Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <---------ICU4                                                                                   --------->YAB1                                                                                  --------->ICU4                                                                                  <---------YAB1                                                                                 <---------AHL20(2)                                                                                 --------->AHL20(2)                                                                                 <---------AHL20(1)                                                                                --------->YAB1                                                                               <---------YAB1  ------ --------->ANAC46                                         --------->ANAC46   <---------ICU4 --------- --------ALFIN1                                         --------->ZAT6      --------->ICU4 --------->ICU4   tccaccgaaaatcgtattgtgaacataagtgttttttagtttttttgtctagttgattacactacatatcaattcatacttattataattacactgatta  5666500                                         <-------TEIL                                     <---------YAB1                                   <-----------GT1                               <---------AHL20(1)            ----------->GT1       <---------AtLEC2        --------->AHL20(2)        <---------ARR11(3) --------->AHL20(2)            --------->AHL20(1)        --------->ARR11(3) <---------AHL20(2)     --------->ARR14(2)              <---------CCA1(2) --->AHL20(2) --------->YAB1   <---------ARR11(3)      ------->TEIL >YAB1<-------TEIL      <---------ARR14(2)          ----------->GT1          --------->WOX13(1)   tatataaatgcatgaatgaaaactcgaattcgatatattacgattcgtcaaaaaatgtatatctagtgaattctggtatcaattagaggtctgaatttgt  5666600                                                  <-----------------AGL3                                                  ----------------->AGL3                                                  <-----------------AGL2                       ------                          <---------AHL20(2)    --------->ARR14(2)  ----------->GT1            <-----                          --------->AHL20(2)    <---------ARR14(2) --------->DAG2             <------                   -------->P                  ------>MYB83       ---------->DOF2           <--------                   ------>MYB46(1)             ------>MYB46(1)------>ZmHOX2a(2)  <---------ARR11(3)                   ------>MYB83     <---------DAG2----------------->AGL2         <---------AHL20(1)  --------->ARR11(3) <---------MYB59<----------DOF2         <---------AGP1       --------->AHL20(1)<-  <---------ARR11(3) --------->TOE2(3)       <---------MYB59------->TEIL   >>>>>>>>>MYB2<----------DOF2   tcaatatcgtccacaattccctacctaaaaaattagagctttttggaccaaatccaaaaatggatctaaaaagtgaaaaccaaaatattcctttaagaat  5666700                                                   <---------ARR14(2)                                              --------->ALFIN1                                             ------->PIF5                                             <-------MYC4                                             <-------PIF5                                             ------->MYC4                                             <-------PIF4                                             ------->PIF4                                             ------->MYC2                                             <-------MYC2                                             ------->MYC3                                             <-------MYC3                                            <---------O2                                            <---------TGA1a               ------>MYB46(1)              --------->O2               --------->MYB52(1)           --------->TGA1a  <---------ANAC58       <-------TEIL--------->LBD16          --------->ANAC55(2)     <---------GLK1(2)                      <---------ANAC46 <---------ANAC58     --------->ARR14(2)                     <---------ANAC55(2)     --------->ARR11(1)                    ------------>OsbHLH66     <---------ARR14(2)  <-----------GT1  <------------OsbHLH66 --->GLK1(2)   ------>MYB83            --------->ANAC46      <---------ANAC46 ------ARR10 <---------MYB59           --------->ANAC58     ------>NtERF2 ---GLK1(2)  --------->AtMYB61         --------->ANAC58 --------->ANAC46 -TOE2(3)   --------->MYB46(3) --------->ARR14(2)  --------->ARR14(2) --------REM1(2) <---------LBD16      <---------LBD16  --------->ZAT18                      ---------   ctacacagattcgaaccaaaccggattaaaccgaatagtctacggcacgtgtggaaacgcgctgcgtttcaaaaacatttggggtatttttgtaattttt  5666800                                     >>>>>>>>>TBF1                                 =====================HOX2a_HOX2a                                 <------ZmHOX2a(1)                               --------->LBD16 <------ZmHOX2a(2)     ------>MYB46(1)             <---                      <------ZmHOX2a(1)       <---------ARR14(2)   --------->AtMYB61             <---           <-----------RAV1(2)<---------LBD16 --------->ARR11(3)   <---------MYB111(1)           ----          ===================HOX2a_HOX2a>>>>>>>>>TBF1   ------->TEIL ------>MYB83                ----          <------ZmHOX2a(2)   <-----------RAV1(2)<---------DDF1    <---------MYB46(2)            <---          ==============================HOX2a_HOX2a   *TSS         --------->MYB46(3)           -----        <------ZmHOX2a(1)    --------->TOE1(2)--------->ARR14(2)  --------->ANAC58    ------>ZmHOX2a(1) --------->ICU4       ================================HOX2a_HOX2a --------->ANAC46   --------->TOE1(2) >ICU4<---------TOE2(3)   --------->GLK1(1)   <---------ARR11(3)  --------->ANAC58   --------->TOE2(2)   gtaatttttaggatcagggttttaggagaaacccaggaagaagaagaagatcgacatggacttagaacaccaaaccatggagacgttcctgcgatgggca  5666900                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                -----                                                                                              -------                                                                                              <------NtERF2                                                                                              <------                                                                                             ------>NtERF2                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                            <--------                                                                                           <---------LBD16                                                                                           <---------MYB52(1)                                                                                           <------NtERF2                                                                                           --------->ATERF1(1)                                                                                          <---------DEAR4(2)                                                                                          <---------RAP2.3(1)                                                                                          <---------ERF1                                                                                          <---------ATERF1(1)                                                                                          ------>NtERF2                                                                                         <---------ATERF1(2)                                                                                         --------->DEAR3(1)                                                                                         <---------DEAR3(1)                                                                                         <---------RAP2.3(2)                                                                                         --------->ATERF1(2)                                                                                        --------->RAP2.3(1)                                                                                        --------->ATERF1(1)                                                                                        <------NtERF2                                                                                       <---------RAP2.3(1)                                                                                       <---------RRTF1(1)                                                                                       ------>NtERF2                                                                                       <---------ATERF1(1)                                                                                      ===============                                                                                      <---------TGA1a    <---------WOX13(1)          --------->HSFB2a(2)<---------ANAC46                ----------->TGA1 ------At4g35610                <---------HSFB2a(2)<---------ANAC58                ----------->HVH21 ---NtERF2               <---------GLK1(2)         <---------ANAC58 <---------ANAC58  =============== ----->At4g35610 --------->GLK1(2)            <---------ANAC58      <---------ANAC58 --------->SPL7 ----->ZAT2     <---------ARR14(2)            <---------ANAC46  <----------DOF2  ----------->RAV1(2) ------ZAT2     <---------GLK1(2)             <---------ANAC58  ================================bZIP_DOF ------>RAV1(1) --------->ARR14(2)           <-------TEIL --------->KAN4(2)------>NtERF2<---------LBD16   gcagagattggcatttcagattctattgattcttctcgatttcgcgattcgtgtcttggacattctctttccgtctccgacttccctgacgccggcgggt  5667000 -------ANAC58 -------ANAC58 -------ANAC46 ------MYB46(3) ----TEIL ---->ALFIN1 -->ATERF1(1) -GAMYB --MYB46(3)                                                               <------ZmHOX2a(1) ->MYB55(2)                                                            <-----------RAV1(2)        --- --ATERF1(1)                                                           --------->YAB1  --------->At4g35610 --DEAR3(1)                                                           <---------ATHB12 --------->ZAT2 -ANAC46                                          <---------YAB1    --------->WOX13(1) <---------ZAT2 =============================bZIP_DOF  --------->ARR11(3)   <---------WOX13(1)        <---------At4g35610 =MYC_MYB          <----------DOF2      --------->GLK1(2)  --------->ATHB12     --------->ALFIN1  <--   gcgtggaattgaattcgaactctttcatttctaaatccctaaaatctgtcttctcattgctcgattgatgcaatcaggagaggtttgggagctgctcgtg  5667100                                                                        <---------AGP1                                                                        <---------ARR11(3)                                                               <---------WOX13(1)                                                             --------->ATHB12                                                             --------->ATHB51                                                             <---------ICU4                                                            <---------ATHB51                                                            --------->ICU4                                                            <---------YAB1------>ZmHOX2a(2)        ----------->GT1                                   --------->TOE2(3)     ---------->DOF2                                   --------->ARR14(2)<------ZmHOX2a(2)        ---   --------->ANAC58                ---------->DOF2     <---------ARR14(2)--------->CCA1(2)        <--   --------->ANAC58             --------->LBD16        --------->GLK1(2)--------->ARR11(3)   <------- ------>At4g35610             <---------LBD16         <---------GLK1(2) --------->AGP1      <-------GAMYB -------At4g35610      ---------->DOF2            <---------ZAT14   ---------->DOF2        ----------   agctcaagaaaggagaattggttttgaaagtccccagaaaagccttgatgactacagaatccataattgctaaagatctaaaattgagcgatgctgttaa  5667200                                                                                          --------->TOE1(3)                           --------->ZAT18                                                --------->TOE2(3)                        <---------ZAT2                                            --------->TOE1(3) ------>YAB1            --------->At4g35610                                       --------->TOE2(3) -------ICU4          <-----------RAV1(2)----------->HVH21                      --------->ARR11(3) --MYB52(1)<----------DOF2 <---------ZAT18                                      <---------ARR11(3) ->GT1  <-----------GT1 <---------At4g35610         ------->TEIL                --------->GLK1(2) ---   tcttcacaattcactttcttcgactcaggtgctctctatttctctgaccatttgaatctgttctgtttttgtttctgagaaaaatcttaaaacctcagaa  5667300                            <---------YAB1                   <---------ANAC46             <---------ARR14(2)                                                                     -             <---------GLK1(2)                                                                     <-             --------->ARR14(2)                                                            --------->O2 -------->GT1--------->ARR11(3)                             <----------DOF2                <---------O2   ttgttgaaatttgcagatactgagtgtatgcttattgtatgaaatgagcaaggagaagaagtctttttggtatccatacttgttccatatacctcgtgac  5667400  Previous    Next  AGI:  At5g17240.1    Description:  SDG40 (SET DOMAIN GROUP 40). Identical to Protein SET DOMAIN GROUP 40 (SDG40) [Arabidopsis Thaliana] (GB:Q6NQJ8;GB:Q9FFI7); similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G14260.3); similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G14260.2); similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G14260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22209.1); contains InterPro domain SET; (InterPro:IPR001214) Range:  from: 5666854    to: 5668909    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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