Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                               --------->LBD16  -----                                                                             <---------LBD16    <----                                                                     <------MYB83              <-----                      --------->ARR11(3)                            --------->MYB111(1)        ------                      <---------ARR11(3)                            --------->MYB59            <-----             <---------YAB1                                         --------->MYB46(2)     --------->LBD16             --------->ICU4                                         <---------TOE2(3)     <---------LBD16          --------->ICU4                                        --------->WOX13(1)       <---------LBD16        <---------At4g35610 ------>ZmHOX2a(1)    *TSS         ------------>CBF<---------LBD16  ------ -----HSFB2a(2)   ---------->DOF2   <---------DAG2           ------>NtERF2 <---------ARR14(2)  <----- ---->HSFB2a(2) <---------YAB1      <----------DOF2  ------------>CBF<------MYB46(1) --------->AHL20(2)   agagagactgagatgatgatgaaagctctccttcttcactttttctgagtcaaaaaccaataccgccaattaggtagtaaccgggaattaaaccgggaat  13383700                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                  --------->YAB1                                 ----                                                  --------->ATHB51                               ---- <---------MYB59                                  <--------HAHB4                                 <--- ----->TEIL                           <--------P --------->AHL20(2)                             ----- ---->HSFB2a(1)                      <-------GAMYB<---------ICU4            <---------------AGL15---- -----HSFB2a(1)                     <---------ANAC46                       --------------->AGL15<---- ----------AtSPL3                <---------ANAC46--------->ICU4 --------->ANAC46    <------ZmHOX2a(1) --------->AtSPL8              <-----------RAV1(1)--------->ATHB12        --------->YAB1    --------- ----------AtSPL8            <------------CBF<---------YAB1  --------->ARR14(2)    <----------ID1<--- ---->TaMYB80             ------------>CBF--------->ICU4     <---------ARR14(2)   <---------TOE2(3) ----KAN4(2)       ----------->GT1  ----------->GT1  --------->YAB1   <----------DOF2 ---------->DOF2   gtaccaaaatccaaaaattagatgtaaaatcaattgtggggttgattatgaataattagaaagtatacgactcttttcataaataaggaaaagaaaaaga  13383800                                                                                       --------->AHL20(2)                                                                                      <---------YAB1                                                                                     --------->AHL20(2)                                                                                    <--------HAHB4                                                                                    --------->ATHB51                                                                                   <---------YAB1                                                                               <------NtERF2                                                                               ------>NtERF2                                                                               --------->LBD16     <---------RVE1(1)                                                        --------->ANAC58    --------->ARR11(3)                                                        --------->ANAC58    <---------GLK1(2)                                                        --------->SPL7    <---------ARR11(3)                                                     <-----------HVH21 ------>ARR11(3)                                                          --------->ANAC58 -------ARR11(3)                                                  --------->TOE2(3)--------->ICU4 ------RVE1(1)                                                   --------->At4g35610--------->YAB1 ----->RVE1(1)                                                   <---------At4g35610<---------ICU4 ----->CCA1(1)                                               <-----------HVH21--------->ANAC46 ------CCA1(1)                                              --------->MYB52(2)--------->RAP2.6(2) ---->ARR11(3)                                             <-------TEIL   <---------TGA1a ----->GLK1(1)                                          <---------ANAC58  --------->TGA1a -----ARR11(3)                           --------->ARR14(2)--------->SPL7 --------->ANAC46          - ->DOF2<---------AHL20(2)             ------>ZmHOX2a(1) <---------ANAC46  --------->ANAC58        <-- ------GLK1(1)     --------------------->WRI1           <---------ANAC58<---------ALFIN1<---------AHL20(2)   tatctagattttttttgttttgttttgaagcatcgtcttcctggttcttcgttctcttgcgttcgtcacctcaaacacgtccgccattattatatatcaa  13383900                                            --------->AHL20(2)                                            --------->AHL20(1)                                            <---------AHL20(2)                                           --------->AHL20(2)                                       --------->AHL20(1)                                       --------->AHL20(2)                                       <---------AHL20(2)                                      --------->AHL20(2)            --------->ARR14(2)        <---------AHL20(2)            --------->GLK1(2)   --------->ANAC58                                  --------->AHL20(2)            <---------ARR14(2)  --------->ANAC58    --------->AHL20(2)            <---------AHL20(2)   <---------ICU4               --------->ANAC46 <---------AHL20(2)      --------->AHL20(2)   --------->YAB1        --------------->AGL15  <---------AHL20(2)       <---------AHL20(2)  <---------ATHB12       <---------------AGL15  --------->AHL20(2)      <---------AHL20(2) -------->WOX13(1)     >>>>>>>>>>>>>>>>>LFY<---------AHL20(2)           --------->AHL20(2) -------ATHB12     <----------DOF2 --------->WOX13(1)        <----------DOF2 --------->YAB1     <----   atcaatcatgtccgaatccagcttttaccaatgtaagcaattaaattaaattaaataaaaacacttttatcaaatttaatcaaattaaaaaactgtccct  13384000                                                                                       ------>ZmHOX2a(2)                                                                                      <------ZmHOX2a(2)                                                                                     <---------ARR11(3)                                                                                     --------->ARR11(3)                                                                                     --------->AGP1                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                                                                                   ----------->ARR10                                                                                 =============HOX2a_HOX2a                                                                                 ------>ZmHOX2a(1)                                                 <---------GLK1(1)          <----------DOF2                                                 <---------At4g35610    <---------TOE2(3)                                     ---------->DOF2                  *TSS <---------ANAC58          --------->GLK1(2)       --------->ANAC46               <---------YAB1 --------->TOE2(3)         <---------GLK1(2)       --------->LBD16------->TEIL  <-----------GT1   --------->TOE1(3) ------DOF2   <------------CBF  ----------->RAV1(1)    <---------MYB52(1)  <---------ANAC58   ttcttatctgagattctattgtttctgtctacttccacagaaagaaactgcatctccgtttttttttctgatttgaggctttccttagatccttgagagc  13384100                                                                       <---------------AtSPL8                                                                       <---------------AtSPL3                                                                       --------------->AtSPL8                                                         ------>ZmHOX2a(2)                                                        <------ZmHOX2a(2)                           <                                                       --------->ARR14(2)                           -     --------->GLK1(2)           <-----------GT1       --------->ARR11(3)                          <-     ------->TEIL             <---------ICU4           <---------ARR14(2)                          <-     --------->ARR14(2)<---------ARR11(3)              <---------ARR11(3)                   <--------     <---------ARR14(2)--------->ARR11(3)     <----------DOF2          --------------->AtSPL3   -----    <---------GLK1(2) --------->RVE1(1)   <---------CCA1(2) <---------MYB52(1)    <-----------GT1  <-   aaaactgaatctgggtaattttaaaaatctcatttttacgacttatctcttttgaacgatctgttttttcatgtaagtacgatttcacctcgagatgatc  13384200 ---------ICU4 -------->ATHB12                                                                                ----- --------ATHB12                                                     --------->KAN4(2)          <----- --------YAB1                  <---------AHL20(2)                  <---------KAN4(1)     <---------TOE2(3) -YAB1<----------DOF2         <---------AHL20(2)                   --------->KAN4(1)     <---------TOE1(3) ->ZmHOX2a(2) --------->ARR14(2)                           <----------DOF2            ------>ZmHOX2a(2) -----ZmHOX2a(2)              --------->AHL20(2)       ---------->ID1          <---------MYB46(3) ---   gatcattgctcttctggttcttccatgtttgattaaatgttataacttgagggttttgtttcttttggattgttctcgcatttgttgatctatggttatc  13384300                             <---------ZAT2                             --------->ZAT2                             --------->At4g35610                             <---------At4g35610                       <---------ANAC58                       <---------ANAC58                       <-------GAMYB ---->YAB1            <---------MYB46(3) <-----------GT1 ----YAB1   <-----------GT1<-----------RAV1(2)<----------DOF2         --------->DAG2 ------->DOF2<---------At5g28300       <-----------GT1               ---------->DOF2                <   aaaagagtttggatttacagtttttggttgcagctgaaatttttcactcttttcttctctgttttgctggataaagttggatttgattcacattgttgtt  13384400                                                     <---------YAB1                                       <---------ANAC46                                 <---------YAB1 --------->ATHB12                        <---------ANAC46       <---------YAB1              >>>>>>>>>>>>>>>>>LFY                        <---------ANAC58     <---------AtLEC2 --------->CCA1(2)                     -                        <---------ANAC58   <---------YAB1    <---------ARR11(3)               <------ --------->GLK1(2)   --------->GLK1(2) <---------ANAC58      --------->ARR11(3)            <---------HSFB2a(2) ---------GLK1(2)   <---------GLK1(2)  <---------ANAC58  ---------->DOF2  <-----------GT1  --------->HSFB2a(2)   tagaatctagatgaagttgtaagattccttgtattgtgtttgcttatgcatgattgtgataaagatttaagttattttaccaatgtacaatgtccagaat  13384500                                                   ------>NtERF2         ------->MYC3                                        --------->HSFC1(2)               ------->MYC2                                        <---------HSFC1(2)               <-------MYC2                                        <---------HSFB2a(1)              <-------MYC3                                        --------->HSFB2a(1)             --------->TGA1a                                        --------->At4g35610             =============================                                        --------->ZAT2                  <---------TGA1a                                        <---------At4g35610             --------->O2            <----                                        <---------ZAT2                  <---------O2 <-------MYC3     <------NtERF2              <---------YAB1    --------->LBD16       --------->ANAC46        <----  <------NtERF2                 --------->ICU4   <---------ANAC46       <---------ANAC55(2)   <------ <---------SPL7         <---------MYB46(3)      <---------LBD16         --------->ANAC55(2)  <------- -------->ETT(2)       <---------MYB52(1)  ------>NtERF2             <---------REM1(2) --------->ATHB12 ---GLK1(2)           <-------GAMYB ------>ZmHOX2a(2)       <-----------GT1          ------->MYC3   tgtcgtcgggatgggttctaagtccgttgttgacatgatcgaagctgcctcgcgggcacatttttctggtttacacgtgaatgggcacatgaatgggttg  13384600  Previous    Next  AGI:  At4g26500.1    Description:  ATSUFE/CPSUFE/EMB1374 (EMBRYO DEFECTIVE 1374); enzyme activator/ transcription regulator. Identical to SufE-like protein, chloroplast precursor [Arabidopsis Thaliana] (GB:Q84W65;GB:O65584); similar to BolA-like family protein [Arabidopsis thaliana] (TAIR:AT1G55805.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66829.1); contains InterPro domain Fe-S metabolism associated SufE (InterPro:IPR003808); contains InterPro domain BolA-like protein (InterPro:IPR002634) Range:  from: 13382206    to: 13383649    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g26510.1    Description:  uracil phosphoribosyltransferase / UMP pyrophosphorylase (UPT1). similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT1G55810.2); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT1G55810.3); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT1G55810.1); similar to hypothetical protein OsI_034512 [Oryza sativa (indica cultivar-group)] (GB:EAY80553.1); similar to hypothetical protein O Range:  from: 13384070    to: 13388297    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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