Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------ANAC58                                                                                --------->ALFIN1                                         <----------DOF2                        <---------ANAC58                                      ---------->ID1                 ----------->GT1  --------->ANAC46     --------->ARR11(3)    ----------->GT1            --------->WOX13(1)  --------->MYB46(3)   <<<<<<     <---------ARR11(3)   <---------WOX13(1)<---------YAB1           --------->YAB1  ----------------   gactagagatgttcaatttgaattttggattgaaaaatttgtgcttttgaatgtttcaattagttatctaatagtaacaaatgtgtgtccgaaactagaa  613400                                          --------->WOX13(1)                                         <-------TEIL   <---------YAB1                         --------->MYB52(2)      --------->ANAC58                              <-----                   <---------ANAC46     <------ZmHOX2a(2)                     ------>MYB46(1)--------                 <---------ANAC58      --------->ARR14(2)         <---------MYB52(1)        ---------                 <---------ANAC46      <---------ARR14(2)       ----------->GT1 ------->GAMYB<-------                 <---------ANAC58 <---------MYB46(3)   --------->AHL20(2)     -------->P    <-------- <ZML2   <---------GLK1(1)      <-------GAMYB    --------->ANAC58--------->At5g28300     <---------YAB1 ->AGL1 ------->TEIL   <---------MYB52(1)------>ZmHOX2a(2)    ------->TEIL    ------>MYB83--------->YAB1   catatgtatggatgtctggtcgtgtgttagtttcggttgtggatccatcaaacccaatattatggaccgtaatttgttccaacccaagttgatgataatt  613500                      <--------P                    <------MYB46(1)                    <------MYB83                    <---------ANAC46                   --------->MYB59                   <---------MYB46(3)                   --------->MYB111(2)                   --------->MYB111(1)                                               <---------AHL20(2)   ---------->DOF2 --------->MYB46(2)                  ---------->DOF2              <---------YAB1 ----WOX13(1)   --------->ATHB12                  --------->AHL20(2)              --------->YAB1 ->ATHB12  <---------YAB1                        <---------AHL20(2)              <---------YAB1 >ICU4    <----------DOF2                        --------->AHL20(2)            --------->YAB1      <- --ICU4<---------ARR11(3)               --------->MYB46(3)  ----------->GT1   <-------TEIL    ------- -YAB1 --------->ARR11(3)<---------ARR14(2)    --------->YAB1            --------->AHL20(2)  --------   ggcataaaagctctttattgtttggtagatttgatttttccaacaactaaaataaataaaagttgtatattcaaaaaaaattcataataaatggaatgaa  613600                                      <---------ANAC46                                      <---------ANAC55(2)                                      --------->TGA1a                                      <---------ANAC55(1)                                      --------->ANAC55(2)                                      <---------ANAC58                                      <---------bZIP60(2)                                      <---------ANAC58                                      <---------O2                                      --------->O2                                      <---------TGA1a                                    <---------TGA2(2)                          --------->YAB1                     <---------ARR11(3)                     --------->ARR11(3)                                                    --------->ANAC58          ======================================bZIP_DOF                                 <---------ALFIN1  ==============================================MYC_MYB                  --------->AHL20(2)--------->ANAC58  ------->GAMYB     --------->YAB1 ----------->TGA1                   ----------->GT1   <---------ZAT18 ----------GT1<------ZmHOX2a(1)    ----------->HVH21        <---------AtMYB61 --------->YAB1 -------- -->AHL20(2) <----------ID1  <---------ICU4          <-----------------AGL2  --------->AHL20(2)    <- --->GT1  ---------->DOF2 --------->AHL20(2)       --------->ORA47(1)----------->GT1<-----------RAV1(1)   ataaccacatagaaaaggacaaagataataaaaatttctgacgtgttctctaccgtccaattttggtggagaagataaaataaaaattgtcgcactctag  613700                                                                       <---------WOX13(1)                                                 <-------TEIL         <------------CBF                                                 ------->TEIL       <---------AHL20(2)                                     <---------ARR14(2)             --------->AHL20(1)                                     --------->KAN4(2)          --------->AHL20(2)                                     --------->ARR14(2)        --------->AHL20(2)                                    <----------TaMYB80       <----------DOF2                  ----------->GT1   --------->KAN4(1)        --------->TOE1(3)          ----------->GT1          ---------->TaMYB80        --------->TOE2(3)                   ----   --------->ANAC46    --------->GLK1(2)     --------------->AtSPL3 --------->AHL20(2)    <---------ANAC58 ->ZAT14 ------------------------>ANAC81     --------------->AtSPL8<---------AHL20(2)     <---------ANAC58 ---------DOF2  ---------->DOF2    <---------KAN4(2) <-------TEIL  --------->AHL20(2)   --------->ARR11(3)   tctttacgaaaatagaaaaaaagaaaatcagtaggggcatattcgtctacgtacatacacaaactttaaattaattgatttttctcaaaatttcttgttt  