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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ARR14(2)
<---------
ARR14(2)
-----
--------->
LBD16
--------->
DAG2
------
--------->
RAP2.6(2)
---------->
DOF2
------
--------->
ANAC58
<---------
HSFB2a(2)
------
------>
MYB46(1)
--------------->
AGL15
--------
--------->
ANAC46
<---------------
AGL15
<---------
AHL20(2)
--------->
ANAC58
----------------->
AGL3
<---------
AHL20(2)
--------->
ANAC58
----------------->
AG
<---------
AHL20(1)
--------->
ANAC58
----------------->
AGL2
--------->
At4g35610
<---------
ATHB12
-----------
HVH21
<-----------------
AGL2
<---------
At4g35610
<-----------
GT1
----
YAB1
------>
MYB83
----------------->
AGL1
<---------
YAB1
--------->
AHL20(2)
cttgtcacaccaagccgcatagatgactgaatcgtttccaattctagtaaaggcgaattttcatttgcagctaaaatttccaatttttttcaaatcaacg
13335800
<---------
RAP2.3(1)
<---------
RAP2.3(2)
<---------
ANAC46
==============================
bZIP_DOF
<---------
ANAC58
<---------
ANAC58
<---------
At4g35610
--------->
At4g35610
<---------
ZAT2
--------->
ZAT2
--------->
ZAT18
--------->
At4g35610
<---------
DEAR3(1)
<------
NtERF2
<---------
YAB1
<---------
HSFC1(2)
--------->
TGA1a
<---------
At4g35610
-->
GAMYB
--------->
DAG2
--------->
HSFC1(2)
<---------
TGA1a
--------->
RAP2.6(2)
--->
ANAC46
============================================
bZIP_DOF
<---------
DEAR3(1)
--->
ANAC58
---------->
DOF2
<---------
At4g35610
--------->
ALFIN1
<----------
DOF2
--->
ANAC58
<---------
ARR14(2)
------->
TEIL
<---------
ZAT18
<------
ZmHOX2a(1)
------
->
MYB52(1)
--------->
ARR14(2)
<---------------------
WRI1
--------->
SPL7
--------->
At4g35610
<-------
aaacgattacgatttcagaaacgcttaaagtgagaaaacgaagcttac
agagcgagctcgcgtgcggctcgaggactgcttaatcggccgctcttatcaa
13335900
--------->
ANAC46
--------->
At4g35610
--------->
LBD16
<---------
LBD16
--------->
ZAT18
<---------
At4g35610
<---------
ZAT18
------>
NtERF2
---------->
DOF2
<---------
LBD16
<---------
SPL7
------>
ZmHOX2a(1)
<---------
ANAC58
<---------
ALFIN1
<---------
ANAC58
<---------
ALFIN1
<---------
ANAC46
<---------
At4g35610
<------
NtERF2
<----------
DOF2
<-----------
HVH21
<---------
ORA47(2)
<----------
DOF2
<------------------
SPL14
----------->
GT1
<------
NtERF2
<-----------
GT1
<---------
RAP2.3(3)
<------
NtERF2
--->
WOX13(1)
<---------
ARR11(3)
<---------
DEAR3(1)
<---------
HSFB2a(2)
--------->
ZAT14
--
YAB1
--------->
ARR11(3)
--------->
LBD16
--------->
SPL7
--------->
HSFB2a(2)
<---------
RAP2.6(3)
-
tcttcggcatcgggacatctttcacctcctccgcggaaatagtcggcgtacggagagcgcttctagtcggagagagaaatagccgtagtgaagacgatga
13336000
<------
NtERF2
<------
NtERF2
--------->
LBD16
<---------
DEAR3(1)
--------->
ANAC58
<---------
LBD16
--------->
ANAC58
--------->
WRKY38(1)
--------->
GLK1(2)
--------->
SPL7
--------->
WRKY12
--------->
ARR14(2)
<---------
MYB52(1)
<---------
MYB52(1)
<---------
ARR14(2)
<-----------
HVH21
<-------
GAMYB
<---------
GLK1(2)
<-----------
GT1
--------->
MYB52(2)
--------->
MYB46(3)
--------->
At5g28300
<-----------
GT1
<---------
MYB46(3)
-------->
P
------>
ZmHOX2a(1)
----------->
GT1
------>
TEIL
<---------
SPL7
<-------
TEIL
--------->
WOX13(1)
----------->
GT1
<--------
cgaacgtttatttcccgttcgcagggaaaccaagttcgttggccggagcgaatcaaccaatgtaaatcctatagaacggtgagaatctggtgaaacatta
13336100
<---------
ANAC46
<------
NtERF2
---------->
DOF2
--------->
ANAC46
<---------
At4g35610
--------->
ANAC58
<---------
HSFB2a(1)
--------------------->
WRI1
--------->
ANAC58
--------->
HSFB2a(1)
<----------
DOF2
>>>>>>>>>
TBF1
<---------
DEAR3(1)
<---------
ARR11(3)
<-------
TEIL
--------->
ANAC58
--------->
HSFC1(2)
<---------
ANAC58
<----
-
ICU4
--------->
MYB52(1)
--------->
ANAC58
<---------
HSFC1(2)
<---------
ANAC58
<---------
ANAC46
ctggagaagtaacagaggttcgaagaagaacgtaagcaaagcggcgagaaggttccctccat
ttttgtttcgagctctttttctgcttcgccgtgttagt
13336200
----------->
GT1
<------
ZmHOX2a(1)
--------->
LBD16
------------------------>
ANAC81
--------->
ANAC46
---------->
DOF2
--------->
At4g35610
----------->
GT1
--------->
LBD16
<---------
At4g35610
--------->
TOE2(3)
----------->
GT1
--------->
GLK1(2)
<---------
ARR14(2)
<---------
HSFB2a(2)
---------->
DOF2
--
--------->
ARR14(2)
--------->
ANAC46
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
GLK1(1)
<---------
LBD16
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
GLK1(1)
<---------
ARR11(3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
TOE2(3)
--------->
