Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->ATHB12          ----------->ARR10                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   --------->GLK1(2)  --------->ANAC58              <------ZmHOX2a(1)                                ----------->ARR10     --------->ANAC58     --------->GLK1(1)                           <------ZmHOX2a(1)        --------->At4g35610    <---------GLK1(1)                     <----------DOF2               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------At4g35610                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxx        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxx        <------ZmHOX2a(1)<---------TOE2(3)--------->AHL20(2)         <------ZmHOX2a(1)     --------->ZAT2  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->LBD16  <--- ---->GT1      --------->MYB52(1) <---------GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->At4g35610   aatttacagaggagacataagggattttaggatttagattctctataaatactcagaagcactattgggaaggagagaaatccagaggagattagctgag  15944400                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <xxxxxxxxxxxxxxxxsmallRNA(i)                <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        --------->GLK1(2) --------->GLK1(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                -       <---------GLK1(2) <---------GLK1(2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               -------     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  -------   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 -------  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                --------- ---------->DOF2<---------ANAC58  <---------ANAC58                                      <---------MYB59 xxxxxxxxxxxxxxxxsmallRNA(le3)    <---------ANAC58  <---------ANAC58                   <---------ANAC58 xxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------GLK1(2)         <---------ANAC58 -------ID1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------ANAC58            xxxxxxxxxxxxxxxxxxxxx   agacaaagagaatcgttgccttgcccagaatcgttgccttgtccgaaatcgttgccttgcccagaattgttgttttgtccgaaatcgttgcctaacacga  15944500            --------->LBD16                       <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <------NtERF2                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ------>NtERF2                    <---------ZAT14   --------->RAP2.3(3)           <---------ARR14(2)                                             -----   --------->DEAR3(1)            --------->ARR14(2)                                 xxxxxxxxxxxxxxxxx   --------->RAP2.6(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            --------->ARR14(2)xx   --------->RAP2.3(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <---------ARR14(2)--  --------->ORA47(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <------ZmHOX2a(1) ---  --------->ATERF1(1)  <------NtERF2 <---------ZAT18         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)----  --------->ERF1       --------->ATERF1(1)     <----------DOF2<xxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----  --------->RAP2.3(1) ------>NtERF2  --------->ZAT14         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)----  --------->DEAR4(2) --------->DEAR3(1)  <----------DOF2  xxxxxxxxxxxxxxxx>smallRNA(i)          ----- <---------ATERF1(1) <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------->GAMYB -------->DEAR3(1)   <---------DEAR3(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------TOE1(2) ----- -->ANAC46  --------->ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------TOE2(2)<----- -->ANAC58  --------->ANAC58   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->ZAT2      --------- -->ANAC58  --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------ZAT2  <xxxxxxxxxxxx >ZAT6 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---------->ID1<---------YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xx>smallRNA(le3)  <-----------HVH21 --------->ZAT18  <----------DOF2  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   catcgccgcctagcccgaaatcgtcgcctcgcccatttctgcactttgtctttctgcttttacgattaagtctcggctcggaggatagtctataaccccc  15944600      <---------MYB52(2)  <xxxxxxxxxxxxxxxxsmallRNA(i) --------->ANAC58                                                    ------>MYB83 --------->ANAC58                                                    ------>MYB46(1) ---->LBD16                                                        --------->DEAR3(1) xxxxxx>smallRNA(si3)                                             <---------At4g35610    --------->ATHB51 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              --------->At4g35610   <---------YAB1 ---->NtERF2                           --------->TOE2(3) <---------ARR14(2)          <---------AHL20(2) -------->HVH21                        --------->TOE1(3) --------->ARR14(2)          --------->AHL20(2) -->NtERF2                            ----------->GT1   --------->ZAT2     --------->ARR11(3) ---->ANAC46                         <---------TOE2(3)  --------->At4g35610<---------ARR11(3) ----->LBD16                         <---------TOE1(3)  <---------ZAT2    <---------GLK1(2)<---------YAB1 ---->ANAC58                         <---------YAB1     <---------At4g35610--------->GLK1(2)<-------- ---->ANAC58                  <----------DOF2<---------AHL20(2)--------->WRKY12----------->GT1   <--- ----LBD16                 <---------ARR11(3)--------->YAB1   <---------MYB52(1) <---------CCA1(2) >MYB46(3)    ---------->ID1 ------>ZmHOX2a(2) ---------->DOF2<-----------HVH21<---------ANAC46  <--- xxxxxxxxxxxsmallRNA(fl3)  --------->ARR11(3)--------->AHL20(2)--------->WRKY38(1)   <---------YAB1   gcgacgaaactaacttgttgtaatctctcgatctttgttatcgttaataaaaagaaccagctccgttcacctcccaaaatctcgtatattattattgttg  15944700                                                                                               <-----                                                                                               ------                                    ----------->RAV1(1)                                       <------                                 --------->HSFB2a(2)                                        <--------          --------->ANAC46       <---------HSFB2a(2)                                        ---------  --------->LBD16         <---------ANAC58                                                 <---------ATHB12 ---RAV1(1)               <---------ANAC58      --------->At4g35610                    --------->WRKY18(1) ------ANAC58         <---------ANAC58          <---------At4g35610                    ------------>CBF ------ANAC58         <---------ANAC58<---------ALFIN1 --------->TOE2(3)  <-----------GT1--------->WOX13(1)   catccccagtacaaacaatgtttttcttgcttcttctgcaacacatagtctgctaaaccttggttttttggacacattacccttctctggtcaatcatca  15944800   ------>MYB83   ------>MYB46(1)                                                       --------->HSFC1(2)  <---------ALFIN1                          <---------ANAC58             --------->HSFB2a(1)  <------ --------->MYB46(3)             <---------ANAC58                         <---------HSFC1(2)<---------ARR11(3) ----ICU4             --------->WOX13(1)    <---------ANAC58             <---------HSFB2a(1) ------>ZmHOX2a(2) --->ZAT6         --------->WOX13(1)        <---------ANAC46       <----------ID1          --------->ARR11(3) ---YAB1        ------------>CBF<---------ANAC58                --------->DAG2      <---------TOE1(3) -ICU4     --------->DAG2       --------->TOE2(3)  <-------TEIL---------->DOF2      <---------TOE2(3) >YAB1    ---------->DOF2--------->YAB1 <------------CBF   --------->ANAC46       ---------->DOF2   ctacccacttcaaaaagtttcaatctatcaaattccttgatgcattgcttacattcgttacacaaaaaagcgagaaatttctcgtaaaggtttgatcttt  15944900                                                                                               ------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                          -----------                                                                                          -----------                                                                                       --------->TGA2(2)                                                                                      <-----------TGA1                                                                                      <---------RAP2.6(3)                                                                                     --------->bZIP60(1)                                                                                     <---------TGA2(1)                                                                                     <---------bZIP60(1)                                                                                     <---------bZIP60(2)                                                                                     --------->bZIP60(2)                                                                                     --------->ANAC58                                                                                     <---------ANAC46                                                                                     --------->TGA2(1)                                                                                     <---------TGA1a                                                                                     >>>>>>>>>>HY5                                                                                     --------->ANAC55(2)                                                                                     --------->ANAC58                                                                                     <---------ANAC55(2)                                                                                     --------->TGA1a                                                                                     <---------O2                                                                                     --------->O2                                                                                    ----------->STF1                                                                                    <-----------STF1                                                                                  ----------->TGA1                                                                                  ----------->HVH21                                                                                 <---------WOX13(1)                                                                                <---------ANAC46                                                                              --------->WRKY38(1)                                                             --------->ARR14(2) <---------ANAC58      <------NtERF2                                      <---------LBD16   <---------ANAC58  --------    --------->ETT(1)           <---------ANAC58       <------------CBF     <---------ANAC58 ---------    <---------ANAC46           <---------ANAC58      --------->DAG2        <---------ANAC46<---------TGA2(2) ----DOF2               <----------DOF2     <---------KAN4(2)<---------ARR14(2) <---------ANAC58   agtttgtcggagaagtttgataagtgcttttaggcgttttgttgagaattttcaaaaattggggatttgactaaaatgcgttgagtgacgtcatgacgtg  15945000 ----->HVH21 --ANAC55(1) ->ANAC55(2) ->TGA2(1) --bZIP60(1) --ANAC58 ->TGA1a                                                                             <---------ARR14(2) --TGA1a                                                                             --------->MYB52(1) ->bZIP60(1)                                                                         --------->ARR14(2) --bZIP60(2)                                                                         ------>MYB83 --ANAC55(2)                                                                         ------>MYB46(1) --ANAC58                                                                          --------->DEAR3(1) --ANAC46                                                                          <---------MYB52(2) --O2                                                                      <---------ICU4 >TGA1                            ------------>CBF              --------->GLK1(2) --------->ANAC46 >HVH21                     <---------ANAC58                   <---------GLK1(2)  --------->ANAC58 ->O2                       <---------ANAC46               ---------->DOF2--------->ICU4         <--- -->STF1                    <---------ANAC58     <-----------GT1--------->ARR11(3)--------->ANAC58  -   actagtcaagagcctcggtctgaaacagtggcttaatccaattttcaaaattttcgatatgaaaagaatcttggtcttaattacaccgaaccggttttga  15945100                                                                                 <------NtERF2      <                                                                              --------->ATERF1(1)   <                                                                         --------->TGA1a          ---                                                                         <---------O2             ---                                                                         --------->O2             ---                                                  --------->AHL20(2)     ============================                                                  <---------AHL20(2)     <---------TGA1a        -----                                                 --------->AHL20(2)    <---------ALFIN1         <----                                         <---------MYB52(1)          <---------ALFIN1      ------>ZmHOX2a(1) ------GLK1(1)                         <---------DEAR3(1)            --------->AtMYB61    --------->TOE1(3) -------->TOE2(3)           --------->YAB1    <---------AHL20(2)    --------->MYB46(3)    --------->TOE2(3)   aatctcaatccaagttaaaccaaaatgaaatcaaaactgggccggtttttatttaatttcatcaagtcgaaccacacgggggaggcacttatcctaaacc  15945200                                         <------MYB46(1)                                         <------MYB83                                         ----------->GT1                    >>>>>>>>>ARR2       --------->MYB111(1)                  <---------TOE1(3)     --------->MYB111(2)                      ------>MYB46(1)         <------ZmHOX2a(1)              --------->MYB46(2)                       ------>MYB83       <---------TOE2(3)               <--------P                              <---------MYB59 -----------------AG>>>>>>>>>ARR1      <---------MYB55(1)                     --------->ANAC58 -----------------AGL1<---------MYB46(3)<---------MYB46(3)                    --------->ANAC46 ------>MYB52(1)  <---------YAB1      <-------GAMYB                       --------->AtMYB61         < --->MYB46(1)     <---------TOE2(3)  <---------MYB46(3)                <-----------GT1            <-- --->MYB83  --------->DAG2           --------->ATHB12         <<<<<<<<<<MYB80 --------->ANAC58------- =====================bZIP_DOF    <---------ANAC58       <----------DOF2  --------->YAB1      ------- ---->AtMYB61----------->GT1      <---------ANAC58   --------->WRKY38(1)-------->P      --------->TOE2(3) -----MYB59---------->DOF2   <----------DOF2         --------->WRKY12  --------->WOX13(1)    --------   aaaccggtttaggaaaagttaagattgttgactttgacttggttggtaaaccgagttgacttttggtttgaatcaaccatacccaacttatctcaacgta  15945300  Previous    Next  AGI:  At5g39770.1    Description:  repair endonuclease family protein. similar to ATMUS81, endonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT4G30870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40700.1); contains InterPro domain DNA repair nuclease, XPF-type/Helicase; (InterPro:IPR006166); contains InterPro domain Restriction endonuclease, type II-like, core; (InterPro:IPR011335) Range:  from: 15936469    to: 15944777    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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