Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <----------DOF2<---------ZAT18            --------->DAG2                                       --------->TOE1(3) --------->ZAT18     <---------At4g35610                                         --------->TOE2(3) <---------ZAT18     --------->At4g35610                                     --------->MYB46(3)  --------->ZAT14 ----GT1   ---------->DOF2           <---------ATHB12 ---------->DOF2            <---------ZAT14   agactgaagcagaaaaagggtttgcgactaatctctctaatgaacacaaaaatgaacaaaggaacaacctttacgagagacagagcacacattgcaacta  2092600                                                          <---------HSFB2a(2)                                                          --------->HSFB2a(2)                                                 --------->HSFB2a(2)                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                                              <---------ARR14(3)                                              --------->ARR14(2)                               ------                                              <---------ARR14(2)                           <---------ANAC46                                              --------->ARR11(3)                          <------ZmHOX2a(1)                                              <---------ARR11(3)                     <------ZmHOX2a(1)         --------->YAB1                       --------->ARR14(3)                 <------ZmHOX2a(1)<--     --------->MYB46(3)                       <---------AGP1                   <XXXXXXXXXXXXXXXXXXXXMIR847   gaaatgaacaaacataagtgataccaaaacattctctcttgttgtgaagatctcgaatttctaaaacccaattggagacaataggaaggagaggagtgaa  2092700                                                              <---------ANAC58                                                              <---------ANAC58                                                       <----------DOF2                                                       <-----------HVH21                                                     --------->At4g35610                            ------>NtERF2            --------->ZAT2------>ZmHOX2a(1)                            --------->LBD16          <---------At4g35610          <---------ANAC58 --------->ANAC46       <------NtERF2<---------SPL7                      --          <---------ANAC58 --------->ANAC58       --------->ZAT2   ================================== --------->MYB46(3)     <---------ARR14(2)        <---------ZAT2<------NtERF2                    <--- ---->DOF2<---------ANAC46 --------->ANAC58       <---------At4g35610                           ----- --------ID1            --------->ARR14(2)        --------->At4g35610                           <----   agaacaaaccttgcttagacctcttgaatccgccattggagttgtgagaggcagcagcttcagggcgtcctctcttacgagcatccatgtctcgataaga  2092800             --------->MYB59             --------->MYB111(1)             --------->MYB46(2)            <--------P                                    --------->CCA1(2) ------->ATHB12                               ---------->DOF2 ===HOX2a_HOX2a                            ------>ZmHOX2a(2)                     <----------DOF2 ---ZmHOX2a(2)                           --------->ARR11(3)             --------->GLK1(2)        <--- ---->ARR11(3)<------MYB83 ---------->DOF2<------ZmHOX2a(2)             <-----------ARR10--------->GLK1(2) -----ARR11(3)<------MYB46(1)            <---------ARR11(3)      <----------DOF2 ------>ZmHOX2a(1)   tcgattgaatcggagtaggtagaatcgaagaaagatgaaatgagatctcaaagttttgtgatatgagctttgcgattcttatccttttaaaattctattg  2092900                                                                                             <-------                <---------ICU4                                                              <--------             --------->YAB1                                                            --------->AHL20(2)            <---------YAB1                                                             <---------AHL20(2)          --------->YAB1        <---------ZAT2                                     --------->AHL20(2)          <---------ICU4        --------->At4g35610                           <---------AHL20(2)         <---------YAB1         --------->ZAT2                                --------->AHL20(2)       --------->YAB1           <---------At4g35610                           --------->YAB1<--------       <---------ICU4       --------->ANAC46       *TSS          --------------->AGL15--------->AHL20(2)      <---------YAB1    <---------ALFIN1   <---------AHL20(2)   <---------ANAC58  --------->AHL20(2)    --------->YAB1    <---------ALFIN1     --------->AHL20(2)   <---------ANAC58  <---------AHL20(2)   <---------YAB1 --------->At4g35610      <---------YAB1<---------TOE2(3) --------->YAB1   <-------- ------ANAC46<---------ICU4 <---------ALFIN1      <---------ANAC46     ----------->GT1<---------AHL20(2)   ggtttatcatcatcatcatcatctccacacacacagctcaacaatataaatgggggatagaggtttgcttaatttgttaataatataaattaattcgtgg  2093000                                   <---------AHL20(2)                                  --------->AHL20(2)                                  --------->YAB1                                  <---------AHL20(2)                               <---------ICU4                               --------->YAB1                              <---------AHL20(2)                           <---------ICU4               <---------TOE2(3)    ---------->DOF2        <--------HAHB4              ---------->DOF2 --------->ZAT6  --------->AtMYB61        --------->ATHB51           <---------AHL20(2)--------->TOE2(3)          <- --LBD16                  --------->ICU4          <---------AHL20(2)  <---------TOE2(3)            -- -ANAC58                  <---------YAB1         --------->AHL20(2)   <---------YAB1              <-- -ANAC46     <------ZmHOX2a(1)--------->AHL20(2)----------->TBP   --------->TOE2(3)   <---------TOE2(3) -ANAC58  <-----------RAV1(2)<---------YAB1  <---------YAB1     <-------TEIL      ------->TEIL    <--   aacaccaaaagaccaggagactaattccattattaattatatggattactataaatttaaagtatatacattaacattagaatgaatttatgttttgaca  2093100                                                                              <---------YAB1                                             --------->ANAC46              <---------YAB1        <---    ----------->GT1                          --------->ANAC58   --------->AHL20(1)               <--- -------ATHB1                                --------->ANAC58   <---------AHL20(1)            <------ ------->YAB1                            --------->ANAC58       --------->ARR11(3)    <---------ZAT18 -------YAB1                             --------->AtLEC2       <---------ARR11(3)--------------->AtSPL8 -------ATHB51                           --------->ANAC58    --------->AHL20(2)   <---------------AtSPL8   ataatagagtttatttgatgagactggaatcaaacttgtactcatgcaagtaataaacaccaaaaaaatattcaactctgattatttgtacacatattac  2093200                                                               <---------YAB1                                                               <---------AHL20(2)                                                              --------->AHL20(2)                                                         --------->LBD16        ----------->GT1                                  <<<<<<<<<<AtSR1                        <----        <---------ZAT6                                  <---------ANAC58                        -----     <---------AHL20(2)                                 <---------ANAC46                        <----    <---------YAB1                                      <---------ANAC58                        ----- ------DAG2                                      <---------AHL20(2)        --------->YAB1       ----- -------DOF2                  ----------------->AGL3   <---------LBD16    <---------YAB1        <---- -----GT1--------->TOE2(3)<---------MYB46(3) ----------->GT1 <----------DOF2               --------->AHL20(2)   tttatatttattgttaattcacatccagtggtttcaaaaatagagaattgttaaatttgcgcgttttaattgttttatcatagtcacattagttttaata  2093300                                                                                 <---------AHL20(2)                                                                            <------NtERF2                                                                           ------>NtERF2                                                                          <---------ANAC46                    --------->AHL20(2)                                    <---------ANAC58     <-----           ----------->GT1                                                <---------ANAC58     ------    --------->AHL20(2)                                                   <<<<<<<<<E2Fd        ------- -----AHL20(1)      --------->AHL20(1)                                   ---------->ID1     --------- ---->ARR11(3)      <---------AHL20(2)                                   <<<<<<<<<E2Fc     <---------YAB1 -----ARR11(3)     --------->AHL20(2)                              <---------TOE2(3) --------->AHL20(2) ---->AHL20(1)     <---------AHL20(2)     --------->HSFB2a(2)   <---------MYB52(1)   <---------AHL20(2) ---->AHL20(2)   --------->YAB1           <---------HSFB2a(2)  --------->TOE2(3)--------->AHL20(2)--- -----AHL20(2) --------->AHL20(2)   --------->ATHB12          ----------->GT1  <----------DOF2<------   tattcaaaaaatacagaaaaaataatttgggtaacgagtcatttgtagaaattttggaaaaaaatcgttaagtttggcgcgttttaattttttatcataa  2093400                                                                       --------->ANAC58                                                                       --------->ANAC55(2)                                                                       <---------ANAC55(2)  --------->At5g28300                                                  --------->ANAC58 ----ICU4                                                              --------->ANAC46 --->YAB1                                                              --------->ANAC55(1) -->ICU4                               --------->ZAT6                 <---------LBD16 >YAB1           --------->DAG2   --------->YAB1           >>>>>>>>>RAP2.2      <---------AHL20(2) ------>YAB1    ---------->DOF2  <---------YAB1            --------->TOE2(3)    --------->AHL20(2) ---YAB1<---------AHL20(2) <---------AHL20(2)    --------->YAB1  --------->AHL20(2)              ----   tcacagtaatttaaactaaaaagtagtatttttttctgataactctatcaataacattcaatctaaaaaaaatacggaacatataatttgaataatcgat  2093500  Previous    Next  AGI:  At5g06770.1    Description:  KH domain-containing protein / zinc finger (CCCH type) family protein. similar to KH domain-containing protein / zinc finger (CCCH type) family protein [Arabidopsis thaliana] (TAIR:AT3G12130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23387.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain K Homology, type 1; (InterPro:IPR004088) Range:  from: 2090704    to: 2092951    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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