Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <---------ANAC58                                                      <---------ANAC58                         --------->ALFIN1             <---------ANAC46                            <--             --------->YAB1                      ---------->DOF2        --------->HSFB2a(2)      <---            <---------YAB1             <---------GLK1(2)                <---------HSFB2a(2)     <----        <----------DOF2--------->ALFIN1--------->ARR11(3)     --------->AHL20(2)               ------        <---------DAG2 <-----------RAV1(1)   <---------AtLEC2 <---------AHL20(1)  <---------GLK1(1) --------HVH21 <---------YAB1          <---------ARR11(3)     <---------AHL20(2)  --------->GLK1(1)<-   gtcagtccaactttattataagagagtgttggggtttagtagattttgtatgaaaggcttgtattttattttttatggaacttgatatcccaacaatgtg  13254900                                                                             ------>ZmHOX2a(2)                                                                           <---------AGP1                                                                           <---------ARR14(3)                                                                           --------->ARR11(3)                                                                           <---------ARR11(3)                                                                           <---------ARR14(2)                                                                           --------->ARR14(2)                                                                           <-----------ARR10                                                               --------->AHL20(2)           <--------                                                               <---------AHL20(2)           <-------- ------P                                                     <----------DOF2<------ZmHOX2a(2) ----GAMYB                                                   <---------------AGL15  --------->ANAC55(2) -----MYB46(3)  <---------TOE1(2)                            --------------->AGL15  <---------ANAC55(2) --->ALFIN1     <---------TOE2(2)                            --------->TOE2(3)  <-----------HVH21 --------MYB46(3)                                      <---------ICU4      --------->ARR14(3)   gttgttcttgttcattcgcatgttttttgtgtttctaagttttgagagttgatataagaattactttaatttgtcaagatctcgtcaagtgtttatactt  13255000                                               <---------ANAC58                                               <---------ANAC58                                               <---------ANAC46                                            <-----------RAV1(1)                                          --------->SPL7                                      -------                    --------->MYB52(1)  <---------SPL7                                        -------                <------ZmHOX2a(2)      ------>ZmHOX2a(2)                                     <-------    --------->GLK1(2)                 <------ZmHOX2a(2)                                    <---------ICU4    <---------ARR11(3)               <---------ARR11(3)                                   --------->ICU4    --------->ARR11(3)               --------->ARR11(3)                                   <---------YAB1 ---GT1    <---------LBD16         --------->ICU4                                      <---------YAB1 -YAB1 <----------DOF2           ---------->DOF2<---------SPL7   <---------WOX13(1)    --------->ICU4   gatgaaaatcttttggggatcaaaacggtttgaagtaaagatcgtactgtcgtactggtgtctgtagattgatattaaactcgaacaacatgattattgt  13255100                         <-----------GT1                      <---------AHL20(2)                 <---------AHL20(2)  --------->HSFB2a(2)    --------->TOE2(3)<---------AHL20(1)    --------->TOE1(3)--------->AHL20(2)        --------->YAB1 <-----------GT1 --------->AHL20(2)  <---------HSFB2a(2) -->YAB1        --------->AHL20(2)  <---------LBD16                ----------->GT1                  < ---->GT1  -------->P<---------AHL20(2) --------->ARR14(2)        ----------->GT1             ------- --YAB1  --------->MYB46(3)      <----------DOF2          ----------->GT1              --------->AtMYB61   aatataccttaactaccatataatttttttcaattctttctggatacaattgtaagaaaacagaaaaatcggaaaaatgagaaaattcaccaaaactaat  13255200                                                            *TSS                                                        --------->LBD16                                                       <---------LBD16                                     --------->MYB52(1)--------->LBD16                               <---------WOX13(1)     <---------ANAC46                              <---------ARR14(2)      <---------LBD16  <---------MYB46(3)          --------->ARR14(2)     <---------LBD16 <--------P                   <------------CBF   <----------DOF2                                ----- -------GAMYB                <------ZmHOX2a(1)   <---------DAG2                                ------ -->MYB52(1)               <---------TOE2(3)  <-----------GT1                 -----------------------   ggggttgttttgaaattagtttgatacttgaggattgacaaacgaattctacttttccggggaaagaattagagagcgaaacagaacaaaacaaacaaaa  13255300                                                                                            ---------                                                --------->ANAC46                            ---------                                            <----------DOF2                                ----------               ------>NtERF2                <---------DAG2                                 <---------ETT(1)        ----------->HVH21           <---------GLK1(2)                                      --------->ANAC58        --------->DEAR3(1)         --------->HSFC1(2)                                      --------->ANAC58 ---->DAG2  ------>NtERF2   <------ZmHOX2a(2) <-----------GT1                --------->REM1(1) ---->DOF2 --------->DEAR3(1)      <---------HSFC1(2)                        --------->ANAC46   <---- ->ANAC81------>NtERF2<---------MYB52(1)---------->ID1                 --------->GLK1(1)------>NtERF2   agtcatgtctccgacgacgacatcgttacgatccctaagcttctcgctttacgcttcttctaattctactccgatttctacaccaattgaggcccgacag  13255400         --------->ANAC58                                                      --------->ARR11(3)         --------->ANAC58                                                      <---------ARR11(3)      <-------TEIL                                                            --------->GLK1(1) -->RAV1(1)                                        ------>ZmHOX2a(1)          <---------GLK1(1) ----- --->AtMYB77     <---------GLK1(2)       <---------ARR11(3)               ------>ZmHOX2a(2)     ----- ->HVH21 --------->ANAC46          --------------------->WRI1       <----------DOF2       <---------- ---GAMYB--------->AtLEC2        ------>ZmHOX2a(1) ==============================HOX2a_HOX2a    <----   ttactgagttcatgcaatagattctacggtctgtcctcttcgagctcttcttcctcccttactacttcatctttgatcggaaatcttgttttctcatcaa  13255500                                                             <---------RAP2.6(2)                                                            --------->RAP2.6(3)                                                           --------->MYB52(1)                               <---------ANAC58            <-----------GT1                               <---------ANAC55(2)       <---------DAG2 ---->ANAC58      <---------TOE2(3)                      <----------DOF2                            - ---->ANAC58    ---------->DOF2----------->GT1<---------WOX13(1)         <---------HSFC1(1)         < -----AGL15   --------->LBD16  <---------ANAC46   --------->GLK1(1)      <---------HSFB2a(2)       -- -----TOE2(3)--------->ANAC46  <---------ANAC58   <---------GLK1(1)      --------->HSFB2a(2)       <-   ggaatcagtctctctccgtaaaggtatacaatttcgtaaatttttgtgatggatttcaactttacggcctaaattcgagaacccatgttccacttattga  13255600                 <-----------HVH21    --------->At4g35610           ----------->GT1                             <----------DOF2 -------->ARR14(2)            --------->ATHB12                       <---------YAB1 ---------ARR14(2)   <---------ANAC46          --------->GLK1(1) <---------ANAC58 ------->GLK1(1)--------->bZIP60(1)            <---------GLK1(1) <---------ANAC58        <----------DOF2 --------GLK1(1)<---------bZIP60(1)        <---------TOE2(3)    --------->ATHB12  <-----------RAV1(1)   gaaatctgcttaattcttatgtcacttgtagtcgattgggaaattagggatttctatatgtgccattgattgtgattactctttatgtggtctttttggt  13255700                    <------MYB46(1)                    <------MYB83                   --------->MYB46(2)                                                              <-                   --------->MYB59                                                           <------MYB83                 <<<<<<<<<MYB98                                                              <------MYB46(1)                 <---------MYB52(1)                              --------->ZAT14    <---------WOX13(1)               <---------TOE2(3)                                 <---------ZAT18  --------->ATHB12<--       <---------ARR11(3)      ----------->RAV1(1)    ------>ZmHOX2a(1)        <----------DOF2    <--       --------->ARR11(3)   --------->ANAC46  --------->TOE2(3)  --------->ZAT18 <---------YAB1   <--   ccatttgaagatgttttaagttaggtctctcagccacatagacgattacattagtcctgtgtttaagttcacactgtcttactttgattgaagctaggtt  13255800  Previous    Next  AGI:  At4g26150.1    Description:  CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1); transcription factor. Identical to Putative GATA transcription factor 20 [Arabidopsis Thaliana] (GB:Q9SZI6); similar to GNC (GATA, NITRATE-INDUCIBLE, CARBON METABOLISM-INVOLVED), transcription factor [Arabidopsis thaliana] (TAIR:AT5G56860.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63090.1); contains InterPro domain Zinc finger, NHR/GATA-type; (InterPro:IPR013088); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) Range:  from: 13253219    to: 13254913    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g26160.1    Description:  thioredoxin family protein. Identical to Thioredoxin-like 2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8LEK4;GB:Q9SZI7;GB:Q9XFI0); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G29670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65368.1); contains InterPro domain Thioredoxin family (InterPro:IPR015467); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain (InterPro:IPR013766) Range:  from: 13255260    to: 13256769    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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