4g35610          --------->ANAC58     --------->MYB46(3)  --------->ANAC46------>ZmHOX2a(2)    <---------At4g35610          --------->ANAC58   --------->AGP1   <<<<<<<<<TAC1-------->P<--------   <---------MYB46(3)          --------->TOE1(2)    <-----------ARR10--------->ANAC46 ----------->ARR10 <---------MYB52(1)    <---------TOE2(3) <-----------GT1-------->P --------->ZAT6--------->MYB55(1) --->DOF2      ---------->DOF2 --------->TOE2(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------AGP1   gccgatggctgacactgaaaaggttgagataaaccaaggaagtttaccaactcagaactacccacatgaacactcgactccaccaaccaagatctgtcag  12860700  Previous    Next  AGI:  At1g35146.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.9e-33 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 12856176    to: 12860222    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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