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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-----
<-----
<-----------
GT1
<---------
AHL20(2)
<---------
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
--------->
ARR11(3)
--------->
AHL20(2)
<-------
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
AHL20(2)
--------
----------->
GT1
<---------
GLK1(2)
--------->
AHL20(2)
---------
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----------->
GT1
--------->
AHL20(2)
<---------
YAB1
<-----------
GT1
<---------
TOE2(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<----------
DOF2
--
HSFB2a(2)
<---------
MYB52(2)
<---------
ARR11(3)
<-----------
HVH21
--------->
ARR14(2)
agttttgttttagtaactaatcgtgtagttaatgtagaaagattttgggaagatagttaaatgtcaaatatttaattcgaagatttactttctaattatc
706900
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<--------
HAHB4
--------->
AHL20(2)
--------->
ATHB51
<xxxxxxxxxxxxxxxxxxx
-------->
ATHB1
<---------
WOX13(1)
<---------
At4g35610
--------->
YAB1
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxx
<---------
ATHB51
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxxx
<---------
YAB1
xxxxxxxxxxxxxxxx>
smallRNA(i)
------->
TEIL
<
--------->
ICU4
<---------
ZAT6
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<------
---->
YAB1
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
----
YAB1
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
--
ICU4
--------->
AHL20(2)
--------->
At5g28300
<------
ZmHOX2a(1)
--------->
ATHB12
<xxxxxxxxxxxxxxxx
->
YAB1
<---------
YAB1
----------->
GT1
<---------
TOE2(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
>
ICU4
<---------
ICU4
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
---------->
DOF2
<xxxxxxxxxxxxxxxxxxx
aaaaacaattattaaatgctagtggcagtcacagtaaataagtctcaacttgaggatttatttcacaaagtgattgcaaaaatgtatatgtagatgatca
707000
--------->
ARR11(3)
<---------
ARR11(3)
<----------
ID1
<---------
AHL20(2)
---------->
DOF2
--------->
AHL20(2)
<---------
ATHB12
xxx
smallRNA(si3)
<---------
ATHB12
xxxxx
smallRNA(i2)
--------->
AHL20(2)
--------->
WOX13(1)
xxx
smallRNA(i2)
--------->
AHL20(2)
--------->
AHL20(2)
---------
YAB1
<---------
AHL20(2)
<---------
AHL20(2)
---
YAB1
<---------
TOE2(3)
<---------
AHL20(2)
<---------
AHL20(2)
-
xxxxxxx
smallRNA(i2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
-----
xxxx
smallRNA(le3)
<---------------
AGL15
<---------
ATHB12
<---------
AHL20(1)
-------
atatgattttatttagattttatttttttagcaatacatctaataaatagttatctcatcgacaatataagtcaatttaattcaatcaataaagaacaaa
707100
<---------
AHL20(2)
--------->
AHL20(1)
--------->
ARR11(3)
<---------
AHL20(1)
----------->
GT1
--------->
TOE2(3)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
<---------
AHL20(2)
--------->
ICU4
--------->
YAB1
<---------
ATHB12
<---------
AHL20(2)
<---------
YAB1
-------->
WOX13(1)
--------->
YAB1
------>
ZmHOX2a(1)
<-----------
TBP
<------
------>
GT1
---------->
DOF2
<---------
ICU4
<---------
TOE2(3)
---------->
DOF2
<---------
--->
DOF2
--------->
YAB1
--------->
YAB1
<----------
DOF2
---------->
DOF2
--------->
YAB1
--------->
CCA1(2)
gttaatcaatttatcaaaagttatttataaaaattatcctaaatttctttaagaaatagacaaaagtcaaaagcatttataatattttggatataacttt
707200
-
<
-
<
-
<
---
----
--------->
CCA1(2)
------
<---------
ANAC55(2)
------>
ZmHOX2a(1)
--------->
TOE2(3)
--------->
WRKY12
<---------
ALFIN1
<-----------
GT1
----------->
HVH21
------>
ZmHOX2a(1)
<-------
MYC3
----------->
TBP
----------->
GT1
----------->
TGA1
==========================
------->
MYC3
--------->
AHL20(2)
>>>>>>>>>
TBF1
<---------
At4g35610
---------->
DOF2
------>
ZmHOX2a(1)
----
DOF2
------->
TEIL
------>
MYB83
>>>>>>>>>
TBF1
--------->
At4g35610
<---------
ZAT14
<---------
ALFIN1
--
GT1
<---------
AtLEC2
------>
MYB46(1)
*
TSS
--------->
MYB52(1)
<---------
GLK1(2)
----
tggccatatgcatggaccctataaataccatccttgaagaagaagaaaaaaaaa
actccg
atgacggaagagatgagtaaagagtctcctcctcctcctc
707300
<---------
TGA1a
--------->
bZIP60(1)
<---------
bZIP60(2)
--------->
TGA1a
<---------
bZIP60(1)
<---------
DEAR3(1)
--------->
bZIP60(2)
--------->
O2
-------->
TGA1a
<---------
O2
---------
O2
----------->
HVH21
-------->
bZIP60(1)
