Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->YAB1                                                             <---------ATHB12                                                            --------->ANAC58                                  --------->ANAC58          --------->ANAC58 --------ARR11(3)         ------->TEIL                      --------->ANAC46 ------->ARR11(3)       <-------TEIL                 <---------ARR11(3)                             < ------->GLK1(2)     --------->At4g35610             --------->ARR11(3)                     <-------- ------>RVE1(1)  ----------->RAV1(1)                --------->CCA1(1)         ------>ZmHOX2a(1)<----- -->GT1         --------->MYB46(3)--------->ANAC58  --------->RVE1(1)   <----------DOF2  <-----------GT1   aaatctgtgtgtctactaacaacagatgcatcttgcaagtcaattccatcacaaatatctccaagcatcaaactcttttcctgtgaaattgtttccacct  23047400                                                                  --------->ANAC58                                                                  --------->ANAC58                                                               <-------GAMYB                                                              <---------DEAR3(2)                                                    <---------GLK1(2)                                             <---------WOX13(1)<---------SPL7                                          <---------MYB52(1)  --------->MYB55(2)                                         --------->LBD16      <---------MYB46(3)     --------->GLK1(2)                     --------->ANAC58   <---------ANAC58    <---------MYB52(1)    --------->ARR14(2)                     --------->ANAC58   <---------ANAC58  <---------DEAR3(1)    --------->LBD16                     --------->ANAC46   <---------ANAC55(2)------>NtERF2       --------->LBD16   <---------ALFIN1<---------ALFIN1     <---------ANAC46 <---------LBD16      <---------LBD16 -----------GT1 --------->ANAC46        --------->ANAC55(2)--------->LBD16   <---------LBD16 -ALFIN1      --------->At4g35610      ----------------->AGL1<---------DEAR3(1)--------->HSFB2a(2) ----DAG2   <-----------GT1       <---------YAB1  --------->AHL20(2) <---------TOE1(2)   tctcaccacttgaatcaccagacactccattgagttttgattccgtaattgataaattctccggcggttcgcaagtttctcccggagactcttgagcaat  23047500                                                     --------->MYB46(3)                                                     <-----------RAV1(2)                                                   ----------->RAV1(1)                        -------                                                   --------->MYB52(1)                         <------                                                --------->ANAC46                             <-------                                                --------->ANAC58                             <-------                                      --------->ANAC58                                     <---------                                      --------->ANAC58        <----------DOF2              --------->WOX13(1)                                      --------->ANAC46      ------->TEIL                  <---------AHL20(2)                                    <-----------RAV1(2)--------->At4g35610    --------->HSFB2a(2)   -                                    ===========================RAV            <---------HSFB2a(2)  --                       --------->At4g35610      --------->ANAC58       <---------YAB1     --------->AHL20(2)   ttctatgtaagaaaacacaaatagcatcagaaatagtttcaggcaatttcaagcaacagatgaactttgaattttgattactagaagatgaattaatcat  23047600                                                                <---------MYB52(1)                                                        <---------ARR14(2)                                                   <---------HSFB2a(2)                                                   ------>ZmHOX2a(1)    --------->ARR11(3)                             --------->LBD16    <---------ARR11(3)                             --------->HSFB2a(2) -->YAB1                                          <---------LBD16 ---ICU4                                         ----------->RAV1(2) --YAB1                                       --------->At4g35610 --ATHB12     <---------------------WRI1      <---------At4g35610--------->ALFIN1 --GT1 <----------DOF2                        --------->ZAT2  --------->ATERF1(2) ----->ZmHOX2a(1)          ----------->HVH21  <---------ZAT2--------->MYB52(1)               <------ZmHOX2a(2) ------->TOE1(2)        --------->ZAT6 --------->SPL7   --------->ARR14(2)           --------->ATERF1(1)   tcctaagaactttgacttcgaatcgaacactgacctgttcgtaagaccagctcctggagaactgccggtgtggcaagagaaatttgaggctcccgatcga  23047700                                                         <---------MYB46(3)                                                         <---------DEAR3(2)                                                        <---------DEAR3(1)                                                        <---------At1g77200                                                      <-----------HVH21                                                     <---------ANAC58                            ----                                                     <---------ANAC58           --------->HSFC1(2)                                                    --------->SPL7              <---------HSFC1(2)---                                                    <-------TEIL                <---------HSFB2a(1)                                                 <---------ANAC46          --------->ANAC58     <----                                                 <---------ANAC58          --------->ANAC58    ------                                                 <---------ANAC58         <---------LBD16      ------                                              <---------ARR14(2)        ----------->HVH21     -------                    ---------->DOF2           --------->ARR14(2)       --------->DEAR3(2)     -------                --------->DAG2   <-----------GT1<-------TEIL     --------->MYB52(1)          <-------               ---------->DOF2<---------ICU4 --------->At4g35610<---------ARR14(2)           --------        --------->DAG2       --------->ICU4  <---------At4g35610--------->ARR14(2)--------->GLK1(2)       ---------->DOF2    ----------->GT1 <---------At4g35610  <------ZmHOX2a(1)--------->HSFB2a(1)<-   aactcgagcaaaagtgataaagcaaagagcgataatttcgattcggcagatgcgtgcgtcggtgaggaaacggagcgacggaagattccattgtctccgc  23047800                                                                           <---------MYB46(3)                                                                          --------->ALFIN1                                                                         --------->ATERF1(1)     --------->KAN4(2)                                                   <-------GAMYB    <---------KAN4(1)                                                    <------NtERF2              <    --------->KAN4(1)                                                   <---------MYB46(3)          <   <---------KAN4(2)                                                   <---------ANAC58             < ----->DEAR3(1)                                                        <---------ANAC58 --------->GLK1(2) ------>LBD16                                                          <---------DREB2C(2)    <------ -----LBD16                                                            <---------DEAR4(1)    -------- >NtERF2                                            <------NtERF2      <---------DEAR3(1)   <-------- --->LBD16                                         --------->LBD16     <---------RAP2.6(2) <--------- -->ANAC46            --------->ARR14(2)          --------->DEAR3(1)   <---------ANAC46 --------->ARR11(3) -->DEAR3(1)          <---------MYB52(1)         <---------LBD16  <-----------RAV1(1)   <---------ARR11(3) --LBD16--------->TOE2(3)             <---------ANAC58        <---------RAP2.6(3)  --------->AHL20(2) ->ATERF1(1) --------->MYB46(3)       <---------ANAC58 ---------->DOF2<---------ABI4(1)--------->RVE1(1) -----NtERF2-------->P<---------ARR14(2)    <----------DOF2  --------->RAP2.6(2)   <---------AHL20(2)   cggagaataatctcaaccagtaccgataggctcaacttcggcttgtctttcgccggagaaaggccgtcttgtggcggtggacgatttaaaaatctttatt  23047900                                                                             <---------TOE2(3)                                                                            <---------ICU4                                                                      ----------->GT1                                                                     <------NtERF2                                                                     <-----------------------TaNAC69(2)                                                                    ------>NtERF2 ------>ZmHOX2a(2)                                                                   --------->DEAR3(1)                                                              --------->MYB52(1) <------ZmHOX2a(2)                                                             ------->GAMYB  --------->YAB1      <----    <---------CCA1(2)                                       <---------MYB52(2)  <---------ARR14(2) ---------ANAC46                                            <---------MYB55(2)  --------->ARR14(2) ---------ANAC58                                       ------>ZmHOX2a(1)   --------->ICU4   --------- ---------ANAC58                                       ==================================HOX2a_HOX2a ------CBF     <---------TOE2(3)                       =================================HOX2a_HOX2a ->ATHB12  <----------DOF2                         ------->TEIL    <---------DEAR3(1)   --------->TOE1(3) -YAB1   <---------YAB1                     ------------>CBF--------->MYB46(3) <------ZmHOX2a(1)----- -DOF2 --------->YAB1          ------>ZmHOX2a(1)<---------ATHB12   <---------ANAC46     --------->TOE2(3)   gggcttgtatcatctttgatgttaatgggcttcctgattttgtaggcccaatgaatccttcaacaaacggcgtcgtaataaggatccaaaccctaaaaga  23048000                                                                                        --------->DAG2                                                                                       --------->DAG2                                                                <---------ICU4        ---------->DOF2                                                               <---------YAB1      ----------->HVH21 <---------TOE2(3)                                      --------->ZAT2           ----------->GT1 -----ARR11(3)                                          <---------At4g35610      --------->LBD16 ->DOF2     *TSS                                        <---------ZAT2         <---------LBD16<------ZmHOX2a(1) ---->ARR11(3) <-----------------AGL1                   --------->At4g35610  <-----------GT1 --------   tttatggattcagagttttcgaaattggaatttctcactctctctatctctcttagccagctctgatcatttcgatttttttccggtgaaaagggaggag  23048100                                                                                ------>ZmHOX2a(2)                                                                               <---------GLK1(1)                                                                               <------ZmHOX2a(2)                                                                               --------->GLK1(1)                                                                              <---------ARR14(2)                                                                              --------->ARR11(3)                                                                              <---------AGP1                                                                              <---------ARR11(3)                                                                              --------->ARR14(2)  ---                                                                              --------->ARR14(3)-----                            --------->CCA1(2)                                 <---------ARR14(3)<----             ------->TEIL----------->ARR10                           <---------YAB1             -----          --------->ANAC55(2)                                      <---------At4g35610          <----          <---------ANAC55(2)                                      <---------ZAT2         <---------ANAC46       <---------SPL7  --------->ETT(2)                            --------->At4g35610  --------->CCA1(2)     <---------------AtSPL8--------->ARR14(2)                    <---------RAP2.6(2) --------->ANAC46     <---------------AtSPL3<---------ARR14(2)           <---------TOE1(3)    <---------CCA1(2) ------ --->GT1 ------->TEIL  <---------ETT(2)                 <---------TOE2(3) <---------At4g35610  ------   aaacatggttgtacgtatcagactgtcgagatttggatgcaaaaatcggccattttttagggttatggctgctgatagcagatctccaagagacgggaag  23048200           <---------TOE1(2)           <---------TOE2(3)      <---------ARR11(3)      --------->ARR11(3)              <---------WOX13(1) ------>ARR11(3)                    --------->ATHB12 ---->HSFB2a(1)                  <---------At4g35610                                                < -----HSFC1(2)                   <---------ZAT2                                                     = ---->HSFC1(2)            ------>ZmHOX2a(1)                                                        <- -----HSFB2a(1)           <----------DOF2                                                          -- --->ANAC58<---------TOE2(2)     --------->O2                                            --------->AHL20(2) --->ANAC58<---------TOE1(3)   <-----------RAV1(2)                                       <---------AHL20(2)   catcttgaggtcttaggttacttcaatcctttgccaggtgattgacaaaacaaaatgtattccaattggtgttgttcgtagagttttcgattaaaataca  23048300  Previous    Next  AGI:  At5g56930.1    Description:  EMB1789 (EMBRYO DEFECTIVE 1789); nucleic acid binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO65335.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 23045118    to: 23047791    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g56940.1    Description:  ribosomal protein S16 family protein. similar to SSR16 (ribosomal protein S16), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G34620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65337.1); contains InterPro domain Ribosomal protein S16; (InterPro:IPR000307) Range:  from: 23048012    to: 23049637    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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