Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <----------                                                                                   --------->ANAC46                                                                            --------->ARR11(3)                                                                            <---------ARR11(3) ------TGA1a        --------->At4g35610                                     --------->ARR14(2) ----->TGA1a        <---------At4g35610                                     <---------ARR14(2) ----->O2         <--------P                            <---------ALFIN1    <---------GLK1(2) ------O2       <------MYB46(1)                      --------->LBD16      <---------TOE2(2) ----ALFIN1     <------MYB83                     --------->KAN4(2)        <---------TOE1(2)     <----   catgacttcaatggtggaaggtagctcaatactctccaattcatcggtgattatccccaaacccttgagatagtcgcagattttgacgcgattcacgagc  18226100                                                                     <-------GAMYB                                 --------->ZAT14                --------->ARR14(2)                            ----------->HVH21            <----------DOF2                          --------->TGA1a         --------->HSFB2a(2)<---------ANAC58                          --------->O2            <---------HSFB2a(2)<---------ANAC58                          <---------O2     --------->TOE2(1)   --------->ATHB12  <----------DOF2         ==========================================bZIP_DOF            --------->LBD16  ==================================bZIP_DOF <xxxxxxxxxxxxxxxxsmallRNA(s)      --------->ZAT18 -GT1                     <---------TGA1a  --------->TOE1(1)  <---------YAB1   <---------ZAT18 -----GLK1(2)    <-----------GT1 <---------ZAT14 <---------LBD16<---------ARR14(2)      ------>ZmHOX2a(1)   ttctctttcttcccttgtataactccccatgtgactgtaggcatctcgtactctggaaactttgaagattgggttgcatagtgagcaatcctgaaaatcg  18226200                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                            <---------AGP1                            <---------ARR14(2)                            --------->ARR14(2)                            <---------ARR11(3)                            --------->GLK1(2)                            --------->ARR11(3)                           <------ZmHOX2a(1)                                    --------->GLK1(2)  --                    <---------ARR11(3)                                ---------->DOF2          ------                    --------->ARR11(3)                 <---------ANAC46 --------->ICU4 <----------DOF2   aacaagggttttgaaattgagggatattaggatctgggtttatcagggttttagcttcagtggaagtaatcggaaagatgagactctgtcttttgagtaa  18226300                                             <---------HSFB2a(2)                                         --------->GLK1(1)                                         --------->CCA1(2)                                        --------->ARR14(2)                                        <---------ARR14(2)                                    --------->LBD16     ------->TEIL          <---------At4g35610 ------->TOE1(2) ------>ZmHOX2a(1) <---------HSFB2a(2)                             --------->YAB1 ---->DOF2    ------>ZmHOX2a(1)    --------->HSFB2a(2)    <---------HSFB2a(2)      --------->AHL20(2)   agctacgaacttgttcctcctaagaagatagctcattctggagatacccagaagattgttgtcgaagaagattacgacttcgcaataaaaatcaaatggg  18226400                                                                     <-----------HVH21                                                                    <------NtERF2                                                                    <---------ANAC46                                                                    <---------ANAC58                                                                    <---------ANAC58                                                                    <---------TGA1a                                                                    --------->TGA1a                                                                   ------>NtERF2                                                              ---------->DOF2                <----------DOF2                               ================bZIP_DOF                <---------DAG2                               ---------->DOF2                ==========================================bZIP_DOF<---------ANAC58            ------>ZmHOX2a(1)                                *TSS <---------ANAC58          ------>ZmHOX2a(2)                                --------->ANAC58          ===========================HOX2a_HOX2a           --------->ANAC58         ============================HOX2a_HOX2a           --------->ANAC46         <------ZmHOX2a(2)                                <-------TEIL----------->HVH21        <---------ARR14(2)                               --------->ARR14(1)        <---------ARR11(3)                               --------->CCA1(2)        --------->ARR14(3)                              <---------ARR14(2)        <---------ARR14(3)                              --------->ARR14(2)        --------->ARR11(3)                              --------->ARR11(1)        <---------GLK1(2)                              --------->CCA1(2)       --------->ANAC58        --------->ARR14(2)                      <---------O2 =================bZIP_DOF       --------->RVE1(1)      <------ZmHOX2a(1) ========================bZIP_DOF      ----------->ARR10  ----------->HVH21      <---------TGA1a   <---------ANAC46   --------->MYB52(1)    ---------->DOF2    ----------->RAV1(2)    --------->CCA1(2)--------->DAG2  --------->ANAC58    <-   taatcgaaaagatcctcgctttctcgcctgaaggagtttagcgattagagacgagagagatacgaaaggcgcgtgagagagaagccctaacgagagagag  18226500                                           --------->TOE2(3)                             ------>MYB83  ----------->GT1                                <---------YAB1                  <----------DOF2----------->GT1                                        --------->YAB1               ------>NtERF2 ------>MYB46(1)                                           <---------YAB1       <-----------GT1   <---------At5g28300                                           --------->ICU4     <-----------GT1    <-----------GT1   ----------->GT1                    <---------DAG2       <-- -----ZmHOX2a(1) <---------DAG2 --------->LBD16           <---------AHL20(2) <----------DOF2      ---   aggagtttttcactctctgcctttttttaccatccgagtaaaaaatgttaaaaaacacatttttttttgtcaattctaactttttggtgatgatgatgca  18226600                                          --------->At4g35610                                          <---------ZAT2                                          --------->ZAT2                                       --------->ZAT2                                       --------->At4g35610                                       <---------ZAT2                                    ---------->DOF2 ----------->GT1             <---------LBD16     ----------->GT1          <---------MYB52(1) <---------ANAC55(2)   <---------AHL20(2) <---------At4g35610            <-------GAMYB   --------->MYB52(1) -------ARR14(2)       <---------YAB1  <---------At4g35610              --------->MYB52(2) ------>ARR14(2)     --------->YAB1  <-----------RAV1(2)               <-------TEIL  --------------->AGL15   aatatgtaaaacgttgagaacatttataatttgggggaatcagctgctgagatgttatatggtcttattcatgttcgttatattccactactaaaggaat  18226700                                                          --------->ICU4                                                       <---------YAB1                                              --------->ARR14(2)                                           --------->ANAC55(1)                                           --------->ANAC58                                           <---------ANAC55(2)                                           --------->ANAC55(2)                                           --------->ANAC58       <---------ATHB12                                           --------->ANAC46<---------ICU4                                          <---------LBD16 <---------YAB1          --------->ANAC58          <---------ZAT6   ------>ZmHOX2a(2)                              <          --------->ANAC58    <---------ARR11(3)   <---------ARR11(3)                        <-------      --------->YAB1          --------->ARR11(3)   --------->ARR11(3)                   <---------DAG2     <---------TOE2(3)       --------->REM1(1)<---------ARR14(2)--------->WOX13(1)      <----------DOF2   ggctgctatggtaagcaagagtacttcttctacatcttgtgttatacggaactgatcttcattattcaatcactgttgaatcgtgttgaacttttttaat  18226800                                                                      <------------CBF                                                                    <---------AHL20(1)                                                                    <---------ARR11(3)                                                                    --------->AHL20(1)                                                                    --------->AHL20(2)                                                                    --------->ARR11(3)                                                                    <---------AHL20(2)      ---------    <-------TEIL                                                 --------->AHL20(2)    ----------->GT1 ---------TOE1(2)                              <---------ANAC46  --------->YAB1      <------------CBF --AHL20(2)     ----------->GT1    <---------ZAT18        --------->WOX13(1) --------->ATHB12  ------   tctacgttcatttgtagtttgttatatggtgtttcagtcccctcttgaatcgtggataatcaatctataatatattgacttattgaatattgaaaaataa  18226900                                         <------------CBF                                          --                                  <------------CBF                     >>>>>>>>>GATA-1            ---                               ------------>CBF                        >>>>>>>>>GATA-4            <--                              --------->ANAC58                         <---------ARR14(2)         <--                              --------->ANAC58                         >>>>>>>>>GATA-3        -------                       <---------------AGL15                    --------->ZAT14            --------->GLK1(1)                       --------------->AGL15       <-----------GT1     >>>>>>>>>GATA-2     --------->CCA1(2) >YAB1--------->WOX13(1)    ---------->DOF2--------->AHL20(2)   <---------ZAT14           --------->ARR11(3) --->YAB1         <---------MYB52(2)  ------------>CBF  <---------CCA1(2)                 <---------ARR11(3)   tcaaagattaatcaaatgctactaactccattaagcaattgccaattgaatatttatcttatcttctacagtggattcaagttcaactagaagatatcaa  18227000  Previous    Next  AGI:  At2g44020.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65362.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 18224635    to: 18226461    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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