Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    ------>ZmHOX2a(2)                                          <-----------GT1 <------ZmHOX2a(2)                                      <---------ANAC58 ---------AGP1                                          <---------ANAC58                 <<<<<<<<<TBF1 ---------ARR11(3)              ---------->ID1 <---------ZAT14                          <------------ -------->ARR11(3) --------->TOE2(3)           --------->ZAT14  <---------MYB59       <<<<<<<<<TBF1 --------CCA1(2)   --------->TOE1(3)           <---------ZAT18  --------->TOE2(3)  <<<<<<<<<TBF1 -----DOF2    <---------MYB59 <-----------RAV1(1)       <---------ANAC46   <-----------GT1     ------   tagatctcacataaggcctaaccttagtcttcttgtcgctctcttccactgtactattgcttgaaaccttactctcttcaccttcttcttcttcttcctc  16052700                                                         <-----------GT1                                                        <---------YAB1                                                      --------->ATHB51                                                      <---------ICU4                                                      <--------HAHB4                                 ------>NtERF2       --------->ICU4                                <---------ALFIN1     <---------YAB1                                --------->DEAR3(1) <--------HAHB4       ------>ZmHOX2a(1)       --------->ATERF1(1) -------->ATHB1    ------>ZmHOX2a(1)         <---------ATERF1(1)  <---------ICU4                               -----   <---------ALFIN1           ------>NtERF2        --------->YAB1                              ------ ------>ZmHOX2a(1)           --------->ANAC46     <---------ATHB12             --------->At4g35610 ------------ANAC81         <---------LBD16       --------->ICU4               <---------At4g35610 >ZmHOX2a(1)       <---------MYB52(1) <-----------------AGL3         <-----------GT1       ----------   ttcctcctcctcttcttctctgttagtcttcccgcctccctccatacttggaatcattattacttctgatgttacaaattcagaagaaatatagaaagaa  16052800                                                  --------->CCA1(2)    <<<<<<<<<<MYB80                                                 <---------ARR14(2) <---------MYB52(1)    <---------DOF5.7(2)                          --------->ARR14(2)------>ZmHOX2a(1)      ---------->DOF2   <---------WRKY12               --------->CCA1(2)                <----------DOF2      --------->CCA1(2) ---->DAG2                       <---------ARR11(3)           --------->WOX13(1) ---------->DOF2  --- ---->DOF2          >>>>>>>ZML2  --------->ARR11(3)         ==============HOX2a_HOX2a----------->GT1 >DOF2           --------->ARR11(3)  <---------TOE2(3)      <------ZmHOX2a(2)  <---------YAB1   <----   agtggtaaacgatagagaagttctaggcttagctagatataggttttggacgatatggatagatcaatcctttggtttgatatgaaagagataaaagacc  16052900                                                                 <---------GLK1(2)                                                               <---------YAB1                  <-----                                                        <-------TEIL                  --------->LBD16                                                       --------->CCA1(2)             --------->HSFB2a(2)                                                      --------->ARR14(2)             <---------HSFB2a(2)        <---------At4g35610              ------->TEIL <---------ARR11(3)             --------->ANAC46       <---------YAB1        --------->GLK1(2)   <------ZmHOX2a(2)                   --------->LBD16   <---------GLK1(1)        <---------ARR11(3)  <---------ARR11(3)                  --------->HSFB2a(2) ------>At4g35610           --------->ARR11(3)  --------->ARR11(3)                  <---------LBD16 -------RAV1(2)  ---------->DOF2       --------->ZAT14<---------ARR14(2)            <---------HSFB2a(2)   agatgaattctgcttagttcaaagcatggagattttgtctgtgaaccctagatcaagatacacttctgattctctctctctctcttcccggaacatgtag  16053000                            <<<<<<<<<MYB98                              <----------DOF2                           ----------->GT1                              <---------DAG2                      <---------ANAC46                                *TSS                      <---------ANAC58                              ---------->ID1                ---                 <-----------RAV1(1)                         --------->ATHB12                     ---             --------->ARR11(3)                       --------->At4g35610                         <--             <---------ARR11(3)                       <---------At4g35610                       -----         --------->TOE2(3)----------->GT1        <---------ZAT14    ------>NtERF2             <------      <---------ALFIN1<---------ANAC58           --------->ZAT14  <---------RAP2.6(2)   --------->At4g35610 ----ETT(2) <---------CCA1(2)            <----------DOF2   <---------WOX13(1)           <---------At4g35610   acaaaccctcacctaaatcttgttgcatatgttaaaaagttttcttttctgttcacagctaattgatttcggcccttttctactatagacagctctatat  16053100                                                                                                 ---- ------>AHL20(2)                          <---------ATHB12                                       ---- -------->TBP                             --------->MYB46(3)                                     ---- -------AHL20(2)           <-------TEIL  -------->P                             --------->AHL20(2) ------>TBP   --------->AHL20(2)        --------->WOX13(1)            ----------->TBP        <------- -----TBP     <---------AHL20(2)--------->AHL20(2)----------->GT1   ------>ZmHOX2a(1)    <---------ANAC46   ataaatagttgtatattttaatatgtggatgcatattaatatcaaccatggagggagaaaactattactcctataaatgagataaattgttgtttatacc  