Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <------NtERF2   <---------LBD16  ------>NtERF2  --------->MYB52(1) <---------ALFIN1 -------->MYB46(3)                                --------->CCA1(2) ----------HVH21                                 <---------ARR11(3) ------>ANAC46                                 <---------TOE2(3) ----->DEAR3(1)                          <---------AHL20(2) --->GAMYB   --------->TOE2(3)           --------->AHL20(2) ---->DEAR3(2)                           <---------AHL20(1)                                      ==== ---->MYB46(3)                           --------->ARR11(3)                                ---------- --->MYB52(1)--------->TOE1(3)           <---------ARR11(3)                            <---------ANAC46 -->P--------->LBD16    ----------->GT1  --------->AHL20(1)       <---------YAB1    <----------DOF2 -ATHB12  <-----------GT1      --------->ARR11(3)--------->ARR11(3)        <-----------HVH21     <---   cggccaccggaattaccctaaaaacatagaaaatatgttgaaatatattgagatattagtcatcgactatgactaagtgtcacaaacttttgtgtgatag  8651000                  ------>ZmHOX2a(2)                <---------AGP1                <---------ARR11(3)                --------->ARR11(3)                --------->ARR14(2)                <---------ARR14(2)             <---------ATHB12                                                                     <--      --------->WOX13(1)          <-----------GT1                                         <---------ALFIN1    <---------ATHB12          --------->AHL20(1)                                        <---------ALFIN1  --------->WOX13(1)          <---------ARR11(3)                                       ------>ZmHOX2a(1) ========================HOX2a_HOX2a                                         ----------->GT1     ---- ->HVH21>>>>>>>>>>>>>>>>>LFY  <---------AHL20(1)                      --------------->AGL15   <------ ---ZmHOX2a(1)  ------->TEIL  --------->ARR11(3)       <---------ZAT18<---------------AGL15  <-------   gattcaatcaatccaatggatcttagtaagaatattttacattctataccagtctagttcacatattttctaccacaaattgttaattcctcacaccttt  8651100                                                                                --------->YAB1                                                                               <---------YAB1                                                                            <---------YAB1                                                                          --------->YAB1                                                                          <---------ICU4                                                   --------->TOE2(3)     <---------AHL20(2)  <-------TEIL                                <---------GLK1(2)          --------->ICU4 -------AHL20(2)                        <-----------GT1                  <---------ATHB51 ----->AHL20(2)                       <---------DAG2           <---------ICU4--------->YAB1        <- ----DOF2                             <----------DOF2    --------->TOE2(3)-------->ATHB1       <----- --DAG2                          <-----------HVH21 --------->TOE1(3)     --------->AHL20(2)   -------   taaattcattttctagtttgcagtttttttttaagtgtcactttaccagattacctcaaacttaaaaattatcaaattattatcaaaatatacaaattta  8651200                                                                                                    -                                       ----------->GT1                                              <                                --------->TOE1(3)                                                   <                                --------------->AGL15                                               <                                --------->YAB1                                                     --                                --------->TOE2(3)           <-----------GT1                        --                                <---------------AGL15    <-----------GT1                       ------                         --------->AHL20(1)           <---------ARR11(3)                       <-----                         <-----------ARR10            --------->AHL20(1)                <-----------GT1    <---------YAB1       <---------AHL20(1)      --------->AHL20(2)                     ---------->ID1  --------->AHL20(2)     <---------ARR11(3)      <---------AHL20(2)                 <---------AHL20(2)  --------->YAB1         --------->ARR11(3)   --------->AHL20(1)                   <---------AHL20(1) <---------YAB1         <---------CCA1(2)    --------->AHL20(2)<---------DAG2      --------->AHL20(2) --------->ICU4   <---------ARR11(3)  --------->DAG2  <---------AHL20(1)<---------ANAC55(2)   ------- --------ICU4    <---------CCA1(2)  ---------->DOF2   --------->ARR11(3)--------->ANAC55(2)------>ZmHOX2a(1) ------GT1 ----------->GT1   <---------CCA1(2)<---------AHL20(1)<----------DOF2    <---------AHL20(2) -->AHL20(2) --------->AHL20(2)<-----------------AGL1<---------AHL20(2) ----------->GT1<-----------GT1   ctaattataaaacaagtatatatctaatatcttatcttaaaaggtaaatatataaatattttctaccttttgtcatgtaatacaatttttttcctattta  8651300         --------->GLK1(2)        <---------GLK1(2)     --------->YAB1   <---------AHL20(2) -------->ANAC55(2)   --------->AHL20(2) ------MYB46(1)  --------->AHL20(1)                       --------->ANAC58         --------->RAP2.6(3) ------MYB83     --------->AHL20(2)                       --------->ANAC58        --------->MYB52(1) ---------ANAC55(2)  --------->AHL20(2)              --------->HSFB2a(2)         --------->ANAC46 ------->MYB59   <---------AHL20(1)           --------->AHL20(2)               --------->ZAT6      -- ------->MYB111(1)   <---------AHL20(2)       <---------AHL20(2)       ----------->GT1     ---------- --->ATHB12--------->TOE2(3)     --------->DAG2--------->AHL20(2)     --------->DAG2 ------>NtERF2 <- ----AHL20(2)    <---------AHL20(2) --------->ALFIN1 <---------HSFB2a(2)     <-----------GT1  <------ -->AHL20(2)------------>CBF    ---------->DOF2<---------ICU4        ---------->DOF2<---------DEAR3(1)   ttaggtatcagaatctcaattaattaaattcagaaaaagtgtgagaaaataatttccagtaagcaaaaaaaaaaagtattaacacgacggcttcttcttt  8651400                