Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------TOE2(3)                 --------->DAG2               --------->CCA1(2)             --------->CCA1(2)        ---------->DOF2       <---------WRKY38(1)                                                      <---------ANAC58       <---------WRKY45                                                         <---------ANAC58<----       <---------WRKY12        ----------->GT1                        --------->WRKY38(1)       <----      <<<<<<<<<<WRKY62       <------ZmHOX2a(1)                 --------->HSFB2a(2)          <--------      <<<<<<<<<<WRKY40    <---------LBD16          <----------DOF2    --------->WRKY12      <--------      --------->WRKY18(1) <-----------RAV1(2)     <---------DAG2   --------->ALFIN1         --------- -DOF2<<<<<<<<<<WRKY18<---------SPL7           <-----------GT1 <---------HSFB2a(2)<---------MYB52(1)   gggtattggtcaaagagataaggctgtaccaggaagtgaaaatgcttatataccttttgaaacttctaggtgttgactgtttccgttttctgtgttcact  19064600                               <---------AHL20(1)                               --------->ARR11(3)                            <---------CCA1(2)                               <---------AHL20(2)                 <---------WRKY18(1)                               --------->AHL20(1)                --------->WRKY12         <----------  <---------YAB1             <---------AHL20(2)                  --------->WRKY38(1)      ----------- -----DAG2                   <---------AHL20(1)      <---------ANAC46      <---------ANAC58  <------- ------DOF2              --------->YAB1              <---------ANAC55(1)   <---------ANAC58  -------- -ZAT14               ----------->GT1            <-------GAMYB--------->ATHB12------->TEIL------>ZmHOX2a(1) -ZAT18      <---------DAG2<---------YAB1       <------MYB46(1)  ----------->HVH21       <----------- >ZAT18      <----------DOF2--------->YAB1      <------MYB83  <---------MYB46(3)         <-----------   ttttatgtttcttagctttttgtggagttataatattttggagctatagtgggttaagtgtgaatggttgacctattgtgtatctatgactcctgtatat  19064700                                                                             ------>ZmHOX2a(2)                                                                             ========================                                                                            <------ZmHOX2a(2)                                                                            --------->GLK1(1)                                                                            =========================                                                                            <---------GLK1(1)                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                           --------->ARR14(3)                                                                           <---------ARR11(3)                                                                           <-----------ARR10                                                                           <---------ARR14(3)                                                                           --------->GLK1(2)                                     <---------HSFB2a(1)                   --------->ARR11(3)                                     --------->ICU4                       <------ZmHOX2a(1) -----AGL15                  <---------HSFB2a(2)                   ---------->DOF2 ---->AGL15               ------->TEIL--------->ATHB12      <-----------RAV1(2)        ---------->DOF2 --ARR14(2)            --------->ANAC55(2)  ----------->HVH21     <------NtERF2 <---------ANAC58 ->ARR14(2)            <---------ANAC55(2)--------->At4g35610  <---------LBD16  <---------ANAC58   <- ------AGL2    <----------DOF2    <------ZmHOX2a(1)       <-----------HVH21<---------AGP1        <--- ------AGL3  ------->TEIL<---------CCA1(2)<---------At4g35610>>>>>>>GRF7 ----------->ARR10       <---   ggtatttgtagtatgaacttttgatatgtatctagaggaatgtttgctgacacttggttttgtcaggcggaaaggaggatctgcttgtctaaagaggcta  19064800                         ---------->DOF2                     --------->TOE2(3)         <---------GLK1(2)                                                                     <-----   ----------->GT1  --------->ANAC58                      <---------ATHB12                 --------->ALFIN1 =====HOX2a_HOX2a   ----------->GT1                     --------->WOX13(1)                 <---------AtMYB61 =====HOX2a_HOX2a   <---------ANAC55(2)               ------------>CBF       ------------>CBF ------- -----ZmHOX2a(1)    --------->ANAC58                 <-----------HVH21      <<<<<<<<<<<<<<<<<LFY ------TOE1(3) <---------HSFB2a(2)               --------->GLK1(2)         <---------At4g35610<------ ------TOE2(3) --------->HSFB2a(2)          <------ZmHOX2a(2)              --------->At4g35610<------   aggatgggttagaatttctgaaacgtaaaaagcttcaaaaaatgagatcagactctgtcaatgaaacagtaggcttcagcacaatggctagaagtggtgg  19064900                                            <--------P                                          ----------->GT1                                          <-                         <---------O2   <---------ANAC58                       <-------TEIL        <-                     <-----------TGA1   <---------ANAC46                 <---------AtLEC2         <--   <----------DOF2   <-----------HVH21  <---------ANAC58           ---------->DOF2              ----- ----MYB46(3)      <---------At4g35610  <---------ANAC55(2)       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<- -->ALFIN1         --------->At4g35610  <---------ANAC55(1)    --------->GLK1(2)        <-----------HVH21 ---AtMYB61  ------>MYB46(1)           <---------LBD16<---------ZAT6    <-------TEIL   <---------ZAT6 ---ANAC46   ------>MYB83<---------ANAC46--------->LBD16       <---------ARR11(3)------->TEIL <------   tgatgctttgagaccaacttcagcgtcatgtggaatgagattacgggtaacttctagtgatacagtatctaaagtgcatggtgcatctactgtgagaggt  19065000                                                                       ------>ZmHOX2a(1)                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                  --------->HSFB2a(1)                                                                  <---------HSFB2a(1)                                                                 <---------KAN4(2)           <------ZmHOX2a(1)                                     --------->ARR11(3)         <---------GLK1(2)     ---------->DOF2    <---------REM1(1)                <---------ARR11(3)      --------->HSFC1(1)      --------->MYB46(3) --------ANAC46         <---------ANAC58                     --------->HSFB2a(2)    ------>MYB46(1) --------ANAC58       --------->GLK1(2)------>ZmHOX2a(2)<---------HSFB2a(1)         ------>MYB83 ----NtERF2  --------->DAG2      <---------At4g35610    --------->HSFB2a(1)        ----------->RAV1(1) ---->ALFIN1---------->DOF2    <-----------RAV1(2)      --------->HSFC1(2)--------->ETT(2)   ======== --------ANAC58 --------->ALFIN1 --------->At4g35610    <---------HSFC1(2)<---------ETT(2)   ======== ---O2 <---------TOE2(3)<---------ANAC58        ------->TEIL <---------HSFB2a(2)  --------->AtMYB61 <   ggcttgatgaaggaaaaagtggagaagcttgagacagatgatctaaaatggaccgagaggcttccagaatgtcctgtctacagaccaacaaaggaggagt  19065100                                      --------->HSFC1(2)                                      <---------HSFC1(2)                                    <---------GLK1(2)         ----------->HVH21       --------->HSFB2a(2)       ------>ZmHOX2a(1)         <---------HSFB2a(2)       --------->At4g35610      <---------LBD16     ------>ZmHOX2a(2)    <---------ARR14(3)    <------ZmHOX2a(2)     <---------ARR11(3)   <---------ARR14(2)     <---------ARR14(2)   --------->ARR14(2)     --------->ARR14(3)   <---------ARR11(3)     <---------GLK1(2)   <---------ARR14(3)     --------->ARR14(2)                  <---------ARR11(3)   --------->ARR14(3)     --------->ARR11(3)      ----------->GT1   --------->ARR11(3)     <-----------ARR10<---------------AGL15  <------ZmHOX2a(1) --------->HSFB2a(2)    --------------->AGL15 ===========HOX2a_HOX2a ----------->ARR10 <-----------------AGL3 ==========HOX2a_HOX2a<---------At4g35610 <-----------------AG--------->ARR11(3) ---------TOE2(3)   <---------HSFB2a(2)   <-----------------AGL1--------->TOE2(3)   ttgaggatcctctgacttatttgcagaagattttcccagaagcttcaaaatatggtaaaacaaaaatctcaatatgcaagtagtagaattgtgcttctta  19065200                                   <------MYB46(1)                     <---------REM1(1)                   <-------GAMYB   <------MYB83                                                   ---                  <---------MYB46(3)                    ----------->GT1 --------->ANAC58       ------       <---------ANAC58          <---------WOX13(1)   ---------->DOF2   --------->ANAC58       <-----       <---------ANAC58        --------->ATHB12 <---------AHL20(2)  <---------ANAC46       <---------  <---------AtLEC2--------->MYB52(2)           --------->AHL20(2)   <---------REM1(1)     <---------CCA1(2)   attttcatggcttcataagtttgttgaagccattgattggtgttgtctataaaatggaaagaaaaatgtgatgtaggcaatatagaagacttgtatcctt  19065300                                                                       <------MYB46(1)                  --------->AHL20(2)                                   <------MYB83                  <---------AHL20(2)                           <---------ANAC46                 --------->ICU4                                <---------ANAC58 ------>YAB1 --------->At5g28300                               <---------ANAC58               <------ >ZmHOX2a(1)----------->GT1     ------->TEIL                 <-----------HVH21          ------->TEIL -----DOF2 --------->ZAT6    <---------ANAC55(2)            <-----------RAV1(1)<---------AtLEC2 ----- --GT1   <-----------GT1     --------->ANAC55(2)  <---------GLK1(2)   <---------TOE1(2)<---------CCA1(2)   tcatagacatttaactgtaattaatctcattatgtatttctatccaatctcatattctgcctctgtcgtttgtaggtatttgcaagattgtatctccttt  19065400                     <----------DOF2                     <---------ANAC46                   <---------At4g35610                 <------NtERF2                ------>NtERF2               --------->ATERF1(2)               <---------ATERF1(2)               <-----------RAV1(1)             ----------->RAV1(2)             <---------At4g35610             --------->At4g35610             <---------ZAT2                                                                         -            <-----------RAV1(1)                                                                    <-        <---------ARR14(2)                                                                       <---        --------->ARR14(2)                                                                      <----   ======================RAV                         <---------ZAT14                         --------   ------------>AtMYB77                              --------->ZAT18                        <--------   ----------->RAV1(1) --------->ALFIN1              <---------ZAT18                        <-------- --------->At4g35610<------NtERF2     --------->GLK1(1)   --------->MYB52(1)                --------- ----DOF2   ------>ZmHOX2a(1)  ---------->DOF2       --------->ZAT14                        <-------- ------>HVH21--------->ZAT2  <---------YAB1   <----------DOF2                         <---------ANAC46   gacagcaacagttcctgctggcgctgtgttgatgaaagagaaatcaaactttaagttcactaccagagtacaaccccttcgacttgctgagtgggattct  19065500  Previous    Next  AGI:  At5g46910.1    Description:  transcription factor jumonji (jmj) family protein. similar to REF6 (RELATIVE OF EARLY FLOWERING 6), transcription factor [Arabidopsis thaliana] (TAIR:AT3G48430.1); similar to hypothetical protein OsJ_007755 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24272.1); similar to hypothetical protein OsI_008397 [Oryza sativa (indica cultivar-group)] (GB:EAY87164.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63350.1); contains InterPro domain Transcription factor jumonji (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji, JmjN (InterPro:IPR003349); contains InterPro domain Transcription factor jumonji/aspar Range:  from: 19065007    to: 19068107    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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