Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ------->MYC2                                                            ------->MYC3                                                            <-------MYC3                                                            <-----------HVH21                                                            <-------MYC2                                                           --------->TGA1a                                                           <---------O2            --------->ARR14(2)                             <---------ANAC55(2)            <---------ARR14(2)                             --------->ANAC46<------MYB83          ----------->ARR10                                --------->O2    <------MYB46(1)     <---------LBD16              ---------->DOF2          --------->ANAC55(2) ---------ANAC46                  ===================================bZIP_DOF ---------YAB1          --------->TOE2(3)                  <---------TGA1a--------->MYB59           - ------MYB52(1)         --------->YAB1         --------->ZAT6           <---------MYB52(1)          <   ttgtgtttggggaagaaccgttctaatcttattccctaaagtcttaaaaacactaaattacacgtgagagacctgtttggttatcgggtgagagaaaaat  11142400                                                                                                    <                                                                                                    -                                                                                                    -                               <------MYB83                                                         <                               <------MYB46(1)                                                      <                --------->ANAC46                                            <---------AHL20(2)      <        --------->ALFIN1<---------ARR11(3)                               <--------ATHB1            <-       <-------PIF5     --------->ARR14(2)                               --------->ATHB51          <-       ------->PIF5 --------->ANAC58                                     <---------ICU4            <-      --------->At4g35610--------->CCA1(2)                              <---------ATHB12           <-      --------->ZAT2--------->ANAC46                                    <---------ATHB51           <-    <-----------RAV1(2) <---------ARR14(2)                              --------->ICU4             <-   <---------At4g35610  --------->ARR11(3)                          ------------>CBF               --   <---------ZAT2   --------->ANAC58<------NtERF2                  --------->ANAC58                <-  ----------->RAV1(1)  *TSS   --------->MYB59 <-------TEIL         --------->ANAC58               --- -------->ZAT18 --------->ANAC58  <---------DEAR3(1)               --------->ANAC46             <---- ---------ZAT18 --------->ANAC58<-----------HVH21               --------->KAN4(2)         <----------DOF2   tgtgcagcaggtggagacacgcacgagatatgtaggtcgcctcttaagtacataaatacccttggacatacccaataattcattttagtaggctttttct  11142500            ---------->DOF2         --------->AHL20(2)       --------->TOE2(3)    <---------ALFIN1    ----------->RAV1(1) <---------PCF5 --------->PCF2 ------>NtERF2 --------->ATERF1(1) <---------ATERF1(1) <------NtERF2 -----------TCP11(1) -------->RAP2.6(2) ----->NtERF2 ---------ATERF1(1) ---------ERF1 ---------RAP2.3(1) --------ANAC58 --------RAP2.3(3) --------RAP2.6(2) --------ATERF1(2) --------ANAC58                                                                                ------ --------DEAR3(1)              --------->AHL20(2)                                             <------ ------->ATERF1(2)        <<<<<<<ZML2                                              <---------AHL20(2) --------RAP2.3(2)     <---------HSFB2a(2)                                     --------->AHL20(2) ------>RAP2.6(3)      --------->HSFB2a(2)--------->TOE2(3)             <---------YAB1  ---------->DOF2 -------RAV1(1)    <------ZmHOX2a(1)    <------NtERF2        ---------->DOF2   <---------AHL20(2)   ggcggcccacattaaaaagaaggacctagaacataaattggcatcgttagaaatgggcttaagtaaaggcccatatgatatatatataaaaaaagagatt  11142600                                             ------->MYC3                                             <-------PIF4                                             ------->PIF4                                             <-------MYC2                                             <-------MYC3                                             ------->MYC2                                             ------->MYC4                                             <-------MYC4                                            <---------ANAC55(2)                                            --------->ANAC55(2)                                            <---------TGA1a                                            --------->bZIP60(2)                                            =============================bZIP_DOF                                            --------->O2                                            <---------O2                                            --------->TGA1a                                           ------>NtERF2                             <---------ANAC58------->PIF5                  <---------HSFB2a(2)     <---------ALFIN1                  --------->HSFC1(1)      <------------OsbHLH66                  <---------HSFC1(1)     <------NtERF2                  --------->HSFB2a(2)   ------>NtERF2                            <---------ZAT14                 <---------LBD16        <-----------------PIF3(1)                --------->ZAT14               --------->GLK1(2)       --------->ETT(2)                     --------->ZAT14             --------->HSFC1(2)       ---------->ARF1                  ------------>CBF  ------>ZmHOX2a(2)             <---------HSFB2a(1)      ---------->ID1                <---------HSFC1(2) <---------ARR11(3)       --------->MYB52(1)    <---------ANAC58<-------PIF5           --------->HSFC1(2) --------->ARR11(3) --->GLK1(2) --------->HSFB2a(1)  <---------ANAC58            ---------->DOF2 ----------->GT1 <------ ---GLK1(2)  <---------HSFC1(2)   <---------ANAC58         <-----------HVH21<---------ZAT14   <------   ctagattagtaacgaagtttctggaacattgtcttgtcttgtcgccacgtgctcacataaatgtcaaagaagcttcaatacagtgaaatgatcttgtctt  11142700       <---------HSFC1(2)       --------->HSFC1(2)                                   *TSS       --------->HSFB2a(1)                         ------>NtERF2       <---------HSFB2a(1)                        <---------ALFIN1     <<<<<<<ZML2                                  --------->ANAC58  <---------HSFC1(1)                              --------->ANAC46  --------->HSFB2a(2)                             --------->ANAC58  <---------HSFB2a(2)                           <---------ALFIN1  --------->HSFC1(1)                  <-----------GT1 ------------>CBF ---ANAC58                  <---------ICU4    ------>ZmHOX2a(1) ---ANAC58                 <---------YAB1    --------->ANAC46                             ---------->DOF2   gtctctagaaccttctcttctctccccttataatttcatttctctctcctccacgcctcaatctctcaactcaaaactcaacattttctgaagaaagtcg  11142800                                                                              <-------TEIL                                                                        --------->ANAC58                                                              <---------HSFB2a(2)                                ----------->RAV1(1)           --------->HSFB2a(2)                      --------------->AGL15                   <---------HSFC1(1)                      <---------------AGL15                   --------->HSFC1(1)                     ----------------->AGL3          <----------DOF2    --------->ANAC58                     ----------------->AGL2    --------->ARR11(3)       --------->ANAC55(2)        --------->ANAC46       <----------ID1  <---------ARR11(3)       <---------ANAC55(2)  <-------  <----------DOF2    <-----------------AGL2   --------->CCA1(1)       <-----------GT1      <---------ANAC58  <---------DAG2     <-----------------AGL3   --------->RVE1(1)  ---------->DOF2           <---------ANAC58   caaactttacccaaaacccagtttctaattttagcaacaaaatcaaaaatatctacttttgtttctcgaaagttacgaaattcatacaatctagcttatc  11142900                                                                        --------->DOF5.7(2)                                                                      <---------ANAC46                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                   ----------->HVH21                                                                   ----------->TGA1                --                                                              --------->MYB52(1)                   <-                          ------->GAMYB                      --------->ARR14(2)         <---------RAP2.6(2)  <---------At4g35610  --------->MYB52(1) ---------->DOF2    <---------ARR14(2)        <---------At4g35610 --CCA1(2)     <---------TOE2(3)     <---------ARR14(2)  <------ZmHOX2a(1)         <-----------RAV1(1)   tctgagcttatggatttgagataaacaacgaaaatggaagaactgaaagtggaaatggaggaagaaacggtgacgtttactggttctgtagcggcttctt  11143000                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                 <---                                                                                                 ----                                                                                              <------ZmHOX2a(2)                                                                                              -------                      <---------HSFB2a(2)                                                     -------                 ------>ZmHOX2a(1)                                                           --------           ------>ZmHOX2a(1)                                                                 --------         ===============HOX2a_HOX2a                                                          <-------         ====================HOX2a_HOX2a                       <---------ARR14(2)            --------         ------>ZmHOX2a(2)                               <---------ALFIN1                    <-------        <------ZmHOX2a(2)                                --------->AtMYB61                   <-------        =====================HOX2a_HOX2a                 --------->DEAR3(1)                  --------        ================HOX2a_HOX2a                     <---------ABI4(2)                   <--------       --------->ARR14(2)                               --------->MYB46(3)                  <--------       --------->ARR11(3)                               <---------MYB55(2)     --------->ANAC58 -----       <---------ARR11(3)                              ------>NtERF2           --------->ANAC55(2)---       <---------ARR14(2)                  --------->ANAC46    --------->ARR14(2)           ---------      <------ZmHOX2a(1)     --------->MYB52(1)     <---------PCF5              --------->ANAC46<----- ------->At4g35610    --------->HSFB2a(2)--------->MYB52(1)   <---------MYB52(1)           ---------- --------At4g35610    ------>ZmHOX2a(1)<----------DOF2 <---------ATERF1(1)     --------->ANAC58------   catctgtaggatcctcttcctctcctagaccaatggaagggcttaacgaaacagggccaccaccgtttctgactaagacttacgaaatggtggaagatcc  11143100     --------->ARR14(2)     <---------ARR14(2)   ----------->HVH21 <------NtERF2 --------->ATERF1(1) ----->NtERF2 ---------ATERF1(1) ------->DEAR3(1) --------->HVH21 --------DEAR3(1) ------ATERF1(1) ----->LBD16 -->ARR14(1) -->CCA1(2) ->ARR11(1) ->ARR14(3) --ARR14(3) ->ARR14(2) --ARR11(3)                                                  <---------ICU4 --ARR14(2)                                               --------->YAB1                       ------ ->ARR11(3)                                          <---------ARR14(2)                <---------MYB52(1) -HSFB2a(1)                <---------AtMYB61         --------->ARR14(2)              --------->O2 -HSFC1(2)       <---------ANAC58                    <---------GLK1(2)               --------->ANAC58 ---->TOE1(2)    <---------ANAC58                --------->ALFIN1                    --------->ANAC58 ------>ATERF1(1)<---------ANAC46              <---------ANAC58                      --------->ANAC46 >HSFB2a(1) --------->MYB55(2)                 <---------ANAC58                      --------->bZIP60(2) ----LBD16  <---------MYB46(3)                 <---------ANAC46                    <---------ALFIN1 ->ARR10   <---------AtMYB61                   --------->ALFIN1                 ------>ZmHOX2a(1)---- >ZmHOX2a(2)--------->ABI4(2)           <----------DOF2  <---------YAB1--------->MYB46(3)      ------   ggcgacggacacggtggtttcttggagtaatggtcgtaacagctttgtggtgtgggattctcataagttctcaacaactctccttccacgttacttcaag  11143200                                                              <---------CCA1(2)                                                           ------>ZmHOX2a(1)                                                      <---------ANAC58                          --------->ZAT2              <---------ANAC58                          <---------At4g35610     <----------DOF2                          --------->At4g35610------->TEIL --------->TOE2(3)                          <---------ZAT2 --------------->AtSPL3 --->ANAC58            <---------MYB52(1)--------------->AtSPL8 ----->YAB1           <-----------TGA1   <---------------AtSPL8<---------ARR11(3) --->ANAC58           <-----------HVH21  <---------------AtSPL3--------->ARR11(3)                ----   catagcaatttctcaagttttattcgtcagctcaatacttatgtaagtacctctttgcttccttatatctacttagtcttgtttctgtttttgtttctaa  11143300  Previous    Next  AGI:  At2g26140.1    Description:  FTSH4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/ metallopeptidase. similar to FTSH11 (FtsH protease 11), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G53170.1); similar to ftsH-like protease [Pisum sativum] (GB:CAG25608.1); similar to putative FtsH protease [Lycopersicon esculentum] (GB:AAP32310.1); similar to hypothetical protein OsI_002481 [Oryza sativa (indica cultivar-group)] (GB:EAY74634.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain Peptidase M41; (InterPro:IPR000642); Range:  from: 11138656    to: 11142423    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g26150.1    Description:  ATHSFA2 (Arabidopsis thaliana heat shock transcription factor A2); DNA binding / transcription factor. Identical to Heat stress transcription factor A-2 (HSFA2) [Arabidopsis Thaliana] (GB:O80982); similar to AT-HSFA6B (Arabidopsis thaliana heat shock transcription factor A6B), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G22830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43809.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232) Range:  from: 11142760    to: 11144474    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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