Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------ZAT2                 --------->ZAT2                 --------->At4g35610           ------>ZmHOX2a(2)          <------ZmHOX2a(2)         --------->AGP1         <---------ARR14(2)         --------->ARR14(2)                                                                      <---         <---------ARR14(3)                                                                 <--------         --------->ARR11(3)                                                                 ---------         --------->ARR14(3)                                                              <---------ZAT18        <---------GLK1(1)                                                                --------->ZAT18        --------->GLK1(1)                           --------->TOE2(3)                  --------->ZAT2    --------->ALFIN1                                --------->YAB1                     --------->At4g35610 -->MYB83<---------ARR11(3)                        <<<<<<<<<ARR2                       <---------ZAT2 -->MYB46(1)     <---------At4g35610          --------->YAB1                    ===================== ---->P----------->ARR10          --------->ANAC46 <<<<<<<<<ARR1       ------->TEIL    <---------At4g35610 -----ALFIN1     ----------->RAV1(2)    ------->GAMYB            --------->DAG2 ---------->DOF2  ----   acccgagtggagatcttgcagctgaacttgaaatagacacaactcccatcacaatcttaaggctcaaaaattgaatctttctcaaagctagctcacttgt  8159800    --------->At4g35610                                  <---------ANAC58                  ------->TEIL   --------->ANAC58                           <-------GAMYB                            ------>ZmHOX2a(2)   --------->ANAC58                          --------->MYB111(2)                      <---------At4g35610 ------At4g35610 <---------------AGL15       <---------MYB46(3)                     --------->ZAT14 -TGA1a       <---------ARR11(3)            <--------P   <---------ANAC58           <---------ZAT14 >TGA1a       --------->ARR11(3)         <---------TOE2(2)                     <---------ZAT14    --- =bZIP_DOF   <---------CCA1(2)           <---------TOE1(2)                     --------->ZAT14    <-- ----->At4g35610 --------------->AGL15  <-----------RAV1(2)           <-----------GT1 --------->At4g35610   gctgcaagcagaaacatatctcatataagtataaaaaatgtctcaggttgttgacaataacttgcatcaattttactacagaacactgatctgaatctaa  8159900            <------------MYB.PH3(2)            <---------MYB59            <---------MYB52(2)          <-----------GT1       --------->CCA1(2)      --------->ARR14(2)      <---------ARR11(3)                                                          <---------ICU4      <---------ARR14(2)                                                      <-------TEIL  <---------At4g35610<---------------AGL15<---------ARR14(2)          <---------ATHB12 ------>TOE2(3)     --------->ZAT6       <------ZmHOX2a(1)          --------->WOX13(1)            --- --------DOF2 --------->MYB52(1)--------->ZAT6         --------->ATHB12--------->YAB1          ------   ctttagcagatataactaacttactctaatatgaacactgagaggaaccaaaatgaaagattgaaactttcaatcaaagattcaacatttcaacatgaaa  8160000                                                                                           --------->MYB46(3)                                                                                         ----------->RAV1(1)                                                                                       --------->At4g35610                                                                                      --------->ANAC58                   --------->LBD16                                                    --------->ANAC58                  <---------HSFB2a(2)                                             <---------ANAC58                  --------->HSFB2a(2)            --------->MYB52(1)               <---------ANAC46                 ------>ZmHOX2a(2)        <----------DOF2                      <----------DOF2      --------->AHL20(2)              --------->GLK1(2)                     <---------ARR11(3) -------->GT1    <---------LBD16     <---------GLK1(2)                      --------->ARR11(3)     -- ->TEIL         <------ZmHOX2a(2)   <---------At4g35610            ---------->DOF2<---------ANAC58<--   ctgaaaaatttaagagcgatcgggaaaacccaaaattcagattcctttgaataacagagaattcaaatgcaaagtcgaaatctttcgtgagcaacaactg  8160100                                    <---------ICU4                                    --------->YAB1                                   <---------ATHB12                               ------>ZmHOX2a(2)                              --------->CCA1(2)                            --------------------->WRI1                              <------ZmHOX2a(2)                         ------->TEIL                             --------->AGP1                           <---------SPL7               <-                             <---------ARR11(3)                      <---------ANAC58           -----                             <---------AGP1                          <---------ANAC46    --------->LBD16  --------->AHL20(2)         <-----------ARR10                 <---------DAG2           <---------ANAC46  <---------AHL20(2)         --------->ARR11(3)                <----------DOF2         <---------LBD16 ------->YAB1            ---------->DOF2         <---------TOE1(3)   <---------ANAC58 <---------ANAC46 -------YAB1          --------->ANAC46           <---------TOE2(3)  --------------->AtSPL8<------NtERF2   atcataaattgaatgaaattttacacagaaagatctaatcaagacgaagttaatgttcgaaatcgcttttggcgtacctttgtaagtatcgcggagagaa  