16053200                                                                                                  ---                                                                                               <-----                   --------->ANAC55(1)                                                         ------    --------->ANAC58    --------->ZAT6                                                         ------    --------->ANAC58<---------MYB52(2)                                             <---------------AGL15 ----->TOE1(3)     --------->ANAC58              ---------->DOF2             --------->MYB59  <------ ----->ANAC46      --------->ANAC46     <---------YAB1            <---------YAB1   --------------->AGL15 ----->TOE2(3)     --------->ANAC58  <---------AHL20(2)       <---------ANAC58    <-----------------AGL3 ----GT1----------->RAV1(1)          <---------YAB1           <---------ANAC58    ----------------->AGL3   cttaacatgccaacaaattacaagtaacacttattctatattattgttcaccaaaggctaagatgagtgtgatagaaattaggctctatatatagcatat  16053300                                                                    <-------TEIL                                                                <---------AHL20(2)      <---------ZAT6                                         >>>>>>>>>GATA-1 ------>TOE2(3)                                     <------ZmHOX2a(2) ----ARR14(2)                                      <---------ARR11(3)                --------->ZAT6 --->ARR14(2)                                  ---------->DOF2 --------->AHL20(2)  --------->MYB52(1) --->KAN4(2)     --------->TOE2(3)      <---------YAB1     ----------->GT1------->TEIL------->GAMYB ----TaMYB80 <---------WOX13(1)    <---------ICU4  --------->ARR11(3)     <---------ARR14(2)<--------   tcttagtagtcttagattgccttagttcgtcaaacaaacatttcgattacaaagatcgatatagataaaattcatgtatcgggactaacagtctatgaat  16053400                                                                    <---------YAB1                                                                  --------->YAB1                                                                 --------->ICU4                                                                 <---------YAB1                                                               <--------HAHB4                                                               <---------ICU4                                                               --------->ATHB51                                                               -------->HAHB4                                                               <--------ATHB1                                                               --------->YAB1                                                              <---------YAB1                                                              --------->ICU4                                                              --------->AHL20(2)                                                              <---------ATHB51                                                            --------->YAB1                                                           --------->AHL20(2)                                                           <---------AHL20(2)                                                          --------->AHL20(2)                                                       --------->AHL20(1)                   <--------                                                       <---------AHL20(2)            --------->CCA1(2)                                                       --------->AHL20(2)           <---------ARR11(3)                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         --------->ARR11(3)                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->AHL20(1)                        <-----------GT1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     ---------->DOF2 -YAB1           --------->ZAT6  ----------->RAV1(1)  --------->AHL20(2)--------->AHL20(2)<---------YAB1   gaattagttagtataagtaagactatttacaacaacaacaaaaaaaaaaaaaaaaaaaaaattaataattataagaaaataagaaagatattagtatagt  16053500                                                                                     --------->AHL20(2)                                                                                     <---------AHL20(2)                                                                                  <---------ICU4                                                                                 <---------AHL20(2)                                                            <---------MYB52(1)   <---------ATHB51                                                          <---------ANAC58       --------->ICU4                                                          <---------ANAC58       --------->AHL20(2)                                                          <---------ANAC46     --------->YAB1                                                --------->AHL20(2)         <------ZmHOX2a(1)      --------->MYB52(2)                        --------->AHL20(1)       --------->LBD16    <---------MYB52(1)                      <---------AHL20(2)          --------->HSFB2a(2)  ----------->GT1                          --------->AHL20(2)           <---------LBD16 -ZAT14                      --------->AHL20(2) <---------AHL20(2)      <---------HSFB2a(2)         -   tgagacgttatttgagtttagaagaaaacaaaaaaatgaagaattttaaattttttgataccgtgatgcagtttccaggaaaaataattaaatacaaaat  16053600  Previous    Next  AGI:  At2g38300.1    Description:  DNA binding / transcription factor. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT2G40260.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73581.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447) Range:  from: 16051038    to: 16053070    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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