--------->
SPL7
---------
bZIP60(1)
--------->
LBD16
-------->
O2
<---------
SPL7
---------
TGA1a
<---------
LBD16
--->
NtERF2
<---------
DOF5.7(2)
----->
DEAR3(1)
--------->
MYB52(1)
--------->
O2
>
ZmHOX2a(1)
<---------
MYB52(1)
<---------
CCA1(2)
=================
bZIP_DOF
=========
bZIP_DOF
----------->
HVH21
<---------
CCA1(2)
<----------
DOF2
<---
------->
HVH21
--------->
DOF5.7(2)
--------->
ETT(1)
--------->
GLK1(2)
--------->
TGA1a
----
cgacgtcgttttcttcgttaccggacgacgtcgctctcgattgtcgggctcgtatatcgagattccattatccaactctttctctcgtctccaagggttt
707400
<----------
DOF2
--------->
TOE2(3)
<-----------------
AG
--------->
At4g35610
------>
ZmHOX2a(1)
--------->
ZAT2
----------------->
AGL2
<---------
ZAT2
----------------->
AGL1
--------->
GLK1(1)
<-----------------
AGL1
--------->
LBD16
<------
ZmHOX2a(2)
--------->
ANAC46
<---------
ARR14(2)
--------->
LBD16
--------->
ANAC58
--------->
HSFB2a(2)
--------->
ARR14(2)
------>
NtERF2
--------->
ANAC46
--------->
ABI4(1)
--------->
ANAC58
----------->
GT1
<---------
ALFIN1
------>
NtERF2
<---------
ANAC58
--------->
DEAR3(1)
----------->
RAV1(1)
<---------
ANAC58
--------->
GLK1(1)
--------->
LBD16
--------->
ANAC46
--------->
At4g35610
------
HSFB2a(2)
<---------
LBD16
<---------
ALFIN1
<---------
ANAC58
-------
----->
HSFB2a(2)
<---------
HSFB2a(2)
<---------
ARR11(3)
<---------
ANAC58
-------
cagaactctcatcgcctccccggagctcgaggccacacgatcctttatcggaaaaccagagaatcacctctgcgtctgcttgaggctgtataaaaaccct
707500
------>
ZmHOX2a(1)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
------>
MYB83
------>
MYB46(1)
----------->
RAV1(1)
------->
GAMYB
<------
<-------
TEIL
--------->
LBD16
--------->
MYB46(3)
<-------
GAMYB
------>
ZmHOX2a(1)
--------->
LBD16
------>
ZmHOX2a(1)
--------->
ANAC46
-->
TOE2(3)
<-----------------
AGL1
<---------
MYB59
--------->
TOE2(3)
-->
TOE1(3)
<-----------
GT1
<-----------
HVH21
<---------
MYB55(2)
----------->
HVH21
aatcctctctggttcatattttccccaattccgaaacagaaattgaaacccatcgtcccatggtttcctaaccaacaatatcctcaatacccgaccgttg
707600
<---------
ARR14(2)
<---------
MYB46(3)
--------->
ANAC46
--------->
YAB1
--------->
ANAC55(2)
<-------
TEIL
--------->
ARR14(2)
----------->
RAV1(1)
--------->
CCA1(2)
--------->
MYB52(1)
<------
NtERF2
--------->
GLK1(1)
--------->
ANAC58
<--------
<---------
ARR14(2)
--------->
ANAC58
<--------
--------->
ARR11(3)
<------
ZmHOX2a(1)
--------->
ALFIN1
<--------
--------->
ARR14(2)
<---------
MYB52(1)
------->
GAMYB
<---------
YAB1
<---------
---
MYB52(1)
<---------
ARR11(3)
<-------
TEIL
<------
ZmHOX2a(1)
<---------
YAB1
<---------
YAB1
tctcaaatggttcacagatatacataatcggtggattcgttaggagaaggagaagcaacagagtgtcgatttttgattatcgaacttatcaatggcgtag
707700
--------->
TGA1a
--------->
O2
--------->
ATHB12
------>
NtERF2
<---------
YAB1
--------->
LBD16
------>
ZmHOX2a(2)
<-----
<------
NtERF2
--------->
CCA1(2)
------
<---------
WRKY12
--------->
DEAR3(1)
<------
ZmHOX2a(2)
<-----
---------->
DOF2
<------
NtERF2
--------->
AGP1
-----------
=======================================
bZIP_DOF
--------->
ARR11(3)
--------->
AtLEC2
--------->
LBD16
------>
NtERF2
<---------
AGP1
<---------
At4g35610
-
ANAC46
<-----------
HVH21
--------->
LBD16
<---------
ARR11(3)
<-----------
RAV1(2)
------
-
ANAC58
<---------
ANAC58
--------->
ANAC46
--------->
At5g28300
==========================
-
ANAC58
<---------
ANAC58
<---------
LBD16
----------->
GT1
<---------
WOX13(1)
<---------
ALFIN1
--------------
TaNAC69(2)
<-----------
GT1
<---------------------
WRI1
<-----------
HVH21
===========
actccccaaaatgcgtcaacctcgagtttatcccgccgcgtctgtaatcgacggtaagatctatgtgattggaggcttcagaggctccatgcccacagat
707800
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AGI:
At5g03020.1
Description:
kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At5g03020 [Arabidopsis Thaliana] (GB:Q9LYY3;GB:Q8GX75); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G02990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71765.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Kelch (InterPro:IPR006651); contains InterPro dom
Range:
from: 707255
to: 708394
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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