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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--
----------->
GT1
<-----------
HVH21
<---------
GLK1(2)
--------->
CCA1(2)
<---------
YAB1
<-
--------->
At4g35610
<-------
TEIL
--------->
bZIP60(1)
--
--------->
AtLEC2
--------->
GLK1(2)
<-------
TEIL
<---------
bZIP60(1)
<-
agaacatgcagagtttgatgtcaaagtttacaactggagcatctgtatttga
aagatacatacagtgtcagtgtgtcatcatcttgattcttgtaaattg
95600
--------->
GLK1(1)
<-----
--------->
CCA1(2)
-------
<----------
DOF2
<---------
GLK1(2)
<-------
<---------
AHL20(2)
--------->
ARR14(2)
----------->
GT1
<--------
<---------
AHL20(2)
--------->
GLK1(2)
<---------
ANAC58
<--------
<-----------------
AGL3
--------->
ARR11(3)
<---------
ANAC58
<--------
------->
ARR11(3)
<---------
ARR11(3)
<---------
ANAC46
<----------
DOF2
--------
AHL20(1)
<---------
GLK1(2)
--------->
YAB1
<---------
ANAC46
------>
ZmHOX2a(1)
------->
AHL20(1)
---------->
DOF2
<---------
ARR14(2)
<-----------
HVH21
<---------
ARR11(3)
--------
ARR11(3)
----------->
GT1
--------->
At4g35610
--------->
AHL20(2)
<XXXXXXXXXXXXXXXXXXXX
MIR866-5P
atatatttttttgggacctttggaaaaaataaaagcagaagaatctttcag
atttgcaattaaaaacgatgtcgtgtggtaaacaaaatcctttgcttga
95700
<---------
O2
--------->
ZAT2
<------
MYB46(1)
<---------
ZAT2
<---------
MYB46(3)
------>
MYB46(1)
----
WRKY18(1)
<------
MYB83
------>
MYB83
---->
HVH21
<---------
AtMYB61
--------->
AtMYB61
--
WOX13(1)
<--------
P
--------->
MYB46(3)
<-----------
GT1
-
ANAC58
<---------
MYB52(1)
------->
GAMYB
<---------
ZAT14
------>
NtERF2
-
AtLEC2
<---------
ANAC58
--------->
MYB46(3)
----------->
HVH21
<---------
ANAC46
---
-
ANAC58
<---------
ANAC58
<---------
WRKY12
--------->
ZAT14
----------->
RAV1(2)
-----
ccaagtcgttctcttcttgcttctggttggtttacttcatagttcaacgaccaccaagctgtgaagtgaccgtattacccctgcctggaatcaaggtcaa
95800
--------->
GLK1(2)
<---------
MYB52(1)
--------->
LBD16
--------->
At5g28300
--------->
LBD16
<---------
MYB46(3)
<-------
GAMYB
--------->
ANAC58
<------
MYB46(1)
----------->
GT1
--------->
At4g35610
--------->
ANAC58
<------
MYB83
--------->
MYB52(1)
<---------
ANAC46
<------
NtERF2
<---------
AtMYB61
---------->
DOF2
--------->
MYB52(1)
<---------
LBD16
<---------
MYB52(1)
<---------
DOF5.7(2)
----------->
HVH21
--------->
At4g35610
------>
DAG2
--------->
SPL7
<---------
ARR14(2)
<-----------
HVH21
<---------
At4g35610
----->
DOF2
<---------
ICU4
--------->
ARR14(2)
--------->
GLK1(2)
--------->
MYB46(3)
aaggccccggaaaatcagtacgttggtagcatttggatttggagataacgccgttaaaagactctgtaacgggtttgctcaacagctctctctagttcgt
95900
<---------
ALFIN1
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(2)
<-----------
HVH21
<-----------
TGA1
--------->
bZIP60(1)
<---------
O2
<---------
bZIP60(1)
--------->
O2
<---------
TGA2(1)
--------->
TGA2(1)
----------->
STF1
------>
MYB83
--------->
TGA2(2)
------>
MYB46(1)
<---------
At4g35610
<---------
MYB59
--------->
At4g35610
<---------
DAG2
<---------
TGA2(2)
<---------
MYB59
------>
NtERF2
--------->
TOE2(3)
--------->
TGA1a
-
--------->
TOE1(3)
<---------
TGA1a
<--
<-----------
GT1
----------->
TGA1
<--
================================
bZIP_DOF
<-----------
GT1
<---------
MYB52(1)
--------->
WRKY12
<---------
At4g35610
<--
----------->
GT1
--------->
ANAC55(2)
--------->
ARR14(2)
--------->
ZAT6
<----
--------->
ANAC58
<---------
DAG2
----------->
HVH21
<---------
MYB52(1)
-----
--------->
ANAC58
<----------
DOF2
<---------
At4g35610
<-----------
HVH21
*
TSS
<-----
ttatcgaattagataatgccactccaaaaaacgttactttaccttacctatctcgctgacgtcagatcccaccgttagagcttaca
cttgtaacgccgtt
96000
--------->
ANAC58
--------->
ANAC46
<---------
HSFB2a(2)
--------->
HSFB2a(2)
----->
ZmHOX2a(1)
-------
