Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <----------DOF2               --------->At4g35610           --------->ARR14(2)           <---------ARR14(2)          <---------GLK1(1)          --------->GLK1(1)          <---------ZAT2          <---------At4g35610          --------->At4g35610                                     --------->ANAC58         ----------->ARR10                                        --------->ANAC46       --------->LBD16                                            --------->ANAC58      --------->ANAC46 <-----------HVH21      <---------AtLEC2  <---------ALFIN1      --------->HSFB2a(2)         <---------AHL20(2)    --------->ANAC58     <---------LBD16<---------At5g28300<-------TEIL     --------->ANAC58 ----->LBD16  <---------ALFIN1    <-----------GT1       --------->ANAC46 ----LBD16--------->ZAT2       --------->ARR14(2)    <---------REM1(2)                             <- ----GT1 <-----------ARR10     <---------ARR14(2)    <---------ZAT14   ---------->DOF2            ---   ggtttcatccggagctccgcttcaccgtgagcgtatttacattcgtttccatgactacacgaagcctcacgcctaaagtaagaacagagactcgtcttcc  12172600                                                                                    --------->MYB46(3)                                                                                   ------>MYB83                                                                          <-----------ARR10                                                                         <---------MYB52(1)                                                                       <---------ANAC58                                                                       <---------ANAC58                                                                    --------->ARR14(2)  <----------DOF2                                                                    <---------ARR14(2)--------->At4g35610                                 <---------ARR14(2)               <----------DOF2  ------>MYB46(1)                                 --------->ARR14(2)              <------NtERF2    --------->MYB52(1)         <------ZmHOX2a(1)  ----------->TGA1                    ------>NtERF2     ----------->RAV1(1)   --------->At5g28300      ----------->HVH21<<<<<<<<<MYB2     <---------ANAC46  --------->AtMYB61 --------ALFIN1       <---------ANAC58     <------MYB46(1)  <---------DEAR3(1)   --------->MYB46(3) ------>MYB46(3)      <---------ANAC58     <------MYB83    <---------At4g35610  --------->MYB46(3)   accacggtgaaggagtagtaatcttcgtgtctgacgattcgagattggttttctcgtcttcatcggcgcgtttccgtttctcaccaacagcttcaatgtt  12172700                 --------->SPL7            --------->ARR14(2)        <---------TOE2(3)                       --------->ALFIN1   ----            <---------ARR14(2)       --------->YAB1                       <------ZmHOX2a(1)   <------NtERF2     <---------ANAC58              <---------WOX13(1)                  <-----------RAV1(2)   <-------     <---------ANAC58     <---------ZAT2                      ----------->HVH21             <--------  <---------MYB52(1)      <---------At4g35610   --------->ATHB12 --------->ANAC46        <---------AtMYB61   atccgttgcattcgaatcggacgatggaagctcgtcgattgatgatgtctccattggaattggctcgacggaagcaggaggtgtttgggttttggtggct  12172800                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                          <---------GLK1(1)                                                                                        <------MYB83<                                                                                        <------MYB46(1)                                                                                       --------->MYB59        <-------GAMYB                                                                <---------MYB52(1)    <---------At4g35610   <---------YAB1                                           <------MYB83<-----    <---------ZAT2    <---------TOE2(3)                                  <---------At4g35610 <------- ----->MYB52(1)      --------->YAB1                                  <-----------HVH21 <---------AtMYB61 --MYB46(3)        <---------WOX13(1)                          <---------YAB1      <------MYB46(1)<-- -RAP2.6(2)     <---------YAB1           --------->ALFIN1     --------->AHL20(2)   <---------MYB46(3)   aatggaagctcgttgatttcgattgatgatgtttccattggaagtggctcaatgggagtgagattaatataggtcagacgctgggaggttaggtttccgg  12172900     <------NtERF2   <---------ANAC46  --------->RAP2.3(1)  <---------At4g35610  --------->At4g35610  <---------LBD16  <------NtERF2  --------->ATERF1(1) <---------ATERF1(1) ------>NtERF2 <---------RAP2.3(1) <---------ORA47(2) <---------RAP2.6(1) <---------DEAR4(2) <---------ERF1 <---------RRTF1(1) ---------RRTF1(3) ---------RRTF1(2) ---------RAP2.3(2) ---------RAP2.3(3) -------->DEAR3(1) ---------DEAR3(1) ---------RAP2.6(2) -------->ALFIN1 ---------ANAC46 -------->ATERF1(2) --------ABI4(1) --------At4g35610 ------->At4g35610 ------->ATERF1(1) ------->DREB2C(1) ------->RAP2.3(1) -----NtERF2 ------->DEAR4(2) -------RRTF1(1) --->NtERF2 -------RAP2.6(1) -------ATERF1(1) -------ORA47(2) -------RAP2.3(1) -------DEAR4(2) ------RAP2.3(2) ------ATERF1(2) ----->ATERF1(2)                                          --------->HSFB2a(2) ------RAP2.3(3)                                   <---------At4g35610 ------RRTF1(2)                                    --------->At4g35610 ------RRTF1(3)                                  <-----------RAV1(2) ----->DEAR3(1)                                 <---------At4g35610 ------DEAR3(1)                                 <------NtERF2 ---->ATERF1(1)                                <---------RAP2.3(1) -----ABI4(1)                                  ------>NtERF2 >NtERF2                                      --------->ATERF1(2) ----ATERF1(1)                                <---------DEAR3(1) --->LBD16                                    <---------RAP2.3(2) ---LBD16                                     <---------RAP2.6(2) ---RAP2.6(2)                                 <---------RAP2.3(3) ---RAP2.3(2)                                 <---------ATERF1(2)      *TSS ----------->HVH21 ---------ATERF1(2)         ----------->TGA1  <---------ANAC46     --------->ATHB12 ----RAP2.3(1)           <---------ZAT6    --------->ALFIN1       <---------YAB1             -------- --LBD16    <---------At4g35610    --------->ARR14(2)     <---------HSFB2a(2)              <--------- -------ERF1<---------ZAT2  ----------->HVH21--------->RAP2.6(3)<---------ZAT6   <------ZmHOX2a(1)   cggcggcggaaggaagctcgtcgattagtgatgacggtatcggaagtggcggcagatggtcgagaagtgttattggaagtgaaggagtttcaaaattgaa  12173000                            <---------MYB52(1)                        <---------LBD16                      ------>MYB46(1)                      <---------REM1(2)                      -------->P      <---------At4g35610  <-----------HVH21      --------->At4g35610 --------->LBD16                                                         ---   <-------TEIL       ------>MYB83              ------------>CBF                                <---- ->AHL20(2) --------->TOE2(3)          <-----------GT1           <---------AHL20(2)        <--------- ---CBF     --------->TOE1(3)  <---------At4g35610 <------------CBF                     <-----------GT1   taagattcatcagaccttaaaccctacccggttagatgattttacttcggtccaattgtctgattagtttattagtttcggtttagtttttaactttgta  12173100                                                                               ------->MYC2                                                                          --------->SPL7                                                                        <---------SPL7                                                                       --------->TOE1(1)                 <---------MYB46(3)                                    --------->TOE2(1)               <---------MYB52(1)                              <---------MYB52(1)              <---------MYB52(1)                              --------->LBD16  <-------MYC2             --------->LBD16                                 <---------ATERF1(2)--------->ANAC46     <---------AHL20(2)                                      <---------HSFB2a(2)--------->ANAC58    --------->AHL20(2)       ----------->GT1                 --------->HSFB2a(2)--------->AtLEC2    <---------AHL20(2)   --------->DAG2                      --------->ETT(1)  ------->MYC3   --------->YAB1----------->GT1                             --------->ATERF1(2)--------->ANAC58    < ------>MYB46(3) --------->MYB52(2)                         <---------LBD16    <-------MYC3         - -------GT1<---------LBD16   <---------MYB46(3)   --------->ZAT6      <------NtERF2             ----- -DOF2   <-----------GT1---------->DOF2         <-----------GT1<------NtERF2<---------ALFIN1<--------   accaattttaatttccggtttgttaataaagtggttaagagttttcaattttactctattttgccggaagtcgtcgtaccacatgcaagtctaattacca  12173200                           --------->AHL20(2)                           <---------AHL20(2)            --------->GLK1(2)                 --------->ZAT18              ------>NtERF2          <---------ANAC46                 <---------ZAT14              --------->LBD16------>ZmHOX2a(1)               <---------ZAT14            <---------ARR14(2)--------->TOE2(3)               --------->REM1(2)          --------->ARR14(2)=========================================               --------->ZAT14       <-------TEIL       --------->KAN4(2)               <---------ZAT18   <---------------AtSPL3 <---------GLK1(2)         ----------->RAV1(1)     <---------------AtSPL8 <---------ARR14(2) ---------ARR11(3)        --------->AHL20(2)<---------LBD16 --------------->AGL15  --------->GLK1(2) -------->ARR11(3)  --------->ANAC46 --------->SPL7   <---------YAB1 <---------ANAC58 ----->DOF2  --------------->AtSPL8<---------SPL7   --------->YAB1   <---------AtLEC2 ---GT1  --------->MYB52(1)--------->AHL20(1)<---------RAP2.6(2)     <---------ANAC58               <   aagagcttaaacaacagtgtacaccaaaaaaaattagggtacggtttccggctatgaagattcctaaaattgcatggaatacgagtttctatgttttttg  12173300                             --------------->AGL15                             ====================================HOX2a_HOX2a                             ------>ZmHOX2a(1)                             <---------------AGL15                            --------->TOE2(3)                            <-----------------AGL2                            <-----------------AGL3                            ----------------->AGL2                         --------->GLK1(2)                        <---------ARR14(2)                        <---------GLK1(2)                        --------->KAN4(2)             <---------ZAT6 --------------->AGL15                         --------->AHL20(2)      <---------YAB1   --------->HSFC1(2)                               <----------DOF2     <---------AHL20(1)<---------HSFC1(2)                           --------->WRKY38(1)    <---------ICU4     --------->HSFB2a(1)                          --------->WRKY45   <---------YAB1      <---------HSFB2a(1)                          --------->WRKY12               <-   --------->ICU4   <------ZmHOX2a(1)                          ------>ZmHOX2a(2)                   <- --------->YAB1   <---------TOE2(3)                          --------->ARR11(3)                ------ ===========================================MADS_MADS     ------>ZmHOX2a(2)                   <------ ---------YAB1    <---------TOE1(3)                      <---------At4g35610                  -------   ttttcattatttttagagttaaggaagattcctaaaattggaatagattaagaagtctgatctgatctcgttgactttaaatttggacagcctgtaagct  12173400                                                                                            ------>ZmHOX2a(1)                                                                                        --------->ARR11(3)                                                                                        <---------ARR14(2)           --------->ATHB12                                                             --------->ARR14(2)          <---------YAB1                                                              <---------AHL20(1)         <---------TOE2(3)                                                 <---------YAB1  --------->ANAC46        --------->MYB52(1)                                               --------------->AGL15 >>>>>>>>>ARR2                                                           <---------------AGL15 >>>>>>>>>ARR1                                                          <-----------------AGL2 <---------GLK1(2)                                                      <-----------------AGL3 --------TOE2(3)                                                        <---------YAB1<---------ARR11(3) --------YAB1           <---------ICU4                         ----------->GT1  ----------->GT1 --->TOE1(3)           --------->ICU4                  <---------ICU4   ----------------->AGL3 ---At4g35610      --------->ZAT14                    <---------YAB1    ----------------->AGL2 -->At4g35610      <---------ZAT14             --------->AHL20(2)     <-----------GT1 --------->ARR11(3)   taagattgtctaacgattgtctgtactaattgtatagaacattgttgttttaaatactaattgtatagtatattactattagtagtaatatatcctccat  12173500  Previous    Next  AGI:  At2g28450.1    Description:  zinc finger (CCCH-type) family protein. similar to RNA methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G21300.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ63151.1); similar to OSJNBa0094O15.14 [Oryza sativa (japonica cultivar-group)] (GB:CAD39345.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO21837.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain (Uracil-5)-methyltransferase (InterPro:IPR010280); contains InterPro domain Methyltransferase small; (InterPro:IPR007848) Range:  from: 12169128    to: 12172971    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version