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                             --------                                                                                            <--------                                                                                            ---------                                                                                        <------NtERF2      *TSS                                                                             ------>NtERF2    ------------------------>ANAC81                                                    ----------->RAV1(1) ------->At4g35610                                                                    ----------->HVH21 ----->AGL15                                                <-----------HVH21         --------->ETT(2) --------At4g35610       ---------->DOF2             --------->ANAC58              --------->ANAC46 ----DOF2         --------->MYB52(1)                 --------->ANAC58            --------->ANAC46   cagcaaaaaaaaaaaaacataaacggagaaagagagagagaacgatacagaagagaagccaaggtcgcagagagaaacaatacacacggcgacagatata  8651500        --------->MYB52(1)        <---------ARR14(2)    <------NtERF2   ------>NtERF2   --------->LBD16  <---------LBD16  --------->LBD16 <---------LBD16 ---ARR11(3)                                                                                  ------- -->AHL20(1)                                                                                  ------- -->ARR11(3)           --------->ARR11(3)                                                     ------- ---AHL20(1)           <---------AHL20(1)                                            <-----------GT1 ->CCA1(2)          --------->AHL20(2)                                        <---------HSFB2a(2) -ARR11(3)          --------->YAB1                        <----------DOF2     --------->HSFB2a(2) >ARR11(3)       --------->YAB1                  <---------ZAT6          <<<<<<<<<TBF1      <--------   tttcccggcgaaacgggaacaataatatatacagagagagagagagatttagtgagagagctttctagggttttcttcttctcgatttatcttcctttga  8651600                                                                 <---------ZAT2                                                                 --------->ZAT2                                                               ===============================HOX2a_HOX2a                                                               ------>ZmHOX2a(1)                    <                                                       <---------ARR11(3)                           < -->WRKY12                                             <-----------ARR10                           <- ---->HVH21                    <-----------GT1         --------->ARR11(3)                 <---------MYB52(1) -->WRKY38(1)            --------->AHL20(2)           <---------CCA1(2)                ============== --DOF2    ------>ZmHOX2a(1)  <-----------GT1       --------->YAB1                     ------>ZmHOX2a(2)   cctcgatctattcctcttccttctccataaattttcccttcttctcaccttcattcatatctctcctagctccattctagggttcttgatccgtttctct  8651700                                                       <-----------ARR10                                                      <---------CCA1(2)                                                    <---------ANAC58                                                    <---------ANAC58   ---------->ID1 --------->LBD16                 <---------ANAC58 ----------DOF2  <---------ANAC46                 <---------ANAC58 ---------DAG2  <---------LBD16<<<<<<<<<TBF1--------->MYB52(2) --------DAG2  ------>ZmHOX2a(1)           <---------TOE1(2) =====================HOX2a_HOX2a         <---------MYB52(1)  <---------CCA1(2)         <---------ANAC46   accttttcgttttcttcctccgggtataatttcttcttcaattcgtttgttttcgcgtctcttcgtctcttctaatttcatcaatttgggtcttgtaggg  8651800                                                                                                  ---                                                                                                  ---                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                               ------                    <-------GAMYB                                                              ------                    <---------ANAC46                                                          <------                   <---------DEAR3(2)                                                        <-------                   <---------MYB46(3)                                                        <-------                <-----------HVH21                                                <---------AHL20(2)             ------>ZmHOX2a(1)                                                   --------->AHL20(2)       <-----------GT1                                                       ----------->GT1------>NtERF2    <---------ARR11(3)                                                      <--------P<-----------GT1    --------->ARR11(3)                                                   <---------TOE2(3)  ---------    <---------GLK1(2)               --------->REM1(1)--------->ATHB12    <---------TOE1(3)<---------LBD16  <---------TOE2(3)--------->MYB55(2)          <-----------HVH21        <-----------RAV1(2)<---------DEAR3(1)   ttttgagattttctccttcgtcgggtgaagaaaaccctacattttgttttgtcactgattgtgttttcggtgtttcaggttgtttaatttactccggcgg  8651900  Previous    Next  AGI:  At4g15180.1    Description:  SET domain-containing protein. similar to EFS (EARLY FLOWERING IN SHORT DAYS) [Arabidopsis thaliana] (TAIR:AT1G77300.2); similar to ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4) [Arabidopsis thaliana] (TAIR:AT3G59960.1); similar to EFS (EARLY FLOWERING IN SHORT DAYS) [Arabidopsis thaliana] (TAIR:AT1G77300.1); similar to hypothetical protein OsI_027041 [Oryza sativa (indica cultivar-group)] (GB:EAZ05809.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24187.1); similar to hypothetical protein OsJ_025206 [Oryza sativa (japonica cultivar-group)] (GB:EAZ41723.1); contains InterPro domain GYF (InterPro:IPR003169); contains InterPr Range:  from: 8651406    to: 8662587    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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