Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------LBD16                    --------->ANAC46 <---------ICU4                  <---------ALFIN1   --------->YAB1                       <-------GAMYB                ------>ZmHOX2a(2)    <--------ATHB1                      <---------MYB46(3)               <------ZmHOX2a(2)    --------->ICU4           <---------TOE1(3)    <---------ARR14(2)              <---------ARR11(3)    <---------ATHB12<---------AtLEC2  <---------ANAC46       --------              --------->ARR11(3)------------------>ATHB9     <---------TOE2(3)    --------->ARR14(2)             --------->GLK1(1) --------->ANAC58<---------ARR14(2)     <---------ANAC58  ------>NtERF2     <---------MYB46(3)        --------->ANAC46<---------MYB52(1)     <---------ANAC58 <---------RAP2.6(2) ---------GLK1(2) ----------->RAV1(1)--------->ATHB12        --------->MYB59<---------MYB46(3) <----- --->ANAC46  <---------GLK1(1) --------->ANAC58--------->ARR14(2)<-------TEIL   <---------DEAR3(2)   cagattgttgttgagagatcccacagcatttgaacgcaatgatttcgcggttttgtatggttttaggttgattcgtggttgtcggttttgcgccttgatt  12424100                                                   <---------AHL20(1)                                                   --------->AHL20(1)                                                   <---------AHL20(2)                                                   --------->AHL20(2)                                              --------->LBD16                                             <---------HSFB2a(2)                                             --------->HSFB2a(2)         <---------LBD16                                         --------->At4g35610          <---------ZAT14              <-                                         --------->ZAT2         <-----------HVH21               ----- ->ATHB12                       <------ZmHOX2a(2) --------->AHL20(2)  --------->ZAT14    <---------AHL20(2) ----WOX13(1)     ----------->GT1        <---------At4g35610    --------->At5g28300      --------->AHL20(2)   gcaagtctgaaccagaagaaaggttatcaaatggatcagtcgaagctccagaataaattgaagagcggtcactgctctggatagttttcatttatatgta  12424200                                         --------->HSFB2a(1)                                         <---------HSFB2a(1)                                    <---------ATHB12                               <-----------HVH21                              --------->O2                              --------->ANAC46                         <---------YAB1                              --------->ANAC58                <-------GAMYB                         <                              ========================================MYC_MYB                    ----                              ===========================bZIP_DOF     <---------ARR11(3)      -------                              <---------O2  <-------TEIL     <---------MYB46(3)       <----------DOF2                              --------->ANAC58               ----------->GT1       --------------->AGL15                <---------REM1(1) --------->WOX13(1)       <---------MYB52(1)      <---------------AGL15        ================================bZIP_DOF     --------->ZAT14  <---------AHL20(1)   <---------At4g35610 --------AHL20(2)             --------->TGA1a        <---------ZAT14  --------->AHL20(1)   --------->At4g35610 -->TEIL<----------DOF2       <---------TGA1a <----------DOF2--------->MYB55(2)    ==================   tataatgcttctttttagatgtagtagaattcacgtcaatgaaaggttcttttactgaactggtggttacaatatttttggtttacttcttttagctgct  12424300                                   <--------ATHB1                                   --------->YAB1                      <---------------AGL15                      --------------->AGL15                     <---------ANAC58                     <---------ANAC46           <---------AHL20(2)      <---------ICU4           --------->AHL20(2)     --------->ICU4           --------->AHL20(1)     <---------ATHB51                                            =======           <---------ARR11(3)     <---------ATHB12                             ------>ZmHOX2a(1)           --------->ARR11(3)--------->ANAC58                      --------->ANAC58           =======           <---------AHL20(1)--------->ANAC58                      ----------->GT1            ------>ZmHOX2a(1) --------->ARR11(3)  <---------ANAC58                              --------->ANAC58          <------- <<<<<<<<<<<<<<<<LFY <-----------------AGL1                     ---------->DOF2====================== ------>DOF2         <-----------------AG                 --------->ATHB12   ----------->RAV1(2) -->At4g35610     <---------MYB52(1)                  --------->DAG2    <---------ATHB12     <------- =====================================MADS_MADS      ---------->DOF2------------>CBF <----------DOF2   aaagacattggaatatattcgtttcttgaataggcaataattctagttggaaaacaaaagtgattagaaaggcaataaatcctgagcctttaagtccttg  12424400    ----------->HVH21    <---------ETT(1)   ------>ZmHOX2a(2)                                                                            -----   --------->DEAR3(2)                                                                        -------- --------->ARR14(2)                                                                          -------- <---------ARR14(2)     <------MYB83                                                         -------- =========HOX2a_HOX2a   <------MYB46(1)       <-------TEIL                      --------------------- ==================HOX2a_HOX2a       ------------>CBF                   --------->ANAC46     <------- --ANAC58    --------->YAB1     --------->ARR11(3)           *TSS       --------->bZIP60(2)  -------- =========HOX2a_HOX2a <--------P<---------ARR11(3)          --------->PCF5--------->ZAT14 ------>ZmHOX2a(1) --ANAC58   <------ZmHOX2a(2) <---------AHL20(2)           ----------------------->TaNAC69(2)--------   tctgatccgacccgatcaaaacatgttggtataaaatcttccaataggttcacatttttgaggtccctgtttgcacatcactcttctcagtcctcacgca  12424500                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                                --------->CCA1(2)                               <---------ARR14(3)                               <-----------ARR10                               --------->AGP1                               --------->ARR11(3)                               --------->ARR14(3)                               <---------ARR11(3)                               <---------ARR14(2)                               <---------AGP1                                                   -----                               --------->ARR14(2)                                               -----                              <---------CCA1(2)                                                 -----                           <---------At4g35610                                                  <----                           --------->At4g35610                                                  ----- -->TEIL                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                           <---- ->ANAC55(2)           --------->GLK1(2)           --------->O2                                ------ ->ANAC55(1)           --------->ARR14(2)   <---------At4g35610                                <----- ->ANAC58              <---------ARR14(2)   --------->At4g35610                              <------- -->TaNAC69(2)        <---------CCA1(2) --------->HSFB2a(2)                                 --------- --ANAC55(2)   --------->ZAT2----------->ARR10--------->RAP2.3(3)                          --------->ANAC46 ->ANAC58      --------->At4g35610      --------->HSFC1(1)          <---------At4g35610   <---------LBD16 ->ANAC46      <---------At4g35610      <---------HSFB2a(2) <----------DOF2       <---------CCA1(2)   tcgtatcagagaaaatgagctcccaaatctgcagatctgcttctagagcagccaggtctcttctttcttcagccaagaatgctcgtttcttctccggtac  12424600    <-----------GT1 ------>GT1 ---->ANAC55(2)            ------>ZmHOX2a(1)                                    <---------AHL20(2) ---->ANAC58               --------->LBD16                                   --------->AHL20(2) -----ANAC55(2)          <---------LBD16   <-----------TGA1                  <---------AHL20(1) ---->ANAC58       <----------DOF2         <-----------HVH21                 --------->AHL20(1)<----- -----ANAC46     ------>ZmHOX2a(1)        --------->ANAC58            <-----------HVH21    ---------- --->SPL7      ------>ZmHOX2a(2)          --------->ANAC46           --------->O2         ------->TEIL --TEIL        ===================HOX2a_HOX2a                        <---------O2         -------->P --MYB52(1)  --------->ARR14(2)           --------->ANAC58       --------->CCA1(2) <---------YAB1 >LBD16      <---------ARR14(2)  ----------->GT1        <-------TEIL --------->ANAC46 ------->TEIL   gtaaattttctctctgatcctcttttttcctgaaaatgtgataaacgtcatgggatgatacatctagatagacgtcaaatattttatgaatctacctgtg  12424700                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                             ------>ZmHOX2a(1)                                                                                            ---------                                                                                            ---------                                                                                <----------DOF2<-----                                                                                =====================                --------->GLK1(2)                                         ==========================HOX2a_HOX2a               <---------GLK1(2)                                          ------>ZmHOX2a(2)------>ZmHOX2a(2)               --------->ARR14(2)         <-----------RAV1(1)    <---------AHL20(2)  --------->ANAC55(2)               <---------ARR14(2)        ------>ZmHOX2a(2)       <---------AHL20(1)  <---------ANAC58    ---------->ID1                      <---------At4g35610      --------->AHL20(1)  <---------ANAC58 ----AtMYB61<---------HSFB2a(2)       <---------ZAT14       >>>>>>>>>RAP2.2   <---------HSFC1(2) ->RAV1(2)  --------->HSFB2a(2)       --------->ZAT14       --------->TOE2(3) --------->HSFC1(2)   gttttcttcgttttctagattctcgattgtattgaatcagtgatctgttgtatcgtttccaatctaaaatatttgatcgaagcttttacttgatcctacg  12424800 ----ANAC46      <---------AHL20(1) ----ANAC58      --------->AHL20(2) ----ANAC58      <---------AHL20(2) --->TGA1a       --------->AHL20(1) ----O2         <---------AHL20(2) --->O2<---------ATHB12 ---TOE1(2) --------->AHL20(2)<---------ANAC46                                  <-------TEIL >TOE2(2) --------->ANAC58    <---------ANAC58                                --------->ARR14(2) >TOE1(2) --------->ANAC58    <---------ANAC58                                <---------ARR14(2) ----TGA1a----------->GT1--------->MYB52(2)                             --------->ATHB12           <- ====bZIP_DOF   --------->AHL20(2)       <---------ARR14(2)  <---------AHL20(2)--------->CCA1(2) ----   tgtgttcccatcaagaaaataaattgtttgtttcttgtgagagaatacttcttgctaacacattttatgtgaaactattggatacacaaatttagactct  12424900                                                                                         <---------MYB46(3)                                                                                         <------MYB46(1)                                                                                        <---------AtMYB61                                                                                       <---------MYB52(1)                                                                                     <-----------RAV1(1)                                                                                    ------>ZmHOX2a(2)                                                                                   <------ZmHOX2a(2)                                                                        ===================HOX2a_HOX2a                                                                        ==================HOX2a_HOX2a                             <---------ANAC58                     ---------->DOF2 <---------AGP1                         <----------DOF2                      <---------YAB1      --------->AGP1<----      <---------MYB52(1)<---------ANAC58                 <---------------AGL15    --------->ARR14(2)     --------->LBD16    <---------ANAC58                 --------------->AGL15    <---------ARR14(2)   <---------LBD16   <---------MYB52(1)                 ----------------->AGL3    --------->ARR11(3) ---------TaMYB80  <---------ICU4           <---------YAB1   --------->AHL20(2)   <---------ARR11(3) ----->YAB1  ---------->ID1  <---------ANAC58        <-----------GT1    <------ZmHOX2a(1)<------MYB83   catattccggtttttgtctcatcgttgctttgcctacataagacttcttattgattttcccattaatataaagaggatgtttaagatctgttggttttat  12425000  Previous    Next  AGI:  At4g23895.1    Description:  pleckstrin homology (PH) domain-containing protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO69540.1); contains InterPro domain Pleckstrin-like (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type (InterPro:IPR011993) Range:  from: 12422115    to: 12424373    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g23900.1    Description:  nucleoside diphosphate kinase 4 (NDK4). Identical to Nucleoside diphosphate kinase IV, chloroplast/mitochondrial precursor (NDK4) [Arabidopsis Thaliana] (GB:Q8LAH8;GB:Q9T0A5); similar to NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3), ATP binding / nucleoside diphosphate kinase [Arabidopsis thaliana] (TAIR:AT4G11010.1); similar to putative nucleoside diphosphate kinase III [Thlaspi caerulescens] (GB:AAY18431.1); contains InterPro domain Nucleoside diphosphate kinase, core; (InterPro:IPR001564) Range:  from: 12424461    to: 12426538    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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