613800           --------->ALFIN1         ---------->ID1         *TSS                    <---------DAG2        <---------AtMYB61        <----------DOF2                                                   <<     --------->ALFIN1           <---------ANAC58                                                 <xxx   <---------ANAC46             <---------ANAC58                                                <<<<<   <---------ANAC58           <-----------GT1                                              <---------GLK1(2)   <---------ANAC58      <----------DOF2             <----------DOF2                   <-----------GT1 ----->ATHB12            <---------DAG2  <----------DOF2 <----------DOF2 <---------ALFIN1--------->ANAC46   gatttgtgtggaggtgagacgagaacgcttttttgcttttcgtctttctctctctctttctttcttcactacctctcacctctctgtttacacgattctt  613900                                                       <---------ALFIN1                     ---------                                                      --------->ZAT14                       ---------                                              ------->TEIL                                 <---------        <<<<<<<<<TBF1                         -------->P                                   <---------MYB52(1)     <<<<<<<<<TBF1                         <---------At4g35610    <---------ANAC58      <---------LBD16  <<<<<<<<<TBF1                            --------->At4g35610    <---------ANAC58     --------->MYB52(1) <<<<<<<TBF1    <----------DOF2  ------>ZmHOX2a(1)    <---------ZAT14            <------ZmHOX2a(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <-----------HVH21 --------->ANAC46       <---------ARR11(3) <<<<TBF1  <<<<<<<<<TBF1         >>>>>>>>>>>>>>>>>LFY <---------REM1(2)         --------->ARR11(3)   cttcttcttcttcttcttctttagatgtcttcttcctccattgtcatctacctctctacacttcattttcttgttggaagaagatcgattaccggtgact  614000                                           <---------ICU4                                           --------->YAB1                                        <---------ICU4                                        --------->YAB1                                       <---------YAB1                                     --------->YAB1                                             <----         ----------->HVH21          <---------YAB1 --------->At4g35610   --------->O2           -----         <---------bZIP60(1)  <---------YAB1     --------->ATHB12        --------->TGA1a     --------      <---------ZAT6         <---------ANAC58 --------->YAB1             <---------O2<---------AHL20(2)  <---------YAB1<---------ZAT14   --------->YAB1 <---------ICU4          ============================ --------->TOE2(3)         <---------YAB1 <---------YAB1              <---------REM1(2)     <-------- -->HVH21--------->bZIP60(1) <---------ANAC58 <---------ICU4         <-----------HVH21     <---------LBD16 >WRKY38(1)     --------->ZAT14  <---------YAB1 <---------YAB1     ------>ZmHOX2a(1) --------->AHL20(2) --HVH21 <---------YAB1  <---------At4g35610 <---------YAB1 ----------------------->TaNAC69(2)<------NtERF2   cattcttagtgatgacagtataatgtctgatgcttattatcatcatcatcatcatcggagacattcttcctcttcacgtctatggattttaatgccggag  614100   <---------CCA1(2) -----GLK1(1)                                     <----------DOF2 ---->GLK1(1)                               <---------ARR11(3) ->LBD16           <----------DOF2   ------>ZmHOX2a(1)            <---------YAB1     --------->MYB52(2) ======================bZIP_DOF  <---------ARR11(3)   <----------DOF2 ------>ZmHOX2a(2) -ANAC46    <----------DOF2------->TEIL<---------ATHB12   <-----------GT1       <---------TOE2(3)   ttcccatgtcttctctttcacctttgatgaatcaaggtcctatcaatttcttctttcttttctctgttttgatcggcaaattttggttatttgttttgtt  614200                                                      --------->YAB1                                                     <---------YAB1                  --------->TOE2(3)           <---------AtMYB61                          <---------At4g35610          <---------ANAC46                  <---------MYB46(3)                           --------->At4g35610          ----------->GT1                 <---------ANAC58    <-------TEIL <---------ATHB12      <---------ARR14(2)                  <---------ANAC58 <---------At4g35610         <-----------RAV1(2)      --------->ARR14(2)    <<<<<<<<<TBF1 <-------GAMYB    --------->At4g35610------->TEIL    <<<<<<<   tttaaacggattgggtttaatctcagtttcttcttcttggtttgggttgtggtttatgatcagatgcaatgtggcaaatgaatttgagttcagatgaaac  614300  Previous    Next  AGI:  At3g02820.1    Description:  zinc knuckle (CCHC-type) family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO15419.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Replication fork protection component Swi3; (InterPro:IPR012923) Range:  from: 611531    to: 613455    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g02830.1    Description:  ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding. Identical to Zinc finger CCCH domain-containing protein ZFN1 (ZFN1) [Arabidopsis Thaliana] (GB:Q8GXX7;GB:Q9M8S4;GB:Q9XFB8); similar to ZFN3 (ZINC FINGER PROTEIN 3), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G16540.1); similar to Zinc finger CCCH domain-containing protein ZFN-like (GB:Q9SWF9); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 613809    to: 616151    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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