Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              --------->ANAC58            --------->ANAC58           <-------TEIL           --------->SPL7                                                           ------>MYB83         --------->TOE1(2)                                                          ------>MYB46(1)       <---------------AtSPL8                                                --------->ANAC58       --------------->AtSPL3                           --------->AtLEC2     --------->ANAC58     ---------->DOF2                             <---------ARR11(3)      --------->HSFB2a(2) <----------ID1                                  --------->ARR11(3)      <---------HSFB2a(2)      --- -------->DOF2  <----------DOF2           ------>ZmHOX2a(1)        ---------->DOF2 ----------->RAV1(1)   ggaaagacaaaggtacgactttggagacgatttcgatactgttcctcagaagttctccatgtaaacagcgaaagtcgagaagcaccaacaaaacttggct  4600600                 --------->GLK1(2)                 ------->TEIL                 --------->ARR14(2)                 <---------ARR14(2)            <---------ZAT6            <---------ANAC46                                <<<<<<<<<<MYB80            ----------->GT1         <---------YAB1         <------MYB83 <-------TEIL       ------->GAMYB          <-----------GT1              <---------MYB46(3)       --------->TOE2(3)   ----------->GT1 <----------DOF2 <------MYB46(1)            <---------YAB1 ------->DOF2   <---------CCA1(2)<----------DOF2       <-----------RAV1(1)         ---------->ID1   caaagacaaccgtagtgtgaatcttgagaatgttacttttgatttctttgttcatttttgttggtttaaaaagtttcatatttttgtcacaattgccaac  4600700                                                                    <-------MYC3                                                                    ------->MYC3                                                                    <-------MYC2                                                                    ------->MYC2                                                                   <---------ANAC58                                                                   <---------ANAC58                                        <----------DOF2            <---------ANAC46                                    <-----------GT1              <---------ANAC46         <---------ANAC55(2)                                   <-----------GT1               <---------ANAC58         --------->ANAC58                             <----------DOF2                     <---------ANAC58         --------->ANAC46                         <---------CCA1(2)              <-----------GT1       <---------ANAC58                  ------->TEIL <---------AHL20(2)  --------->AHL20(2)         <---------ANAC58            --------->ICU4--------->ARR11(3)       <---------AHL20(2)   ------->TEIL      --------->ANAC58            <---------YAB1<---------ARR11(1)       <---------AHL20(1)  <---------CCA1(2)  --------->ANAC55(2)   aagtagagaagaccattatggaccctcaaatcttttatttcccttttacttaaaaaattttccccttgcgcgtgtatctctcgtgctaacttacgcgagc  4600800                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                          --------->GLK1(1)                                     <---------ANAC46                     <---------GLK1(1)                                    <------NtERF2                  <---------MYB52(1)                                   <-----------HVH21             <---------ANAC46                                   ------>NtERF2                 <---------ANAC58                  --                                  <---------DEAR3(1)             <---------ANAC58                 <--                                  <---------ANAC46          <---------ANAC58     <---------WOX13(1)<-                                  --------->DEAR3(1)        <---------ANAC46  <---------YAB1    <----    --------->ATHB12            ------->GAMYB               <---------ANAC58<---------At4g35610------   <---------YAB1            --------->MYB52(1)         <---------At5g28300--------->GLK1(2)   <----- <-----------GT1   <---------HSFB2a(2)                 <-----------GT1<---------LBD16          <-----   gttttatcatttgcaagggttagagaagtctcaacggcgtcgtatcaaactcgtttttaactgcgtgtcgtttggggaatctgatagactccttgttgtg  4600900                                      <---------GLK1(2)                                      --------->ARR11(3)                                      <---------ARR11(3)                                    ----------->ARR10                                    <---------TOE2(2) ------->ZAT18                   <---------O2 -------ANAC46                   <---------ANAC46                                                ---- --------ZAT18                   --------->O2                          <----------TaMYB80        <--- -----MYB46(3)                  ------>NtERF2                          --------->HSFB2a(1)    *TSS --->ALFIN1                    <---------ALFIN1  <----------DOF2      <-----------ARR10     --------- ------RAV1(1)              --------->ANAC46  <-----------GT1    <-----------HVH21 <---------ANAC58 ----AtMYB61             ---------->CDC5  <---------YAB1        <-----------RAV1(1)<---------ANAC58 <   gtgggctagtttcaggcccattctcgctaagcgccacgtagatttttatttctttactcattttttatgtcgcatcttccccatttcgttttcaacctga  4601000                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                      --------->DEAR3(1)                                                                                     <------NtERF2                                                                                     <---------LBD16                                                                                     --------->ATERF1(1)                                                                                    ------>NtERF2  <-                                                                                    <---------ATERF1(1)                                                                                   --------->DEAR3(1)                                                                                   <---------DEAR3(1)                                                                                 <-----------HVH21 <-                                               <----------ID1                 --------->GLK1(2)    --                                               --------->ANAC46               <-----------ARR10<-----                                    --------->GLK1(2)     --------->MYB52(1)  --------->ARR14(2) <---                                --------->YAB1 --------->ANAC58          ------>ZmHOX2a(1)  <--------                              --------->AHL20(2)   ---------->DOF2      --------->TOE2(3)   --------- ----->GLK1(1)            --------->YAB1       --------->ANAC58      <---------ARR11(3)    <---------GLK1(2) ------GLK1(1)           <---------ATHB12   <---------ARR14(2)       --------->ARR14(2) <------NtERF2 -->RAV1(2)          ------>ZmHOX2a(1)      ------------------------>ANAC81  <---------GLK1(2)<------ -----------GT1     --------->TOE2(3)       --------->ARR14(2)       <---------ARR14(2)--------->LBD16   tttctccatttccctctcttatcctcaatgaaaaaaataatctgagaaaacgcaaaagaagaacggagcaaaatcctcagaatcgtcgccggagaatctt  4601100 >ARR14(2) -ARR11(3) >ARR11(3) -ARR14(2) --------ANAC58 --------ANAC58 ------->ANAC55(2)                                                       <---------ANAC58 -----DOF2                                                               <---------ANAC58 --------GT1                   <---------ICU4                     --------->ANAC58 ---ARR10                     <---------YAB1                      --------->ANAC58                 <- >GLK1(2)                   --------->YAB1                        --------->ANAC46         <---------MYB52(1) ---ICU4     --------->YAB1----------->GT1                 <-----------GT1 <---------CCA1(2)  <------   tacgtttcgacataatcggaattttggaattgataattccgatggaaggggttatcacatgtttccatacgaaatgcgtctctcttccaattcgttcttt  4601200                                        <---------AHL20(1)                                         <-                                        --------->AHL20(1)                                  <--------                                        <---------AHL20(2)                                  <--------                                        --------->AHL20(2)     <---------DEAR3(2)           ---------                                 ====================================HOX2a_HOX2a         <---------ANAC58                                 <------ZmHOX2a(1)            ------>ZmHOX2a(2)     <---------ANAC58                                 ===================================HOX2a_HOX2a     <---------ANAC58                                 ======================HOX2a_HOX2a            <---------ANAC58    <--                             <---------MYB46(3)              <------ZmHOX2a(2)--------------------->WRI1                            --------->ALFIN1    ------>ZmHOX2a(2)            --------->HSFC1(2)   ---  <----------DOF2        <---------DEAR3(1)   <---------ARR11(3)             <---------HSFC1(2)   <-- --------ALFIN1         ===============================HOX2a_HOX2a   <---------At4g35610 <---------ANAC58 ----DOF2               ------>ZmHOX2a(1)     --------->ARR11(3)  <-------TEIL<---------ANAC58  -----   cccactttctagggtttcttcacttcctcggtggaggaacaataaattgatctcttcatcgcgatcggttcatctaagaagcttgtgcgtttcgagctca  4601300  <----------DOF2 --------RVE1(1)                                                                  <---------ARR14(2) -At4g35610                                                                       --------->ARR14(2) -ZAT2    <---------ANAC58                                                       <------ZmHOX2a(1) >ZAT2    <---------ANAC58                                                     <---------TOE1(2) -------GLK1(2)<---------MYB46(3)                                             --------->LBD16 ------>ARR14(2)       ---------->DOF2                               <---------At4g35610 -------ARR14(2)  <-------TEIL                                       --------->At4g35610 ------>ARR10<---------------------WRI1  <------NtERF2             <------ZmHOX2a(1)           <-----   gatactttagtcgcgagcggttcaccaaaggaagacgagaggcagagcaaagtatcgagcaagaaggaaggagatgactccgaggatttgaagttttgga  4601400                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                         ----------->GT1                  --------->At4g35610                   <----                    --------->AtLEC2                <---------YAB1                              <----                ------>NtERF2                       --------->ICU4                              -----               <---------ALFIN1                <---------ZAT2                                  <-----          <---------ANAC58                     <---------At4g35610                  <---------ANAC46          <---------ANAC58   --------->KAN4(2) --------->At4g35610                 <---------At4g35610 ----AtLEC2<--------P <---------AtLEC2         --------->ZAT2 --------->YAB1   <-----------RAV1(1)---   tggataagaatgggttgccaccttgcaaggttattctcaaggagagaccagctcatgatcagaagcataaacctatacattatgttgctgctagtgagga  4601500  Previous    Next  AGI:  At5g14250.1    Description:  COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13). Identical to COP9 signalosome complex subunit 3 (CSN3) [Arabidopsis Thaliana] (GB:Q8W575;GB:Q93VY1;GB:Q9LYA4); similar to 26S proteasome regulatory subunit S3, putative (RPN3) [Arabidopsis thaliana] (TAIR:AT1G75990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14599.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Proteasome component region PCI (InterPro:IPR000717) Range:  from: 4597881    to: 4600764    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g14260.1    Description:  SET domain-containing protein. similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G07670.1); similar to hypothetical protein OsI_036654 [Oryza sativa (indica cultivar-group)] (GB:EAY82695.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14603.1); similar to unknown [Picea sitchensis] (GB:ABK24248.1); contains InterPro domain Rubisco LSMT substrate-binding (InterPro:IPR015353); contains InterPro domain SET; (InterPro:IPR001214) Range:  from: 4600994    to: 4604395    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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