Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       --------->TGA1a                                                                     <---------O2            --------               <---------LBD16  ===============================================bZIP_DOF      --------             ----------->HVH21  ---------->DOF2             <---------REM1(2)   --------->ATHB12            --------->SPL7  --------->ANAC58                <---------ZAT14  <---------ALFIN1--------        <---------TOE1(2)   --------->ANAC58<---------ARR14(2)       --------->O2            --------       <---------ANAC46     <---------ANAC46--------->ARR14(2)       <---------TGA1a----------->GT1 -MYB52(1)<---------SPL7 ----------->HVH21  --------->GLK1(2)    <-----------HVH21  --------->YAB1 >GT1------>ZmHOX2a(2)   ----------->TGA1  <---------GLK1(2)--------->ZAT14 <-----------------AGL1   tcttggatcgctggtacgacggaagaagtgacgcaaaagtctacagaatctgttcaagactctacacagtcacttggctccaccattggtaatacacgcc  13058500                                                                                                  <--                                                              <---------MYB46(3)                -----                                                             <---------YAB1                  --------                                                           -------->HAHB4                    <-------                                                           <---------ICU4             <---------ANAC58                                                           --------->YAB1             <---------ANAC46                                             <---------AHL20(2)                       <---------ANAC55(2)                                 <---------MYB46(3)       --------->ICU4              <---------ANAC55(1)                                --------->ALFIN1   <------MYB83                       <---------ANAC58   ------>ZmHOX2a(1)         <---------DEAR3(1)    <---------ANAC46                   --------->ANAC55(2) ->ANAC55(1)                 <---------DREB2C(2)   <------MYB46(1)       <---------AHL20(2) <-------- ->ANAC58                 ----------->HVH21  --------->AHL20(2)<-------GAMYB         <---------LBD16 ->ANAC46              <----------DOF2    <----------DOF2 <---------YAB1 --------->AHL20(2)<-------TEIL ->ANAC58          <---------RAP2.6(2)--------->ICU4      <---------ATHB12          <-----------GT1--   tcttcctgttaaacaacgttttcggcttttgacggtggtaatgacttttaatttggtgtaatgatggttagggaataaaatgggaattacgggttcggga  13058600                                                                 <---------ARR14(2)                                                                 --------->ARR14(2)                                                                 --------->GLK1(2)         --------->ANAC58                                       <---------GLK1(2)  --------->ALFIN1                                   --------->HSFB2a(2) ----ZmHOX2a(1)                                      <---------HSFB2a(2) ---->ALFIN1                                      <---------ARR14(2)                          ------- ->HSFB2a(2)                                      --------->GLK1(2)              <---------AHL20(2) --HSFB2a(2)                              --------->GLK1(1)   ----------->ARR10  --------->AHL20(2) -LBD16  --------->ANAC58          ---------->DOF2--------->ARR14(2)         <----------DOF2  <------ ------->ALFIN1              <----------DOF2     <---------GLK1(2)   <---------At4g35610      -------   ggaggtgaggcaggccaacaaggttctatgcctttgcaaaagagatttcaagaatctggaaactgagattctgcttcttctttttaaatgtatggtttgt  13058700                   <---------AtMYB61                                              --------->AHL20(2)               <----------DOF2                                                    <---------AHL20(1)   ------>ZmHOX2a(1)                          <---------TOE2(3)                   --------->AHL20(1)   ===================================HOX2a_HOX2a ------->TEIL                    <---------AHL20(2) <---------ICU4<-------GAMYB         <---------ANAC58                            --------->AHL20(2) ---->GT1     <---------ANAC58       <---------ANAC46                        <---------YAB1 ---MYB46(3)  <---------ANAC58       <---------ANAC58                  ---------->DOF2 -->MYB52(2) <-------TEIL      ------>ZmHOX2a(2) <---------CCA1(2) --------->AtLEC2     ----------->GT1   taatcctttctaatgtgcgttgtggtttgatgatccatggcttattttgatgtatctactactagtaccatgtaaaagtatgaataaattgagttaaata  13058800                                                                     --------->ATERF1(1)                                                                 ------>NtERF2                                                               --------->ATERF1(1)                                                              --------->LBD16                                                          --------->TOE1(2)                                                          --------->TOE2(2)                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                         <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                         <---------HSFB2a(1)                                                         --------->HSFB2a(1)                                                         ----------->RAV1(2)                                                         ==============================RAV                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               <xxxxxxxxxxxxxxxxsmallRNA(se3)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                              <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                             <---------ZAT14  <---------LBD16                                             <---------At4g35610<---------DEAR3(1)                  <                                             --------->ZAT2  <---------ANAC46    --------->GLK1(1)  <                                             <---------ZAT2 <xxxxxxxxxxxxxxxxsmallRNA(s)            <                                           <xxxxxxxxxxxxxxxxsmallRNA(i)    ----------->RAV1(1)      <                                          <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               <---------ICU4--------->At4g35610--------->DEAR3(1)                 <x                         ----------->GT1 <xxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->MYB52(1)    ----              ----------->RAV1(1)       <---------ETT(2)<xxxxxxxxxxxxxxxxsmallRNA(s)            -----        --------------->AtSPL8--------->ICU4<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----------->GT1    ---------->DOF2     --------->ETT(2)------->TEIL<---------ATERF1(1)         -----   gtattgtaacttagtacaacacaaaaggagtaaaaattatcgtcgacagcagggttcgaacctgcgcgggcgaagcccaacagatttcaagtctgtctcc  