8160200                          <---------TOE1(2)                   <---------HSFB2a(1)                   <---------HSFC1(2)                   --------->HSFB2a(1)                   --------->HSFC1(2)                  <---------ARR14(2)                  <-----------ARR10                  --------->ARR11(3)                  --------->ARR14(2)              ------->TEIL                  <---------ARR11(3)           --------->ANAC58                              --------                  --------->GLK1(2)            --------->ANAC46                <------------CBF        <---------HSFB2a(2)     *TSS           --------->ANAC58    ----------->GT1  <---------ANAC46 --------AHL20(2)<---------ARR14(1)  --------->GLK1(2)<---------AHL20(2)   --------->YAB1    -------- ---->GLK1(2)    <---------GLK1(2)  <---------GLK1(2) --------->AHL20(2)  --------->AHL20(2) --------   tttttttgttcgagcaagagaatcttcgttcgattttagattctggttcacgaattttaaatagaagtagagaaaaataaaaattggagtggaatacgaa  8160300                                                                    <---------HSFB2a(2)                                                                    --------->HSFB2a(2)                                                                    ------>ZmHOX2a(1)                  --------->ANAC58                                 <---------LBD16                  <---------ANAC55(2)                     <---------ANAC46                  --------->ANAC46                       <------NtERF2                  --------->ANAC55(2)                  --------->bZIP60(1)       ------------>CBF          --------->ETT(2)      <---------bZIP60(1)     ---------->ID1     <---------ATHB51               <---------bZIP60(2)                        ---   --------->ALFIN1--------->TOE2(3)         <-----------GT1 --------->ARR14(2)                   <--   <-----------RAV1(1)  <---------AHL20(2)   --------->YAB1  <---------ARR14(2)                   --- ->ANAC46         ----------->GT1--------->ZAT18    ----------->HVH21   --------->GLK1(2)         <-- ->ANAC58         --------->ANAC58        --------->YAB1------>NtERF2  <---------GLK1(2)   ---------- ->ANAC58  <---------ATHB12      <---------ZAT14   <-----------HVH21--------->LBD16     --------->LBD16   aatatgtgtcgcaatgaactacgtaaattatggtgtccacagattaataacaatgtgacgccgtattttcctggaatctgtttataaacccccaaaagaa  8160400             <-----------GT1           <---------AHL20(2)     <---------ATHB12                                                           --------->YAB1   --------->WOX13(1)                            -------->P   <---------YAB1  ------>MYB46(1) <---------YAB1           <---------STY1(2)    --------->MYB46(3)     ------>ZmHOX2a(2) ------>AHL20(1)          --------->STY1(2)    <---------MYB111(1)    ==============================HOX2a_HOX2a -------AHL20(1)   <----------DOF2      --------->ARR14(2)<---------ANAC58    ------>MYB83   ------>ZmHOX2a(1) ------>AHL20(2)   <---------DAG2       <---------ARR14(2)<---------ANAC46  <---------MYB59 --------- -------AHL20(2)  <---------DAG2     <---------ANAC55(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) >DOF2    --------->AHL20(2)         --------->ANAC55(2)  <---------ANAC58------->TEIL <-------TEIL--   tttattaatcaatttaaaccccttttctagctagacaatacgtttccgaactaccctcttccttgttattgatctgtacctagcataagtgcatcctcat  8160500                                                                --------->ALFIN1                                                              <---------O2                                                              <---------TGA1a                                       <---------YAB1         ===================bZIP_DOF                                      <---------AHL20(2)      --------->TGA1a                                  <---------ZAT6              --------->O2 <---------ALFIN1        --------->TOE1(3)            ==================bZIP_DOF   <---------CCA1(2) >TOE2(3)                --------->TOE2(3)            <----------DOF2 <----------DOF2 ------->ANAC46         <---------ICU4--------->AHL20(2)  <-----------HVH21     <-------TEIL    -----   cccacaactctataagcgttttttaaacattaactagtattaaaattgaagacactcttttgtcatgtgtgtctttaaaacattcgtatcacaaaaaata  8160600                                           <XXXXXXXXXXXXXXXXXXXXMIR413                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  --------->YAB1xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                --------->AHL20(2) --------->MYB52(1)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->TOE2(3)   <---------TOE2(3)        --------->ZAT6       ----------->GT1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------------->AGL15       <---------TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ---------->DOF2<---------------AGL15      <-----------GT1 ---------->DOF2   ----------->GT1          <---------YAB1  <---------ANAC58  <- ---->YAB1     --------->CCA1(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <---------ANAC58<---   agaatttttaacattagatataataaaagttaagaaaaaacagagtgaataagagaaactatctattttgaaagacatattttgcttatttgagacattt  8160700  Previous    Next  AGI:  At5g24120.1    Description:  SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69365.1); contains InterPro domain RNA polymerase sigma-70 factor; (InterPro:IPR000943); contains InterPro domain RNA polymerase sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA polymerase sigma-70; (InterPro:IPR014284); contains Range:  from: 8157554    to: 8160232    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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