ANAC46
-------
ANAC58
--------->
ZAT18
-------
ANAC58
--------->
ZAT14
-
-----
ARR14(2)
---------->
DOF2
-
---->
ARR14(2)
----------->
GT1
<---------
ZAT14
----------->
GT1
<---------
ANAC58
---
----
MYB52(1)
--------->
ANAC58
<----------
DOF2
>>>>>>>>>
TBF1
<---------
ANAC58
------
tcctgcattttccacaagcaaggtaaaaaaaagctttgtgcagagagagagagaagaagaaaa
atgggtttgcttacgaacaagattgagagagaagagc
96100
<------
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
GLK1(1)
<----------
DOF2
--------->
GLK1(1)
--------->
At5g28300
<------
ZmHOX2a(1)
----------->
GT1
<-----------
RAV1(2)
--------->
ANAC58
-------->
ANAC58
--------->
ANAC58
-------->
ANAC58
--------->
ANAC46
<--------
------->
DOF2
<---------
ALFIN1
<-------
TEIL
<----------
DOF2
--->
At4g35610
--------->
KAN4(2)
--------->
TOE2(3)
<---------
TOE1(2)
taaagccaggagatcacatctatacttacagagcaatcttcgcttattctcaccacg
gtaactttagattcattcttcccaagtttgctcctttctttct
96200
----------->
GT1
<------
MYB83
--------->
DAG2
<---------
DEAR3(2)
---------->
DOF2
<------
MYB46(1)
--------->
TOE2(3)
----------->
GT1
--------->
YAB1
<----------
DOF2
<---------
MYB46(3)
<---------
ICU4
--------->
AtLEC2
<---------
DEAR3(1)
--------
--------->
WOX13(1)
------>
ZmHOX2a(1)
<---------
ORA47(1)
---------
--
DOF2
<---------
ATHB12
--------->
TOE2(3)
<----------
DOF2
<--------
P
<---------
YAB1
cgttcattcaatcataacatcaaaaagtgaaattatcctcaatgcaagtcttttcttttagtttctactggtcggtttaatcttcttattgaaactgtaa
96300
<<<<<<<<<<<<<<<<<
LFY
------>
MYB83
<---------
ARR11(3)
------>
MYB46(1)
<---------
AGP1
<---------
MYB59
--------->
AGP1
<---------
WRKY18(1)
--------->
ARR11(3)
----------->
HVH21
<----------
DOF2
------>
ZmHOX2a(2)
<---------
ANAC58
<---------
DOF5.7(2)
<---------
ARR14(2)
<---------
AtLEC2
---------->
DOF2
--------->
ARR14(2)
<---------
ANAC58
->
At5g28300
<---------
DAG2
<------
ZmHOX2a(2)
<---------
ICU4
----------->
RAV1(2)
-->
GT1
--------->
WRKY12
----------->
ARR10
<---------
ATHB12
<-----------
GT1
<-----
attcacaaagttgacgactttatctagatagatcttgaagacaatggtctatattccaatctttgcatgacctaatttcaccctggctctgtattttgat
96400
------>
ZmHOX2a(2)
--------->
GLK1(1)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ARR11(1)
<-----------
ARR10
<----------
DOF2
<-----------
GT1
<---------
CCA1(2)
------->
TEIL
----------->
HVH21
--------->
YAB1
<---------
WOX13(1)
<---------
AHL20(2)
------>
ZmHOX2a(1)
----
TOE2(3)
<---------
GLK1(1)
<---------
YAB1
<---------
AHL20(2)
<
gttattccatcatatcttctgatctctgatggactttatagatgatttttgtttatttgacatatttttatcccaatttcctctggtgatgaagaattga
96500
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AGI:
At1g01220.1
Description:
GHMP kinase-related. similar to hypothetical protein OsI_009504 [Oryza sativa (indica cultivar-group)] (GB:EAY88271.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66976.1); similar to hypothetical protein OsJ_008832 [Oryza sativa (japonica cultivar-group)] (GB:EAZ25349.1); contains InterPro domain Ribosomal protein S5 domain 2-type fold (InterPro:IPR014721); contains InterPro domain Mevalonate and galactokinase; (InterPro:IPR006206); contains InterPro domain GHMP kinase, C-terminal (InterPro:IPR013750); contains InterPro domain L-fucokinase (InterPro:IPR012887); contains InterPro domain GHMP kinase; (InterPro:IPR006204)
Range:
from: 91750
to: 95651
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At1g01225.1
Description:
NC domain-containing protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00905.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66977.1); contains InterPro domain NC (InterPro:IPR007053)
Range:
from: 95987
to: 97407
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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