Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                              -------          --------->CCA1(2)                                                                   <------         <---------ARR11(3)                          --------->At4g35610                =============         --------->ARR11(3)                          <---------At4g35610                ------>ZmHOX2a(2) ---->AGL15                                       ---------->DOF2                      ============== -----AGL15                                    --------->ANAC58                        <------ZmHOX2a(2) ----->AGL2                                    --------->AtLEC2                       <---------ARR14(2) ------AGL1                                    --------->ANAC58                       <---------ARR11(3) ------AGL2                                    --------->ANAC46 ------>ZmHOX2a(1)     --------->ARR14(2) ----->AGL3                                 <-------TEIL        ===============================HOX2a_HOX2a ----->AGL1                             --------------->AtSPL3  ==============================HOX2a_HOX2a ------AGL3          ---------->DOF2    <---------TOE2(3) ------->TEIL                --------->ARR11(3)   gggccatgagagatattggataagaaagaaatgatataccttgaggtacaagcaaagctgaacctcctctaaacgactcaaaaacccagatcgtgaagct  4430400                                          <------NtERF2                                         --------->ANAC58                                         ------>NtERF2          --------->ZAT6                 --------->ANAC58       <------ZmHOX2a(1)              ------>NtERF2  ----------->RAV1(1)                --------->ANAC58                            -------->P --------->MYB46(3)                  --------->ANAC58                            ------>MYB83 --------->RAV1(1)                   --------->ANAC46                            ------>MYB46(1) -->At4g35610                   <----------DOF2                                <---------MYB59      - ---At4g35610           <---------At4g35610                             <-------TEIL<---------------- =============HOX2a_HOX2a     <---------At4g35610  ------>ZmHOX2a(1) <---------HSFB2a(1)    <<<<<<<<<TBF1 =============HOX2a_HOX2a  <---------At4g35610  <-----------GT1      --------->HSFB2a(1) <<<<<<<<<TBF1   ccaacaacaggaacactaattgtctctgcttctgcttctacgccagcattttcctcttcttcaggctccaaacgttcgtaacctactcttcttcttcttc  4430500                                                                <---------ALFIN1                                                                --------->AtMYB61                                                               --------->MYB46(3)                                                   <---------ANAC55(2)                  --------->LBD16                                                   --------->ANAC46                    --------->ANAC46                                                   --------->ANAC55(2)               <---------At5g28300                                     <---------TOE2(2)        -------->P--------->MYB46(3) --------->ANAC58                                     <---------TOE1(2) --------->At4g35610        <-----------HVH21                                    <-----------RAV1(2)<---------At4g35610   <---------ZAT14       --           <----------DOF2     <---------CCA1(2)  <---------LBD16      >>>>>>>>>>>>>>>>>LFY--------->ANAC58 ----->ZmHOX2a(1)      <---------GLK1(1)      --------->YAB1 <-----------GT1 --------->ZAT14     <--- --------ANAC81        --------->GLK1(1)      <---------ICU4 --------->WOX13(1)  <---------ZAT6  ----   tcctcttccttctcttttctgactgaattccccatttctcaggtttgatcatcacggagctatcaaccactctatccactgtagtgtcaccgcaaaccag  4430600              <---------HSFB2a(2)              --------->HSFB2a(2)          <----------DOF2                    <---------WOX13(1) <---------RAP2.6(3)                        <-------GAMYB <---------SPL7                       <------ZmHOX2a(1)                                         <---- ------------->AtSPL3          ---------->DOF2----------->HVH21                                <----- ------ARR14(2)             --------->YAB1 <---------MYB46(3)                               <------ZmHOX2a(1) ----->ARR14(2)            <---------YAB1 <---------AtMYB61           --------->MYB52(1) <-----------RAV1(2)   agccgtactaagctttatagaaaatggggatgataaagaaggagatggttgacattggtgagtcgttctgagtaagggagagattgtagggacaggagga  4430700                         <---------ZAT6                     <---------ZAT14                  <---------At4g35610   <------NtERF2                  --------->At4g35610  ------>NtERF2                              <-----------GT1                 --------->MYB52(2)  <------NtERF2                            <---------GLK1(2)                <--------P           --------->ATERF1(1)              <---------ALFIN1             <---------ANAC46       <---------ATERF1(1)      <-----------ARR10<---------ARR11(3)             <---------ANAC58  <---------HSFB2a(1)       --------->At4g35610  --------->ARR11(3)             <---------ANAC58 <---------ARR14(2)      --------->At4g35610--------->TOE2(3) -----ARR14(2) <---------MYB52(1)  <---------DEAR3(1) --------->ZAT2<---------ALFIN1 --------------->AGL15 -ZmHOX2a(1)<---------LBD16   --------->ARR14(2)      <---------At4g35610--------->TOE1(3)   gacggacacatagttgcggtagctgtagtgggaatcgtcgtcgccatggatggatgagctgcagagcttcccacaccttagatttttctatttttgttat  4430800                                                                                                   --                                                                 --------->YAB1                    --                                   --------->ARR11(3)         <---------CCA1(2)                   ---                   <---------AHL20(2)                 <---------ANAC58                            ---                  --------->YAB1   <---------ARR11(3) <---------ANAC58                            ---                  --------->AHL20(2)    *TSS          --------->ANAC55(2)                        <---                 <---------ATHB12----------->GT1      <---------ANAC55(2)                    <-------     <----------DOF2         >>>>>>>>>TBF1       <---------ZAT6 <---------YAB1     <-----------HVH21   ctatcttctttttggtccaataaaaatggaagaagaagataattctctcttgtgttacttacttatatcatagagcctctctctgtgtcatatcagttat  4430900            <---------ANAC58     <---------AHL20(2)     --------->AHL20(1)     <---------AHL20(1)                                           --------->ANAC58     --------->AHL20(2)                               <---------ARR11(3)    --------->AHL20(2)     =============================================================MADS_MADS    <---------AHL20(2)     --------------->AGL15      --------->GLK1(2) ------->LBD16             <----------DOF2            --------->ARR11(3) ---------->CBF        <----------DOF2               --------->CCA1(1) ------>ANAC58        <---------ANAC58               --------->RVE1(1)<-----------------AG ------>ANAC58        <---------ANAC58             --------->AHL20(2)----------->RAV1(1) ------>ANAC46--------->ALFIN1               <xxxxxxxxxxxxxxxxsmallRNA(i) ------LBD16<---------ANAC46           --------->AHL20(2)         --------->ANAC58--------->DAG2 --MYB52(1) <---------ANAC58           <---------AHL20(2)<----------DOF2         ---------->DOF2   ccgcaattaaatttgggtggagttgctttctttttttgtaattaaaaaaaaaaaaaaatcttttcgatatgcaacaattttggaaaaggaaaccaaaaat  4431000                                                                                --------->AtLEC2                                                                            <---------YAB1                                                                          --------->YAB1                                                                          -------->HAHB4                                                                          -------->ATHB1                                                                          <--------HAHB4                                                                          <---------ICU4                                                                          <---------AHL20(2)                                                                          --------->ATHB51                                                                         <---------ATHB51             <---------YAB1                                              --------->ICU4        <---------At4g35610                                              <---------YAB1     <---------At5g28300     <---------ZAT14  ---------->DOF2        <---------MYB52(1)             <    <-----------GT1   <---------LBD16<-----------GT1                --------->TOE2(3)              <-   gagaaattacagcttataaatgttttcggattgcagtatatacaaacccaaagctccatagttttcggacccttaattattaatgcaaacccaaaattcg  4431100                            <---------AHL20(2)                        <---------ZAT14                           --------->AHL20(2)                         --------->ZAT14                           --------->YAB1                    <-----------HVH21          ----------------->AGL3                            --------->TGA2(1)        --------->PCF2     <---------AHL20(2)               <---------bZIP60(1)  <---------ARR14(2)       <---------AHL20(1)               --------->bZIP60(1)              -------- ---------MYB46(3)        <---------ATHB12  <---------AHL20(2)----------->HVH21            --------->ARR11(3) --------AtMYB61---------->DOF2         ------>ZmHOX2a(1)   <---------TGA2(1)    ----------->HVH21   agtggtttcggacccataaaaaggcccaataaaattggattcctagtaaattgacgcatatgatgtcacatgtacagtgatggctgaacgagagataatg  4431200                            <----------DOF2                           <---------ANAC58                           <---------ANAC58                        <-------MYC4                        ------->MYC4                        ------->PIF5                        ------->MYC2                        <-------MYC2                        <-------PIF5                        ------->MYC3                        ------->PIF4                        <-------PIF4                        <-------MYC3                       ==============================MYC_MYB                       ================bZIP_DOF                       <---------TGA1a                       --------->TGA1a                       <---------O2                       ================bZIP_DOF                     <---------ALFIN1                     <------------OsbHLH66                                       --------->SPL7                   <-----------------PIF3(1)                                     ------->TEIL       -                  --------->ANAC46                                              <---------CCA1(2)   <                  --------->PCF2             ------->GAMYB          <---------ANAC46       <---------ARR14(2)              <---------HSFB2a(2)     <---------PCF2       <---------ANAC58 --------->ANAC58   ======     <-----------HVH21 --------->O2 <---------MYB46(3)     <---------ANAC58 --------->ANAC58   ------ ->MYB52(1)   --------->HSFB2a(2)  --------->ALFIN1    ---------->DOF2   <---------REM1(2) --------->ARR14(2)   gaccaagtgtcacggtctagaccccacgtgcttgagggtgggagcaacgcgctgttccaaagcttgtctgtggtgaacacgcgtacctctctgaatcctc  4431300  Previous    Next  AGI:  At5g13730.1    Description:  SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ transcription factor. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40772.1); contains InterPro domain RNA polymerase sigma-70 factor; (InterPro:IPR000943); contains InterPro domain RNA polymerase sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA polymerase sigma-70; (InterPro:IPR014284); contains InterPro domain RNA polymeras Range:  from: 4429113    to: 4430840    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version