Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->ANAC46                            --------->ANAC55(1)                     --------->YAB1               --------->ANAC58               --------->ANAC58                         --------->ANAC58           --------->ANAC58 --------->ANAC58       --------->HSFB2a(2)           <---------ANAC55(2)             ---------->DOF2---------->DOF2   ------>NtERF2           --------->ANAC58 --------->ANAC58  <---------ABI4(2)----------->GT1 ------>ZmHOX2a(1)  <-----------GT1  --------->MYB52(1)--------->AtMYB61  --------->ANAC58<-----------GT1  --------->YAB1   taattaacaagataagtaagcaaacagaacacgaaatcaccaaaacaaagcaccgagaacgaaagaagaaaattttgcctcctagtaaatctcataacta  3866200                                                                                                   <-                                                                                                   --                                               --------->TOE2(3)                                  <--                                   --------->HSFB2a(2)                                <------ZmHOX2a(2)                                  ------>ZmHOX2a(2)                                  <---------ARR11(3)                                 <------ZmHOX2a(2)                                   --------->ARR14(2)                                --------->ARR14(3)                       =====================HOX2a_HOX2a                                --------->ARR11(3)                       ====================HOX2a_HOX2a                                <---------AGP1 --------->TOE1(3)         <------ZmHOX2a(1)   --------                                <---------ARR14(3)                     --------->ANAC46     ---------                                <---------ARR11(3)                     --------->ANAC58    --------->SPL7                                <---------ARR14(2)                     --------->ANAC58------>ZmHOX2a(2)                       <---------ALFIN1     <-----------GT1  --------->At5g28300     <---------ARR14(2)                 <-----------GT1--------->ARR14(2)   --------->YAB1--------->YAB1    --------->ARR11(3)    ---------->DOF2  --------->ANAC46     <---------AHL20(2)----------->GT1      ---------->DOF2-----   gcaaaaaaaagtcttaattttacccacaacttaagatctcgaatttaaaccttaatcagagacagtgaaacataaggaactaaaaaagatcggtacaaca  3866300                                                        <------NtERF2                                                       ------>NtERF2                                                      --------->RRTF1(2)                                                      --------->RAP2.3(3)                                                      --------->RRTF1(3)                                                      --------->DREB2C(2)                                                      --------->RAP2.3(2)                                                      --------->ANAC46                                                      --------->ATERF1(2)                                                      --------->RAP2.6(2)                                                      --------->DEAR3(1)                                                      <---------ATERF1(2)                                                     --------->ORA47(2)                                                     --------->ATERF1(1)                                                     --------->RAP2.6(1)                                                     --------->ERF1                                                     --------->RRTF1(1)                                                     --------->RAP2.3(1)               <---------SPL7                                                    <---------ATERF1(1)                <---------RAP2.6(3)   --------->HSFB2a(2)                              --------->At4g35610               --------->RAP2.6(2)   <---------HSFB2a(2)                              --------->LBD16                --------->ANAC46 --------GLK1(1)                                <---------ARR14(2)               <-----------RAV1(2) ------->GLK1(1)                  <---------ANAC46  ------>NtERF2              <-----------HVH21 -------GLK1(2)          <---------MYB52(2)     --------->ARR14(2)           <---------At4g35610 --->RAV1(1)       ---------->DOF2<---------ANAC58 --------->ANAC46          --------->At4g35610 >REM1(1)      ----------->GT1    <---------ANAC58--------->MYB46(3)         <---------ZAT2       <-- -->GAMYB  ---------->DOF2  -------->P         <---------CCA1(2)             --------->ZAT2------>ZmHOX2a(1)   gaattccagtagataaagagtaaaagaactaaccttgcttagacttcttgtatccgccgccattggagttgaatgagccagcttcaggccgtcctctctt  3866400                           --------->CCA1(2)                          <---------ARR14(2)                      --------->ARR14(1)                   ----------->ARR10              <---------ANAC55(2)         --------->ATHB12 --------->ARR14(2)         <---------ICU4------>ZmHOX2a(2)        --------->ICU4<------ZmHOX2a(2)                                           --------->ARR14(2)        <---------YAB1--------->CCA1(2)                                           <---------ARR14(2)   <---------ARR14(2)--------->ARR14(2)                                           --------->GLK1(2)   --------->ARR14(2)--------->AGP1                                         --------->DAG2   --------->GLK1(2) <---------ARR14(2)                                    ---------->DOF2 -------ANAC46<---------TOE2(3)                   --------->ZAT6     ---------->DOF2      <----------ID1   acgagtatccatgattaagtatagatccgatacgagagtagaaatcaaattgactctagagtctagagagcgaaaggaaaagcgaatcggagaagacaaa  3866500                                                              --------->MYB55(2)                                                              <---------MYB46(3)                                                          --------->DAG2                         <---                                                      --------->TOE1(3)                     <--------                                                   ------>MYB46(1)                         <---------                                                   ------>MYB83<-------GAMYB            --------->ARR11(3)                                                 --------->AtMYB61    <------NtERF2     <---------ARR11(3)                ---------->DOF2               <-----------GT1--------->ALFIN1  ---------->DOF2 ------            <----------ID1            ----------->GT1--------->ZAT6 <---------ANAC46    <---------GLK1(2)           ----------->GT1     <---------KAN4(2) <---------MYB59 <---------MYB46(3)   ----------->ARR10   tcgaaatcggaatagggaaaaagagttagagagaataagcgagaaaataaacctaaccctaaggtggttgtcgtcgagggaaaaagatgagattttcctc  3866600                                                      <---------ZAT18                                                      --------->ZAT14                                                      <---------ZAT14                                                --------->PCF5                                             --------->ALFIN1                                             --------->ATERF1(1)                                             <------NtERF2                                            <---------ATERF1(1)                                           --------->TGA1a                                           <---------TGA1a                                           <---------O2                                           --------->ALFIN1                                           <---------ANAC58                                  --------                                           --------->O2                                     <------ZmHOX2a(1)                                    =================bZIP_DOF                           ---------->DOF2  *TSS                    <------------CBF <---------bZIP60(2)                     --------------->AGL15 -------DOF2             --------->ATHB12  <---------ANAC46                   --------->HSFB2a(1) ---GT1                 <---------AHL20(2) <---------ANAC58                   <---------HSFC1(2) --GT1                  <---------YAB1 --------->DEAR3(2)                     <---------HSFB2a(1) >ZmHOX2a(1)     <---------MYB52(1) ---------->DOF2   --------->ZAT18         --------->HSFC1(2)  ---   ttttttgtttactcttgccggttttttttattggaacttaaaccggcgtggcccagtgcacaaaataagatgtaaaccgaaatttctctgtaaaggacaa  3866700                                                                                  --------->TGA2(2)                                                                                 <---------RAP2.6(3)                                                                                <---------ANAC55(2)                                                                                <<<<<<<<<<HY5                              --------->ZAT14                                   <---------TGA2(1)                             <---------MYB52(1)                                 <---------bZIP60(1)                           <---------ANAC58                                     --------->ANAC55(2)                          <---------DEAR3(1)                                    --------->TGA2(1)                         <---------PCF2                                         >>>>>>>>>>HY5                      --------->ALFIN1                                          --------->bZIP60(1)                    <---------ANAC58                                            <---------O2 ------>ZmHOX2a(1)               --------->TOE1(3)                                                --------->O2---------              <---------At4g35610         --------->ABI4(2)--------->At4g35610 ----------->STF1         <---------ARR11(3)<---------ANAC46          <---------YAB1            <-----------STF1     ---------->DOF2<---------ANAC46      <---------ZAT18  ----------->GT1    <---------TGA2(2)   --------->LBD16  <---------ANAC58     <---------ATERF1(1)       <-----------HVH21 --------->ICU4 <---------LBD16    <---------O2         --------->ALFIN1 --------->ANAC58   ----------->TGA1======== ---->CBF--------->ARR11(3)<---------ANAC58<---------RAP2.6(2)    ----------->GT1<-----------TGA1 ------->DOF2 --------->At4g35610     <---------DEAR3(1)  --------->ANAC58   ----------->HVH21      -   taaaccggaaagatttagcttaacgtgggccgtgaagtaagcggtgcgcctgtttacgataagctaaaatgtcaaatggatgacgtcatgttttccttat  3866800                                                            <----------DOF2                                                            <---------------AGL15                                                           <-----------------AGL2                                                   --------->ANAC58                                                   --------->ANAC58                                               ------->GAMYB--------------->AGL15                                              --------->MYB46(3)                                             <---------At5g28300             --------->TOE1(3)               --------->RAP2.6(3)     <----------DOF2                        <---------DOF5.7(2)  ------>ZmHOX2a(2)                <---------ATERF1(2)     <-----------------AGL3 >TOE2(3)    --------->TOE2(3)   <---------At5g28300 <---------ALFIN1                            ---- ========HOX2a_HOX2a            <-----------GT1<-----------TCP11(1)    --------->ANAC58          <--- -------->ARR11(3)           <----------DOF2--------->MYB52(1)         --------->ANAC58         -----   ttgatctctttgtaacattaacaaaatggaacttttaccggcccattaacggcccacaacttcttttaatggcacaaaatttcagttcgaagttactgaa  3866900         <---------YAB1               <-----------HVH21                   --------->ATHB12         --------->ICU4          <---------AHL20(2)            <---------HSFB2a(2)       <---------ICU4      <---------ATHB12                <---------GLK1(1)                    -----       --------->YAB1     --------->ANAC58<---------At4g35610  --------->HSFB2a(2)             <-----      --------->ICU4      --------->ANAC58--------->At4g35610 <---------LBD16 <------MYB83    ------>MYB83 ----->ARR11(3)          --------->WOX13(1)               <---------ARR14(2)  <------MYB46(1)-------- ------ARR11(3)   ------->TEIL  --------->YAB1            --------->ARR14(2)<---------WOX13(1)------>MYB46(1) ---->GLK1(1)  <---------YAB1   --------->AHL20(2)    <---------LBD16    <---------YAB1  <-----------GT1   atcttgggataatgactatgaaacttgcaatcaataaaaatgtcagctataactattcgggatttgtggaagcatttgattggtttctgttttaccaatc  3867000                                                                        ---------->DOF2         ----------->GT1     ---------->DOF2                        --------->ANAC46 ---->YAB1        --------->TOE2(3)                                 --------->ANAC58      ---------->DOF2 ----ATHB12       ----------->GT1                                   <----------ID1 ---------->DOF2 ->WOX13(1)      ----------->GT1                      --------->YAB1--------->ANAC58   --------->TOE1(3)   acagttgtaaacagaaaaaatgttaaatattgaaagaaaaaatgtggaagaaacaaaaataaaactcaataagccaaagagactcaaaagcttaaagaca  3867100  Previous    Next  AGI:  At3g12130.1    Description:  KH domain-containing protein / zinc finger (CCCH type) family protein. similar to KH domain-containing protein / zinc finger (CCCH type) family protein [Arabidopsis thaliana] (TAIR:AT5G06770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23387.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain K Homology, type 1; (InterPro:IPR004088) Range:  from: 3864158    to: 3866602    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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