Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          ------>ZmHOX2a(1)                                                                              ------->MYC3                              <-------TEIL                                    <-------MYC3                        ---------->DOF2                           --------->ZAT6      <---------At4g35610                   --------->YAB1                  --------->TOE1(2)         <---------ANAC46  ------                  <---------ATHB12                 --------->TOE1(3)    <---------ARR14(2)    <------          ---------->DOF2    --------->CCA1(2)     --------->TOE2(2)--------->ANAC46  ----------->RAV1(2) ------ATHB12   --------->WOX13(1)                <---------HSFB2a(1)   --------->ARR14(2)  ---------   tcatttcaaaacaaaagtcaatcacaaaaagattcaaaattcaagaccaaaaaccttcgatttcgataacacgagaaccgcgtgtttctcctgccaatca  9064000                                                                <---------GLK1(2)      ------>ZmHOX2a(1)                            ---------->DOF2  --------->ARR14(2)                  <---------ARR11(3)<---------ARR14(2)       <---------At4g35610  <---------ARR14(2)                <---------MYB52(1) <------ZmHOX2a(1)<<<<<<<<<TBF1 --->YAB1                 ------->TEIL--------->ARR11(3)--------->ARR14(2) <<<<<<<<<TBF1       <----- ---ATHB12           --------->At4g35610     <---------At4g35610--------->ARR14(2)      <---------HSFB2a(2) >WOX13(1)           <---------At4g35610     --------->At4g35610<---------ARR14(2)      --------->HSFB2a(2)   gacaaatccttcttcacatttgcagatgaactcattccattatcttcatctcccaaaggattcacagatacttcttcttcttcatctgttttagaaatta  9064100                                                                       --------->ANAC55(2)                                                               ------>ZmHOX2a(2)                                                    <---------------AGL15                                                   <-----------------AGL2                                                   <-----------------AGL3    <-----------GT1                                                  <-----------------AGL1  <---------ICU4                                                ------>ZmHOX2a(1)      --------->YAB1         <------                                                ======================HOX2a_HOX2a    --------->LBD16                                                =====================HOX2a_HOX2a    <---------HSFB2a(2)                                               <---------MYB59<------ZmHOX2a(2)     --------->HSFB2a(2) ------->GAMYB                             --------->RVE1(1) <---------ARR14(2)   ------>MYB46(1) ------GT1                               --------->AHL20(2)  --------->ARR14(2)   ------>MYB83-------   caacccaaactactaaaatcaacttcataaatcacaaaactaaaaaaatcctaactaaattgggatccaattttcgtaattaccttccagagagaagttc  9064200                           <---------YAB1                      ----------->HVH21                     ------>ZmHOX2a(2)                    <---------At4g35610                    --------->At4g35610                    <------ZmHOX2a(2)                   --------->ARR11(3)                   <---------ARR11(3)                   --------->ARR14(2)                   <---------AGP1                                  <-----------GT1       <------ZmHOX2a(2)                   <---------ARR14(2)                            <----------DOF2    <<<<<<<<<TAC1                   --------->GLK1(2)                            <---------ICU4    --------->ZAT6           --------->YAB1  --------->ICU4                --------->ARR11(3)   ------>ZmHOX2a(1)     -     ------->TEIL <------ZmHOX2a(1) <-----------GT1      <---------ARR11(3)   ==================HOX2a_HOX2a ---ARR11(3)      ====================HOX2a_HOX2a        <-----------ARR10   --------->TOE2(3)      - -->ARR11(3) <---------REM1(1) ------>ZmHOX2a(2)        <---------GLK1(2)    --------->TOE1(3)      -   ttaaacgtatcaatggtgaaggatctgacatgatcgattaactcatcagtaactcccaaaatctcatctttaccttcttccttaacactcgatccattct  9064300                                                                                            >>>>>>>>>TBF1                                                                   --------->ATHB12   >>>>>>>>>TBF1                                                                   <---------ICU4    *TSS>>>>>>>>>TBF1                   --------->GLK1(2)                  <---------HSFB2a(2)         --------->REM1(2)           ----------->RAV1(2)                        ==============================HOX2a_HOX2a           --------->At4g35610                        --------->HSFB2a(2)      ------>ZmHOX2a(1)           <---------At4g35610   --------------------->WRI1       <-------TEIL--------->TOE1(2) ----- -------->ANAC46  --------->KAN4(2)                   ------>ZmHOX2a(1)      ------>ZmHOX2a(2)  ----- -------->ANAC58  <---------GLK1(2)               <---------ARR14(2)       --------->ARR14(2)   <---- -------->ANAC58  <---------ARR14(2)              --------->ARR14(2)       <---------ARR14(2)  <-----   tcaagctattcccatctgaagattccttcttctctcttaaaaaacttcgtcgaatcctcgaagctatattcattgctgatcctgtgaagaagaagaagaa  9064400                                                                                      --------->DAG2                                                                                     ---------->DOF2        ------------>CBF                                                        --------->YAB1    <---------ARR14(2)                                                       --------->YAB1    <---------ARR11(3)                                                      <---------YAB1     <-----    --------->ARR14(2)                                                     <---------AHL20(2)  ------    --------->GLK1(2)                                                      --------->AHL20(1)  ------    --------->ARR11(3)   ----------->GT1           <-----------HVH21       <---------AHL20(1)  <----- ---->ARR14(2)        ----------->GT1           <---------ANAC58           --------->AHL20(2) <------ ---->GLK1(2)       ---------->DOF2             <---------ANAC58          --------->YAB1      ------- -----ARR14(2) <---------ANAC46                 <---------ANAC46         <---------YAB1   ----------- ----GLK1(2)   --------->TOE2(3)           <---------AtLEC2           --------->ICU4---------->DOF2   tctgaaaatctccaatgccttagaaagtagaaaaaatgggcctgggcatggcctgttactgggctactgggccttattataataacaaaaggcccaataa  9064500                                                                         <---------HSFB2a(2)                                                                         --------->HSFB2a(2)                                                                      <----------DOF2                                                                     ------>ZmHOX2a(2)                                                                     ==============================HOX2a_HOX2a                                                                    ===============================HOX2a_HOX2a                                                                    <------ZmHOX2a(2)                                                                    <---------RVE1(1) <---------TOE1(3)                                                 --------->AGP1 <---------TOE2(3)                                                 <---------ARR11(3) ----AHL20(1)                             --------->DAG2           --------->ARR11(3) --->AHL20(2)                            ---------->DOF2          --------->GLK1(1)            xxxxxx --->AHL20(1)              <-----------HVH21                 --------->ZAT2               <---------TOE2(3) ----AHL20(2)             <-----------RAV1(1)   <------NtERF2--------->At4g35610      --------->At4g35610 ---ATHB12           --------->TOE1(3)  <---------AHL20(2)   <---------At4g35610--------->At4g35610 -->AHL20(2)         --------->TOE2(3) *TSS   --------->RAP2.6(2)----------->ARR10    <---------At4g35610 ->CBF              --------->ZAT6    ----------->TBP        <---------ZAT2  ---------->DOF2<------ZmHOX2a(1)   attagggtttagagaactcttaaccctaatgtcgcatcatatataaagtcgccattgaagtgaagctgagatcttttcgaagagcggaagctaaggagag  9064600                                                                  --------->TGA2(2)                                                                 <-----------HVH21                                                                --------->ANAC46                                                                --------->ANAC58                                                                =====================================                                                                --------->ANAC55(1)                                                                --------->O2                                                                --------->ANAC55(2)                                                                --------->ANAC58                                                                --------->bZIP60(2)                                                                <---------TGA1a                                                                <---------O2                                                            --------->ANAC58                                                            --------->ANAC58                                                   <---------ANAC46                                              <---------ANAC58 ------->TEIL --------->ALFIN1                                          ================================bZIP_DOF                                   --------->GLK1(1)  <---------MYB46(3)    <-----------RAV1(1)                                  <---------ARR14(2)<-------GAMYB<-----------TGA1          <---------HSFB2a(2)     --------->ARR14(2)======================MYC_MYB          --------->HSFB2a(2)  <---------------------WRI1  --------------->AtSPL3               ----- <---------ARR14(2)          <-----------RAV1(2)--------->ALFIN1--------->TGA1a          <---------ANAC58 --------->ARR14(2)        <-----------HVH21  <---------ANAC58<---------ALFIN1<---------AtMYB61<----- xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      ---------->DOF2  <---------------AtSPL3        <---------ANAC58   gcgaattcgaatcgagaagatggtgtctgggtcagggatatgttcaaagcgtgtcgttgttgacgcacgtcaccatatgtgtggtcgtcttgcttcgatc  9064700                                                                              <-----------RAV1(2)                                                                            <-----------HVH21                                                                          <-------TEIL                                                                       <------MYB46(1)                                                                       <------MYB83                                                                       <---------MYB46(3)                                                                    <---------ANAC46                                                                  --------->MYB55(2)                                                   <---------ARR14(2) <---------AtMYB61                                                   --------->ARR14(2) --------->MYB59                                                 ----------->ARR10<---------MYB46(3)   ---------->DOF2                     <---------TOE1(1)        <---------MYB52(1)   =================================================bZIP_DOF  ============================RAV =============bZIP_DOF                 <---------TOE2(1)      <-----------RAV1(1) ---->YAB1                   <---------MYB46(3) <------ZmHOX2a(1)<---------AtMYB61         <-------TEIL -ZmHOX2a(2)              --------->ALFIN1--------->TGA1a     <---------MYB46(3)<---------At4g35610   atagctaaagagttgctcaatggacagagtgttgttgttgtccgatgtgaggagatttgtttgtctggtggtttggttcgtcagaagatgaagtacatga  9064800                                                                               <---------ANAC58                                                                 <---------ARR14(2)                                                                 --------->ARR11(3)                                                                 --------->ARR14(3)                                                                 --------->ARR14(2)<---------ANAC46                                                                 <-----------ARR10 <---------ANAC58                                                                 <---------ARR14(3)--------->MYB52(2)                                                                 --------->AGP1<---------ANAC58                                                                 <---------ARR11(3)<---------ANAC58                                                     <---------ZAT2          --------->SPL7                                                     --------->ZAT2        <---------SPL7                                                   --------->LBD16        <---------ANAC58                                                  <---------ANAC58        <---------ANAC58                     --------->ANAC46             <---------ANAC46 ------>ZmHOX2a(2)                   --------->ZAT6                 <---------ANAC58<------ZmHOX2a(2)<---------MYB46(3)           --------->ANAC58                       --------->ANAC55(2)----------->RAV1(2)           --------->ANAC58                 <---------ICU4     ----------->ARR10 <---------MYB52(1)        <---------ARR14(2)              =================================HOX2a_HOX2a   <---------DEAR3(2)        --------->ARR14(2)              ------>ZmHOX2a(1)<---------ANAC46 <---------ANAC46<-------TEIL       <------ZmHOX2a(1)                ==================================HOX2a_HOX2a <---------TOE1(2)   ggtttcttaggaaacgcatgaacactaaaccttctcatggtcctattcatttccgtgctccgtctaagatcttctggcgtaccgttcgtgggttcgtatt  9064900  Previous    Next  AGI:  At3g24820.1    Description:  BSD domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46102.1); contains InterPro domain BSD (InterPro:IPR005607) Range:  from: 9062372    to: 9064385    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g24830.1    Description:  60S ribosomal protein L13A (RPL13aB). Identical to 60S ribosomal protein L13a-2 (RPL13AB) [Arabidopsis Thaliana] (GB:Q9LRX8;GB:Q8RXI2); similar to 60S ribosomal protein L13A (RPL13aA) [Arabidopsis thaliana] (TAIR:AT3G07110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46114.1); contains InterPro domain Ribosomal protein L13, eukaryotic/archaeal; (InterPro:IPR005755); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822) Range:  from: 9064539    to: 9066096    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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