Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->ANAC46      <---------WRKY12                                                                ---------------     <------ZmHOX2a(2)                                                                <--------------    <---------ARR11(3)                    <---------AHL20(2)                          --------------- --------ATHB12                           --------->AHL20(2)                        <---------ICU4 --->MYB46(1)        <---------ZAT6      --------->AHL20(2)                         --------->YAB1 --->MYB83  --------->TOE2(3)         --------->AHL20(2)                   --------->TOE2(3) ---->MYB46(3)    <---------ICU4  <---------YAB1             --------->AtLEC2    --------->YAB1   aatcgagatcaacgccttaatcagtgttgaactatttcgattatttaatttcatcccctattcatgcaggtttacaatctcaacaataatcgtacaaatt  4107800                                                                            ------>MYB46(1)                                                                        --------->ANAC58                                                                        --------->ANAC58               --------->ANAC58          ---------->DOF2              --------->MYB46(3)               --------->ANAC58       --------->TOE2(3)       --------->LBD16 >AtSPL8    <------NtERF2       <------MYB46(1)             <---------At4g35610<-------TEIL -AtSPL8  <---------RAP2.6(2)   <------MYB83                <---------LBD16 ------>MYB83       <----- >AtSPL3 <---------LBD16   <------ZmHOX2a(1)              <-----------GT1 ------->GAMYB --------->GLK1(1)   ccctcaaaatttgcggcaaggaagaattaggagtcggtaatctaaaagcatgtctacgattcaccggactaaacaaccaaatacattcgaaattccattc  4107900                                                                 --------->At4g35610                                                                 <---------At4g35610      --------->ZAT18                                                                 --------->CCA1(2)     <---------ANAC46    --------->ANAC58                              --------->ARR14(2)   --------->TOE1(3)  <---------ZAT18    --------->ANAC58        <------ZmHOX2a(2)     --------->GLK1(2)----------->HVH21 <---------ZAT14 ----ATHB12            --------->MYB52(1)         <---------ARR14(2)   --------->TOE2(3)  <-------TEIL   aatagaacgcagaaaacgaaaacccaaacgatcaaaaattcgcgagtaagagaattcggtgagagagagatgaccttagacaactcgtgaagtgcatttt  4108000                                                            <-----------RAV1(1)                                                         ============================HOX2a_HOX2a                                                         ==================HOX2a_HOX2a                                                 <---------ANAC58                                                 <---------ANAC58                                   -                                        --------->DEAR3(1)  <---------MYB46(3)                      -                                      <---------At4g35610<---------MYB46(3)                        <-                                      --------->LBD16    ------>ZmHOX2a(2)                 ------>ZmHOX2a(1)                             <-----------GT1--------->YAB1<-------GAMYB                  ============                    <------ZmHOX2a(2) ------>NtERF2     =============================HOX2a_HOX2a   --               XXXXXXXXXXXXXXXXXXXX>MIR832-5P   --------->At4g35610     >>>>>>>>>TBF1    ----------->RAV1(2)              <---------ANAC46       --------->DEAR3(1) ===================HOX2a_HOX2a--------->HSFC1(2)             <---------At4g35610    <---------LBD16     <------ZmHOX2a(2)             --------->HSFB2a(1)             --------->At4g35610   <---------ATERF1(1) <---------MYB52(1)             <---------HSFC1(2)       --------->HSFB2a(2)   --------->MYB52(1) <---------At4g35610 <------ZmHOX2a(1) <---------HSFB2a(1)      <---------LBD16 --------->HSFB2a(2)  <---------YAB1--------->MYB52(2)   <------ZmHOX2a(1)    --   ctctgagttcgggattgctgagatcgagaattaactgctccgccgatgatagcttccgatcgttgttggaggaagaagaaggagaagaagctcctgagag  4108100                                                                    <------NtERF2                                                                   --------->LBD16                                                                   <------NtERF2                                                                   <---------At4g35610                                                                   --------->At4g35610                                                                   ------>NtERF2                                                                  --------->RRTF1(3)                                                                  ----------->RAV1(1)                                                                  --------->DEAR3(1)                                                                  <---------ANAC46                                                                  --------->RRTF1(2)                                                                 <------NtERF2                                                                 --------->ATERF1(1)                                                                 --------->RAP2.6(1)                                                              ------->MYC2                                                              <-------MYC3                                                              ------->MYC3                                                             --------->ANAC58                                                          <---------REM1(2)                                                 ----------->HVH21--------->RAP2.3(2)                                                <-----------TGA1 --------->RRTF1(1)                                                <-----------HVH21--------->RAP2.3(1)                                               --------->ANAC46 ------>NtERF2      --------->GLK1(1)                        --------->ANAC58 <---------ATERF1(1) <------NtERF2                                 --------->ANAC58--------->ANAC46 ----->NtERF2               ----------->ARR10  --------->bZIP60(2)--------->RAP2.3(3) ---------->RAV1(1)       <------ZmHOX2a(1)    --------->TGA1a<-------MYC2  --------->GLK1(2) --------ETT(2)        <------ZmHOX2a(1)       --------->O2  --------->ANAC46          *TSS    ------ ===========RAV      --------->ALFIN1          <---------O2  --------->ANAC58          ----------->HVH21 ------->ETT(2)  <---------At4g35610    =================bZIP_DOF--------->DEAR4(2)<---------ANAC46 --------->HVH21 --------->At4g35610    ---------->DOF2--------->DOF5.7(2) <---------GLK1(2)---------   ggcgacagatttcatggagagcggaggaggaagattagccattagagccccgtcaccgtttacacgcgccgcagagagaatcgctacttgtgacagtgaa  4108200                                            ------->TEIL                                          <-------MYC2                                          <-------PIF4                                          ------->MYC2                                          ------->MYC3                                          <-------MYC4                                          <-------PIF5                                          ------->PIF5                                          <-------MYC3                                          ------->MYC4                                         <---------O2                                         --------->TGA1a                                         <---------ANAC58                                         --------->O2                                        <-------                                         <---------ANAC58                                    <-------                                         <---------bZIP60(2)                                 <-------                                         <---------TGA1a                                  -----------                                         <---------ANAC46                                ------->MYC3                                         =========================MYC_MYB                <-------MYC3                                         <---------ANAC55(2)                            --------->ANAC58                                       <-------------DYT1      --------->LBD16          <---------TGA1a                                     <-----------HVH21        <---------ANAC55(2)       --------->ANAC55(2)                                --------->ALFIN1              <---------ANAC46          --------->bZIP60(1)                              <---------ANAC58                <---------ANAC55(1)       --------->ANAC58                              <---------ANAC46                --------->ANAC55(2)       --------->ANAC46                             --------->ATERF1(1)           <---------MYB52(1)           --------->TGA1a                             <------NtERF2------->PIF4    <-------GAMYB                 <---------ANAC55(2)                 <------ZmHOX2a(1) ------->TEIL           ========================================MYC_MYB         ------->TEIL      <---------DEAR3(1)             <-----------HVH21             --------->O2  <------ZmHOX2a(1)   --------->MYB52(1) --------->ANAC55(2) <---------LBD16  --------->TOE2(3)------ ---->DOF2<-----------TBP  <---------RAP2.3(3)    <---------ANAC58<---------ARR14(2)    <---------O2 >At5g28300 <---------AHL20(2)<---------ANAC58    <---------ANAC58--------->ARR14(2)  <-------------DYT1   aggaggagatgtatttataggacctaaggggggcgtgtatgtcacgtgcctcgcttgctccgttacgggatttgttcaaatctaaatctcacgtgacttg  4108300                               --------->TGA1a                               <---------ANAC58                               =====================================bZIP_DOF                               <---------ANAC58                               <---------TGA1a                      ----------->HVH21                     <-------MYC3                     ------->MYC3                    --------->ANAC46                    --------->bZIP60(1)                    --------->ANAC55(2)                    =====================bZIP_bZIP     <---------YAB1                    ================================================bZIP_DOF                    <---------ANAC55(2)                <---------HSFB2a(2)                <---------ICU4                    --------->ANAC58                --------->GLK1(2)                <-----------GT1                    --------->ANAC58               <---------GLK1(2)            <---------YAB1 --ANAC58           <---------TGA1a                --------->ARR11(3)         --------->ANAC55(2) --ANAC46           --------->TGA1a     --------->ANAC58                    <-----------GT1 --ANAC58           <---------O2        --------->ANAC58                  --------->CCA1(2) >HVH21             --------->O2--------->LBD16  <---------YAB1          --------->ARR11(3)        <- ----->GT1        <-------------DYT1    --------->ANAC46 ---------->DOF2 <---------ARR11(3) <--------   tgaaaaaaaaaaaaaaactctcacgtgactctcccgtgcctcacacaacttaagattctgaaagatagattataagatttacatgattcacattatgact  4108400                                                                                    <---------ANAC46                                                                                    >>>>>>>>>>E2Fa                                                                                    <---------PCF2                                                                                    <----------ID1                                                                               --------->MYB52(2)                                                                         <----------DOF2                                              --------->ANAC46           --------------------->WRI1                 --------->AHL20(2)           --------->ANAC58     <---------ARR11(3) <------NtERF2   <---------TOE2(3)       <---------TOE2(2)  --------->ANAC58     --------->ARR11(3)------>NtERF2 --------At4g35610       --------->TOE2(2)  --------->MYB46(3)    <---------CCA1(2)--------->RAP2.3(1) -YAB1           --------->YAB1    <---------YAB1            --------->ANAC46  <-----------RAV1(1)   tagctaatgtagaagacaataaaaaaacataggtattttgatatcaacaagccaaaaaaacacacactatatctactttgtttgtggcgccaaaataaac  4108500                                              --------->ARR14(2)                    <---------------AtSPL8    <-----------GT1                    --------------->AtSPL8    <---------ARR14(2)               <---------AHL20(2)            --------->GLK1(1)               --------->ATHB12              <---------CCA1(2)               <---------ICU4                <---------GLK1(1)              <---------AHL20(2)            --------->ARR14(2)         <----------DOF2                    ---------->TaMYB80      <---------ARR11(3)                 ------->GAMYB      --------->ARR11(3)         ----------->GT1  ------>ZmHOX2a(1)             <-----------HVH21      <---------AHL20(1)     <---------AHL20(2)   <----------DOF2            <---------ANAC46     --------->RVE1(1)      --------->AHL20(2)<---------ARR11(3)             <---------ANAC58     --------->CCA1(1)<---------SPL7   <---------At5g28300                   <---------ANAC58   -----  <---------AHL20(2)--------------->AtSPL3  <---------ARR14(2)              ---------->ID1      ----- --------->AHL20(2)<---------LBD16    <-----------GT1  <---------YAB1  ------->TEIL             -----   tgatttaatatctttatttattgcggtacaataaatagtttaaccgtatatccttttatttttgtttaacatgaatttgtcgtgtcactcggtgtaacat  4108600                                                                              <---------AHL20(2)                                                                              --------->AHL20(1)                                                                             --------->AHL20(2)                                                                          --------->YAB1                                                                          --------->AHL20(2)                                                                          <---------AHL20(1)                                                                          <---------ICU4                                                                          --------->ATHB51                                                                          <--------ATHB1                                                                         --------->ICU4                                                                         <---------ATHB12                                                                         <---------ATHB51                                                                 <---------WRKY38(1)       --------->GLK1(2)                                                                --------->WRKY18(1)    --------->ANAC58         <-----------RAV1(1)                   --------->MYB52(1)<---------WRKY12      --------->ANAC58      ---------->TaMYB80               --------->ATHB12      <---------TOE1(3)--------->AHL20(2) ---->AtLEC2                       <---------MYB46(3)        <---------TOE2(3)<---------YAB1 ---->ANAC58                      <---------ZAT6       ============================================== ---->ANAC58                      <---------AtMYB61    <---------------AGL15 <---------AHL20(2)   gcaaggggaatatgtggctccaaaactcaacaagtagtggtcgattggctaccgaaactaattaaggtcaatgcaataattttattgacaaacaatctag  4108700  Previous    Next  AGI:  At5g12980.1    Description:  rcd1-like cell differentiation protein, putative. similar to rcd1-like cell differentiation protein, putative [Arabidopsis thaliana] (TAIR:AT3G20800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38914.1); contains InterPro domain Cell differentiation proteins, Rcd1-like (InterPro:IPR007216) Range:  from: 4105386    to: 4108187    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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