13058900       <xxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxsmallRNA(s)      <xxxxxxxxxxxxxxxxsmallRNA(i)     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) --------->MYB46(3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)            --------->ICU4 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ----------->GT1 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <------MYB46(1) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       --------->MYB59 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      <--------P                                --------->CCA1(2) -->ZmHOX2a(1)                   --------->ANAC46 <---------YAB1                  <----------ID1 ---->TOE1(3)                 --------->MYB46(3)  <---------AHL20(2)      --------->ANAC46 ---->TOE2(3)         *TSS  <-----------GT1<------MYB83  <---------MYB52(1)   ---------->DOF2       -   ttaaccactcggacatatcgacttcttgtttaaccacgacgaggtaggaaatattattcgtttatttgagagttacacaacaaagctacaaggtttgaac  13059000                                                                                          <---------AHL20(2)                                                                                         <---------AHL20(2)                                                                                         --------->AHL20(2)                                                                                         <---------AHL20(1)                                                                                    --------->At5g28300                                                                                   ----------->GT1         --------->ANAC58                                                       <---------bZIP60(2)         --------->ANAC46            <---------AHL20(2)                    --------->At4g35610         --------->ANAC58           --------->AHL20(2)                     <---------At4g35610       --------->MYB52(1)    ----------->GT1               <---------GLK1(1) ----------->HVH21      - --------->ARF1        ---------->DOF2                ---------->DOF2 <-----------GT1   --------->ICU4   ttctctcccaaacggaagtagaaagaaaagaatgtttataaaatgaataagacagataaagaattcagttttcaaccagatgacatggtaattttttttg  13059100                                          ------>ZmHOX2a(2)                                         <------ZmHOX2a(2)                                        --------->ARR11(3)                                        --------->GLK1(2)                                        <---------ARR11(3)              --------->YAB1            <---------AGP1             <---------YAB1        ---------->DOF2          ------>ZmHOX2a(2)   <-------GAMYB          ====================================HOX2a_HOX2a        --------->ARR14(2)   =================HOX2a_HOX2a                                           <       =============================HOX2a_HOX2a                                                  ----       <------ZmHOX2a(1)     ------>ZmHOX2a(2)                                                 <-----   <------ZmHOX2a(2)       --------->ARR11(3)    --------->ZAT2                                <-----  <---------ARR14(2)       <---------ARR11(3)    <---------ZAT2<---------ICU4            --------->ATHB12  --------->ARR11(3)  --------->CCA1(2) --------->ARR14(2)  --------->YAB1              <------ZmHOX2a(2)  <---------ARR11(3) --------->ARR11(3) <---------ARR14(2) <---------YAB1             <------ZmHOX2a(1) ---------->ARR10    <---------ARR11(3)<------ZmHOX2a(1)<----------DOF2 <---------At4g35610    <-----   tgaagatcaggatcgatgatagagatatagatcgttgaaaaggatctagagagctcggcttttgataatgtcgaagctcatctcgctaggatcagtggct  13059200                 ------>NtERF2                 <---------RAP2.6(3)                 --------->ORA47(1)       ----------->RAV1(2)                              --------->ANAC46                    <--------     <---------ALFIN1                           <---------ANAC58                   --------->GLK1(2) -----------GT1  <---------SPL7                 <---------ANAC58                   <---------ARR14(2) ------->GT1    <---------ANAC58              --------->ARR11(3)                   --------->ARR14(2) ----ANAC58     <---------ANAC46          ------>ZmHOX2a(1)                        ------->TEIL ----ANAC58     <---------ANAC58         --------->TOE1(3)             <---------ALFIN1  ----------->HVH21 ----ANAC46---------->DOF2               --------->TOE2(3)            ------>ZmHOX2a(1)--------->At4g35610   tgtaactccacctgaatgccgtccaattctctcttaaatctatccttagagcttgcatacaccatcttcatcctcacccttgatgaatctggtgacctat  13059300                                                                                                    -                                                                  <---------ANAC46                  <                                                                --------->ZAT14                ------                                       <---------At4g35610      <---------ZAT14                ------                                      <---------TOE2(3)  <---------TOE1(3)                <----------                              --------->YAB1       <------ZmHOX2a(1)     ----------->GT1--------->YAB1     --------->YAB1        --------->YAB1   <---------YAB1 <------ZmHOX2a(1)       --------->AHL20(2) -ANAC46            <-----------GT1   <---------TOE1(3)  <---------TOE2(3)  --------->AHL20(2) ------   atatgtttcatcatccaagttttaacaaataatcaaatttaagcttattaataggaattaaggaagtgaagtgaaagattaaaaaaaaaatgataccatg  13059400  Previous    Next  AGI:  At4g25580.1    Description:  stress-responsive protein-related. similar to LTI65/RD29B (RESPONSIVE TO DESSICATION 29B) [Arabidopsis thaliana] (TAIR:AT5G52300.1); similar to LTI65/RD29B (RESPONSIVE TO DESSICATION 29B) [Arabidopsis thaliana] (TAIR:AT5G52300.2); similar to stress responsive protein [Brassica oleracea var. acephala] (GB:AAR21079.1); contains InterPro domain CAP160 (InterPro:IPR012418) Range:  from: 13056193    to: 13058811    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g25585.1    Description:  pre-tRNA. tRNA-Ser (anticodon: TGA) Range:  from: 13058841    to: 13058922    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25590.1    Description:  ADF7 (ACTIN DEPOLYMERIZING FACTOR 7); actin binding. Identical to Actin-depolymerizing factor 7 (ADF7) [Arabidopsis Thaliana] (GB:Q67ZM4;GB:O65603;GB:Q7FEI4); similar to actin-depolymerizing factor, putative [Arabidopsis thaliana] (TAIR:AT5G52360.1); similar to pollen specific actin-depolymerizing factor 2 [Nicotiana tabacum] (GB:AAL91667.1); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108) Range:  from: 13058945    to: 13060116    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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