ARR11(3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
DOF5.7(2)
*
TSS
--------->
RVE1(1)
xxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
At4g35610
----------->
GT1
--------->
CCA1(1)
------------------------>
ANAC81
---
-----
ZAT6
--------->
MYB52(1)
<----------
ID1
--------->
HSFB2a(2)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
gtgagaagcagataacgatatccgtaaaattgaaaaaaa
aaacaaaatatctccggaaaaaaggattaaaaaaaaaaaaaaaaaaaaaaagaagctgaaa
13336300
<
<
<
<
<
-
-
<
<
-
<x
--
<x
<x
<x
<x
<x
<xx
<-----------
HVH21
<xx
<xxxxxxxxxxxxxxx
smallRNA(se3)
<xx
--------->
TOE2(2)
<xx
--------->
TOE1(2)
---
<xxxxxxxxxxxxxxxx
smallRNA(se3)
<xx
<xxxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxx
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxx
<xxxxxxxxxxxxxxxx
smallRNA(s)
----
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxx
<-----------------
AGL1
<xxxx
----------------->
AGL1
<xxxx
<---------
ANAC46
----------->
RAV1(2)
<xxxx
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxx
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxx
--------->
ANAC58
--------->
ANAC58
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<---------
ARR14(2)
----------->
HVH21
--------->
ANAC58
------->
ANAC46
---------->
DOF2
--------->
ZAT18
------>
ZmHOX2a(2)
--------->
ANAC46
------>
TOE1(2)
--------->
YAB1
<-----------
RAV1(1)
------->
TEIL
<xxxxxxxxxxxxxxxxxx
cacacgacaacgttttagtctgatcaaaatgaaagccaaaaaatg
tggcctatacagggatcgaacctgtgaccttcgcgttattagcacgacgctctaa
13336400
<---------
ZAT18
--------->
ZAT18
--------->
ANAC58
--------->
At4g35610
<---------
At4g35610
<xxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxx
smallRNA(s2)
----->
MYB46(1)
----->
MYB83
--------->
ANAC58
xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
---------->
RAV1(2)
xxxxxxxxxxxxxxxxxxx
smallRNA(i2)
------->
MYB52(1)
xxxxxxxxxxxxxxxxxxx
smallRNA(s2)
xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
---->
GAMYB
--------->
ANAC46
xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
RVE1(1)
xxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
CCA1(1)
----->
MYB46(3)
--------->
ARR11(3)
<------------
CBF
xxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<---------
ARR11(3)
<---------
TOE2(2)
xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
----------->
ARR10
<---------
TOE1(2)
xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ZAT14
<---------
ANAC46
<--
xxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
ZAT18
<---------
ANAC58
---
xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ZAT18
<---------
ANAC58
----------->
HVH21
---
xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ZAT14
<---------
GLK1(2)
--------->
GLK1(2)
---
xx
smallRNA(fl3)
*
TSS
--------->
ALFIN1
<---------
LBD16
<---------
YAB1
<----------
DOF2
ccaactgagctaataggcc
actacgtttctaagtggtgcacttagatatttctctcggaatttcgtagattgtgattctgtgacagttttctttcaagac
13336500
----------->
RAV1(1)
<----------
ID1
--------->
ZAT18
-------
ANAC55(2)
------>
ANAC58
--------->
CCA1(2)
--------->
ARR11(3)
---------
------>
ANAC58
--------->
ARR14(2)
<---------
ARR11(3)
<--------
------>
ANAC55(2)
<---------
ARR14(2)
----------->
GT1
<-----------
GT1
<--------
aagtatcaagtgcaacaaaaaaacatcggatatgggactcgtactcgtgttcatgaagataataaactctcatataactacttgactaaaacgatatatt
13336600
<------
xxxxxxxxxxx
------->
GAMYB
<---------
TOE2(3)
<---------
ZAT6
--------->
ATHB12
xxxxxxxxxxxxxxxxxxxxx
--------->
ICU4
<xxxxxxxxxxxxxxxxxxxxx
<---------
YAB1
<xxxxxxxxxxxxxxxxxxxxx
--------->
ANAC55(2)
<---------
TOE2(3)
<---------
DOF5.7(2)
<---------
ANAC55(2)
<-----------
GT1
<xxxxxxxxxxxxxxxx
smallRNA(s)
>
ARR11(3)
--------->
YAB1
--------->
MYB52(1)
--------->
DOF5.7(2)
-
ARR11(3)
--------->
ANAC46
<---------
MYB52(2)
<xxxxxxxxxxxxxxxxxx
-
AHL20(1)
<---------
ICU4
<-----------
GT1
<-----------
GT1
---------
cgtatgcattagaaaaaacaattgtatataactaataaacatcacatgattaagttttaactgcaaataacgattttgttaccactgttaacgctcgtta
13336700
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AGI:
At4g26370.1
Description:
antitermination NusB domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO22120.1); contains InterPro domain NusB/RsmB/TIM44; (InterPro:IPR006027)
Range:
from: 13333733
to: 13336239
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g26375.1
Description:
pre-tRNA. tRNA-Ile (anticodon: AAT)
Range:
from: 13336346
to: 13336419
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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