Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                        ------->GAMYB                                                                                       --------->MYB46(3)                                                                                      ------>MYB83                                                                                      ------>MYB46(1)                                                                                     ----------->RAV1(1)                                                                                     --------->MYB52(1)                                                                                    ------->GAMYB                --------->ANAC58                                                   --------->MYB46(3)     --------------->AGL15     ------>ZmHOX2a(1)                                   <---------MYB55(2)    ----------------->AGL3 <---------ARR14(2)    --------->AHL20(2)               -------->P    -----    ----------------->AGL2 --------->ARR14(2)  ----------->GT1                 <---------MYB52(2)  --------->YAB1--------->ANAC58              --------->DAG2                 --------->ZAT6     ----- --------->MYB46(3)   --------->YAB1         ---------->DOF2                 <-----------GT1    <----   acaatcaccaaaaacagaacccaattacaaatcctaacacctaaaaaaaaagtaaatttcacatgtacaagagtcagtttcactaaccaacagcaagaat  17363400                          --------->DAG2                         ---------->DOF2                      --------->ANAC58           ------>ZmHOX2a(2)                                                                        -         <---------ARR11(3)--------->ANAC58       <---------MYB52(1)                        <--------         --------->ARR11(3)--------->ANAC58  <-----------GT1                                <-------- -----------AtSPL3    --------->ANAC58       -------->P               <---------WOX13(1)    --------- ---------->AtSPL8--------->ANAC46          <-----------GT1        <---------TOE2(3)        <-------- ---------->AtSPL3--------->ANAC58  <----------DOF2                <---------YAB1          <---------CCA1(2) -----------AtSPL8--------->ANAC58 --------->TOE2(3)        --------->HSFB2a(2)       <-----------GT1   ggtacttctctgatcttcataagcaagaaaagcaaaacctttagatttacccgttcccttgtctcgaataagattgacatcaacaatttcaccatatctg  17363500                                           --------->AHL20(1)     --------->ANAC46                      <---------AHL20(2)    --------->LBD16                        --------->AHL20(2)                                      <- ----------------------->ANAC81           --------->AHL20(2)                                      --- -ARR11(1)                                <---------AHL20(2)                                      <-- -ARR14(2)                             --------->AHL20(2)           --------->ANAC46       <---------ANAC46 >ARR14(2)                            --------->AHL20(2)     --------->ANAC58             <------NtERF2 -ARR11(3)   ---------->DOF2   <-----------GT1               --------->ANAC58           <---------DEAR3(1)   caattccacaaaacaaaaagacattaaacctataaacccattaaaaaaattgaaactttagaaacgaaacacaacacttactgagagaagacggcgagaa  17363600                                                                                             <-------                                                                                    --------->ARR14(2)                                                                                    <---------ARR11(3)                                                                                    <---------ARR14(2)              <------ZmHOX2a(2)------>NtERF2                                        --------->ARR11(3)        <-----------HVH21     ----------->HVH21                               --------->REM1(1)  <---      <---------DEAR3(1)    ------>NtERF2                                    <-------TEIL  ------>ZmHOX2a(1) -----ZmHOX2a(2)  --------->SPL7 <---------ANAC46                        ------->TEIL     --------->TOE2(3) ------>ARR11(3) --------->MYB52(1)                            <---------ANAC58     <---------GLK1(2) -------ARR11(3)<---------SPL7--------->DEAR3(1)               <---------ANAC58 <---------At4g35610   gatcaccttcggtgagatcgaacggtatgcctccgacgtagacatatgcagagtttttgtacttagcgtgccatgaagcttcatcagatattcctaaatc  17363700                                                                                <------NtERF2                                                                               --------->LBD16                                                                               ------>NtERF2                                                                              <---------LBD16                                                                              <---------ANAC46                                       <---------WRKY12                      <---------ANAC46                                     <-----------HVH21                       <---------LBD16       <-                                    <---------ANAC46                     <-------GAMYB  --------->TOE2(3)                                 --------->TOE2(2)                      --------->MYB52(2)     ------        <---------ANAC58        <---------ZAT2                          <---------MYB46(3)   --------        <---------ANAC46        <---------At4g35610                    <-------TEIL  <---------ARR14(2)        <---------ANAC58        ----------->RAV1(2) <----------DOF2   <---------MYB52(1)--------->TOE1(3) --CCA1(2)              <---------GLK1(2)      <-------TEIL         <---------ANAC58 --------->ARR14(2) ------YAB1 <---------CCA1(2)   --------->At4g35610<---------ICU4   <---------ANAC58<------ZmHOX2a(1)   tgattccctagcgtttatcttctgtagattcttcacctgcgtcaatggattcatcttttcaaatttctctgcgttcgttgccgggaggaaccctaaaact  17363800                                                                    <---------ARR14(2)                                                                    <------------CBF                                                                  --------->LBD16                                                              ------>MYB83                                                            --------->DEAR3(1)                                                            ----------->HVH21                                                           --------->DEAR3(2)                              <----------DOF2              --------->MYB46(3)                    <---                           ----------->GT1               --------->MYB52(1)                      ----                         <---------ANAC46                <-----------GT1                         <---                       <-----------HVH21       ======================================================                       <---------ARR14(2)      --------------->AGL15--------->ARR14(2)           ----                       --------->ARR14(2)      ------>ZmHOX2a(1)<---------LBD16              <------- -----ZmHOX2a(1)     <---------MYB46(3)       <---------MYB59 -------->P                   <--------- --->TOE1(2)  ----------------->AGL1       --------->ARR14(2) ------>MYB46(1)   --------->AHL20(2)  - ->ZAT6*TSS   ----------->RAV1(2)         <---------MYB52(1)------->GAMYB ------>NtERF2    ----------   aggaaatgagagattagcctgagcgggtcgggttttaatgacccgtttcctaattagattaaccgacccggattgaggcccatttattctattccctttc  17363900                                                                                         <-------TEIL                                                                                        --------->ARR14(1)                                                                                       --------->ARR11(1) ------HSFC1(1)                                    <---------MYB52(1)                  <---------GLK1(2) ----->HSFC1(1)                               <---------ARR14(2)                       --------->ARR14(2) ------HSFB2a(2)      <-----------GT1         --------->ARR14(2)            <---------GLK1(1) ======MADS_MADS  <---------YAB1             --------->GLK1(1)              --------->GLK1(1) ----->HSFB2a(2) <---------AHL20(2)          <---------GLK1(1)             --------->ARR14(2)   <---- ---DOF2         <---------AHL20(1)      <---------ANAC46                  <---------ARR14(2)  <----- ------AGL15   <---------AHL20(2)     --------->ARR14(2)                <---------ANAC46--------->GLK1(2) -------->YAB1 <---------YAB1         <---------ARR14(2)  <-------TEIL <---------LBD16 <---------ARR14(2) ----->AGL15  <---------AHL20(1) <---------ANAC46 <---------SPL7 <----------DOF2     ----------->ARR10   tagaataaatgtctaatattatttttacatcttctacgtgaattcgggtatccgttcgggttcagttctttttttcggatacccgttcagattcggttct  17364000              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              ===================HOX2a_HOX2a              ------>ZmHOX2a(2)                                                         <---------MYB52(1)             <------ZmHOX2a(2)                                                         <-------GAMYB             ====================HOX2a_HOX2a                                          ----------->GT1            <-----------ARR10                                                         <------MYB83            <---------AGP1                                                           --------->MYB59            --------->ARR14(2)                                                     <---------MYB52(1)            <---------ARR14(2)                                                   <------MYB46(1)           <---------ARR14(1)                                                    <---------DEAR3(2)       <---------ARR14(2)                                         xxxxxxxxxxxxxxxx>smallRNA(s)       --------->ARR14(2)                                         xxxxxxxxxxxxxxxx>smallRNA(i)      <---------GLK1(1)                                          <------MYB83    <---------MYB46(3)      --------->GLK1(1)                                          <------MYB46(1) <------MYB83  <---------ANAC46        <------ZmHOX2a(1)                     --------->MYB59xxxxxxxxxxxxxxxxxxxxxx  <---------LBD16        <------MYB46(1)                      <---------MYB52(1)<---------DEAR3(1) <---------LBD16         <------MYB83                     xxxxxxxxxxxxxxxx>smallRNA(s)<------MYB46(1) ------DOF2<---------CCA1(2)                         <---------AHL20(2)        <--------P  <---------YAB1 ------------AGL3      <--------P                 --------->TOE2(3)           <-----------HVH21------   tttttcgggtatcggatctatttgggtaggagattgagaaccattcgggtattcttaaatttcggttcggtttcgattcgggtcggttcggttattttag  17364100                                                --------->MYB52(2)                                                --------->MYB59                                              <--------P                                         <-------TEIL                                     <---------TOE1(3)                                  <-----------GT1                               --------->ARR11(3)                               <---------ARR11(3)   <-------TEIL                               --------->AHL20(1)<------MYB83                         --------->LBD16                               <---------AHL20(1)<------MYB46(1)                     --------->ANAC46         <---------ICU4      <---------AHL20(1) --------->MYB111(1)                 <xxxxxxxxxxxxxxxx        --------->ICU4       <---------ARR11(3) ----------->ARR10             <---------ARR11(1)   ----------->GT1           --------->AHL20(1) --------->MYB46(2)            <-----------ARR10 >smallRNA(fl3)      --------->CCA1(1)  --------->ARR14(2)                   <---------CCA1(2) ----->GT1           --------->RVE1(1)  <---------ARR14(2)               --------->ANAC46  --------->MYB52(1)   taaaaatgtaaaaatgaccaaaaatatccaaaatattttcaggttcgggttaggttcgggttttttctcatatatacccaaatctatccgaaatacccga  17364200              <---------MYB46(3)         <---------AHL20(1)         <---------AHL20(2)         --------->AHL20(2)         --------->ARR11(3)         <---------ARR11(3)         --------->AHL20(1)        --------->AHL20(2)   --------->LBD16                        ----------->GT1  ----------->GT1               --------->YAB1  --------->ANAC46  <----------DOF2     ------>MYB83      --------->AHL20(2) <---------LBD16    <---------DAG2 <-----------GT1 --------->YAB1                          <--------- xxxxxxxsmallRNA(se3)    <-----------GT1------>MYB46(1)<---------ANAC55(2)           <---------MYB46(3)   ttacccgtaaatatattggttactttttatccaaatataaccaaatgtaacaaaaatacttaaattatctaaaaaaaactataacattggttacttttat  17364300  Previous    Next  AGI:  At3g47120.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G19960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21476.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 17362126    to: 17363807    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version