Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->ARR11(3)                                  <----------DOF2                           <---------WOX13(1)                         --------->ATHB12<---------ARR11(3)                        <---------YAB1  --------->YAB1        --------->YAB1  --------->ICU4 <---------YAB1                         <---------ALFIN1       <---------YAB1 ---------->DOF2--------->YAB1                   <---------ZAT14------>ZmHOX2a(1)   aaacaacttatcaaaaaaaactgataaagattgatacttttatgatattagcaaaacccttaccatggagactgaacttcccacttcctcttaaccaaaa  23039500                                                                                    ------>NtERF2                                                                                   --------->ANAC46                                                                                   --------->bZIP60(1)                                                                                   <---------bZIP60(1)                                                                                   --------->O2                                                                                   --------->ANAC58                                                                                   --------->ANAC58                                                                                   --------->bZIP60(2)                                                                                ----------->HVH21                                                                               --------->SPL7                                                                              --------->ALFIN1                                                                            <---------ANAC58                                                <----------DOF2       --------->ARR11(3)                                              --------->ZAT2          <---------ARR11(3)                                              <---------At4g35610     <---------GLK1(2)                                              <---------ZAT2  <---------------------WRI1           --                                              --------->At4g35610   ----------->ARR10  ------>NtERF2                                       <---------GLK1(2)      <------NtERF2 <---------ANAC58     <---   caaattgtggcaaacttcgagtccatccatcttaaacccttgattctcagctttcttcgaagtcgtcgataagattttgggtgcgacgacaccatagtct  23039600                                                                             ----------->GT1                                                                            <---------LBD16                                                                          <---------ARR14(2)                                                                          --------->GLK1(2)                                                                          --------->ARR14(2)                                                                     --------->LBD16                                                                    <---------HSFB2a(2)       -------                           --------->At4g35610                      --------->HSFB2a(2)    ----------                           <---------At4g35610                     <---------LBD16        --------->SPL7  --------->ZAT14   --------->ARR14(2)                        <---------GLK1(2)         <-----------HVH21 ------->LBD16      <---------ARR14(2)                     --------->HSFB2a(2)--------->LBD16 ------- ------LBD16 <------ZmHOX2a(1)          --------->ANAC46   <---------HSFB2a(2)----------->GT1 -------   ccggtgaagtaagtaggaatcggaacttgagctcgaccttcgacgtaatccaaaaactcatctagaatttctggagaatcgggaaaaaactgtccgacgc  23039700                        <---------GLK1(2)                        --------->ARR14(2)                        <---------ARR14(2)                                     --------->At4g35610                      ----------->ARR10                                        <---------At4g35610                    <---------At4g35610                                        ----------->GT1                    --------->At4g35610                               <-------TEIL                   ----------->RAV1(1)   --------->DAG2              --------->CCA1(2) -->ANAC58        <-----------RAV1(2)   --------->ICU4              --------->ARR14(2) ->HVH21       <---------PCF5     --------->TOE1(2)                 <---------ARR14(2)       -------- -->ANAC58    <----------ID1    -------->P              --------->AHL20(2)   <-----------RAV1(2)    < -->ANAC46---------->DOF2--------->GLK1(1)              <---------AHL20(2) --------->GLK1(2) <-------   aaatcagagcatcaaagggaccagcagatttgctaacctgcaaaaattggagttcgatttaaaaattggagatacagaatcaggtgaaatcggagagcag  23039800                                                                 ------>ZmHOX2a(2)                                                                --------->GLK1(1)                                                                <------ZmHOX2a(2)                                                               --------->ARR14(3)                                                               <---------ARR14(3)                                                               <-----------ARR10                                                               <---------ARR11(3)               *TSS                                                               --------->ARR11(3)           ---------           <---------YAB1                     <---------WOX13(1)<---------GLK1(1)        <------NtERF2           <---------ZAT6                   --------->ATHB12   <---------ARR14(2)      --------->RAP2.6(2)       --------->ARR11(3)                <---------At4g35610   --------->ARR14(2)     <---------ZAT18 ->At4g35610                   --------->ANAC58     <---------TGA1a                <---------HSFB2a(2) ------ZmHOX2a(1)              --------->ANAC58     --------->TGA1a      ----------->GT1------>NtERF2 --At4g35610          --------->ATHB12   --------->At4g35610  <------ZmHOX2a(1) --------->GLK1(2)  --   aaggagaaagatagtgatagagaccgattggacacgcttgaagagctgattgagacgtccaagaggatctccacagagtaaaattctgggcgccatgaca  23039900                                      ------------>CBF        <---------ZAT14              ------->GAMYB        --------->ZAT14             --------->MYB46(3)        ----------->HVH21      --------->ANAC58     <------------------SPL14  --------->ANAC58  <<<<<<<<<<<<<<<<<LFY       ---------->DOF2     <---------ATERF1(1) ----------->HVH21          <------ZmHOX2a(1)<---------ANAC46 <---------bZIP60(1)     <------ZmHOX2a(1) --------->MYB52(1) --------->bZIP60(1)   --------->ALFIN1   ----------->HVH21                  --------->YAB1 -->HVH21             <------ZmHOX2a(1)   ----------->TGA1            <----------DOF2 ------->YAB1   <------ZmHOX2a(1) --------->MYB52(1)             <----------DOF2   gtgatgacactggacggaggagaaggaggaggaaagcaacgacaatgacggagacgactatttgagacttttctttcactcttaatgggcttctaatgag  23040000                                                                                                    -                                                                                                    <                                                                                                   <-        <---------ZAT18                                                                          ----        --------->ZAT18                                                                          <---     <---------ANAC46                                                                           <----   <---------ZAT14                                                                            -------   --------->ZAT14                                  --------->ZAT6            <---------DAG2  <------  <---------MYB52(1)         <---------At4g35610 <----------DOF2              <----------DOF2<-------   cccagttaagtgggcttctcatgagccattcatctaatatttgagccttctctttcactactaaatgggcttctcatgagctttttttttctcaaatcat  23040100   <---------ICU4  <---------YAB1 -------->YAB1 ---------ICU4                                  *TSS --------YAB1                                <------------CBF                                      <- ----->YAB1                                 <---------ICU4                                        <-- ------ICU4                                <---------YAB1                                   <-------- -----YAB1                              --------->ANAC58                                   <-------GAMYB -->YAB1                                --------->ANAC46                                  <---------ANAC58 ---ICU4                                --------->ANAC58 <-----------GT1                  <---------ANAC58 --ATHB12                 ---------->DOF2  <---------ATHB51             <-----------GT1  --------->ZAT18   catcatcattcatccatctatatttcaaaaaagaaaacaaacacgataattgtcttctattacctctctctcattcacctctcgctaagtgtgcgttagc  23040200                                                                       --------->LBD16                                                                      --------->LBD16                                                                    =================================HOX2a_HOX2a                                                                   ==================================HOX2a_HOX2a                                                                  --------->ARR11(3)                                                                  --------->ARR14(2)                                                       ------>NtERF2------>ZmHOX2a(2)                                                       <---------RAP2.6(3)                         <---------ARR14(2)           --------->RAP2.6(2)                        <------NtERF2                 <---------RAP2.6(2)                        ------>NtERF2                 --------->ATERF1(2)                      <---------ANAC58                <---------ATERF1(2)                      <---------ANAC58               <---------ANAC58<---------HSFB2a(2)         ----                <---------ATHB12                     --------->ATERF1(1)                         ====                --------->ICU4                       <---------ANAC58--------->HSFB2a(2)      <------ZmHOX2a(1)           <------ZmHOX2a(2)                    <-----------RAV1(1)<------ZmHOX2a(2)         --------     <---------ARR14(2)<---------SPL7      --------->DOF5.7(2)    <---------ARR14(2)         <-------     --------->ARR14(2)<---------ZAT18   ----------->GT1          <---------ARR11(3) <---------ANAC58  <---------TOE1(3)   <---------ANAC46 <------ZmHOX2a(1)<------NtERF2----------------->AGL1  <------- --------MYB52(1)<---------ICU4        ===================================HOX2a_HOX2a<---------ANAC58 -------RAP2.6(3)--------->YAB1        ====================================HOX2a_HOX2a       -------- -MYB52(1) ===================================HOX2a_HOX2a     ---------->DOF2    ---------->DOF2 ====   cgttagggttccgatctaatcatggcggactctgttttgaaggaggttaactgtggccggcctgaaaagatcccgaagttggacaaagcttgcgaaggat  23040300                     --------->ANAC58        <---------HSFB2a(2)        --------->HSFB2a(2)        --------->LBD16         <-------MYC3        ------>ZmHOX2a(1)       ------->MYC3    --------->ARR11(3)       <---------LBD16<---------STY1(2)         <---------ARR11(3) -->ZmHOX2a(2)       --------->ANAC58           --------->GLK1(2) ==============HOX2a_HOX2a <------ZmHOX2a(1)    --------->ARR14(2)                           <------- ->HSFB2a(1)   <---------ARR11(3)     <---------At4g35610                                   --------- --HSFB2a(1)   --------->ARR11(3)--------->ALFIN1                                          <---------TOE2(1) --HSFC1(2)  --------->HSFC1(2)<---------O2<---------YAB1                      --------->GLK1(1) ->HSFC1(2)  <---------HSFC1(2)<---------ANAC46 <---------ARR14(2)     --------->ZAT6      <---------TOE1(1) =================================HOX2a_HOX2a   <-----------ARR10 --------->MYB52(2)  ---------->DOF2   cgaaatcgtcctggaaacatctcaagctaggaaacgtggaagatgatgagtatcttcgacagtattgtttgtttcactacgaattccataaatccgaggt  23040400  Previous    Next  AGI:  At5g56900.1    Description:  CwfJ-like family protein / zinc finger (CCCH-type) family protein. similar to CwfJ-like family protein [Arabidopsis thaliana] (TAIR:AT1G56290.1); similar to hypothetical protein OsI_030037 [Oryza sativa (indica cultivar-group)] (GB:EAZ08805.1); similar to Os09g0364000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062997.1); contains InterPro domain Protein similar to CwfJ, C-terminal 2 (InterPro:IPR006767); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain Protein similar to CwfJ, C-terminal 1 (InterPro:IPR006768); contains InterPro domain Histidine triad-like motif; (InterPro:IPR011146) Range:  from: 23036552    to: 23039896    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g56910.1    Description:  cysteine protease inhibitor. similar to cysteine protease inhibitor [Arabidopsis thaliana] (TAIR:AT5G56920.1); contains InterPro domain Cystatin-related, plant (InterPro:IPR006525); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003243) Range:  from: 23040148    to: 23041431    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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