Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->YAB1                  <-------TEIL               --------->GLK1(1)              <---------ARR14(2)              --------->ARR14(2)              --------->ARR11(3)         <---------TOE1(3)                                         --              <---------ARR11(3)         <---------TOE2(3) ------->GAMYB                           <-             <------ZmHOX2a(1)--------->YAB1              <------------MYB.PH3(1)  <---------------AGL15             ===================HOX2a_HOX2a--------->ARR11(3)                <---------O2        ----         ---------->DOF2      --------->TOE2(3)         <---------DOF5.7(2)  --------->O2        <---     <---------ANAC55(2)   --------->WOX13(1)           --------->MYB52(1)<------ZmHOX2a(2)      ---- -------------->AGL1     <------ZmHOX2a(2) <-----------HVH21   <----------DOF2    ----------------->AGL1   accaaaaacgtgaaaggatattcatagatcaatctcaattcttaaggtcatgtatagataacggactttagaatcgatcacgttgccaaactttgaaaat  9277600           <----------DOF2          ------>ZmHOX2a(2)          ========================HOX2a_HOX2a         =========================HOX2a_HOX2a         <---------RVE1(1)         <------ZmHOX2a(2)        --------->ARR14(2)        --------->ARR14(3)        <---------ARR14(3)        --------->ARR11(3)        <---------ARR11(3)        --------->AGP1        <---------ARR14(2)      ----------->ARR10     --------->SPL7    <---------MYB52(1)   --------->LBD16                                                                                  -  --------->ANAC46                                                                                 --  --------->ANAC55(2)                         --------->ANAC58                                   ---- ------->ARR14(2)                      <---------MYB52(2)                              --------->CCA1(2) --------ARR14(2)                      --------->ANAC58                               <---------ARR11(3) ----->AHL20(1)                        --------->ANAC58                               --------->ARR11(3) ------ARR11(3)            --------->ICU4     --------->ANAC58                  ---------->DOF2 ----- ----->ARR11(3)            ------>ZmHOX2a(1)---------->DOF2          >>>>>>>>>>>>>>>>>LFY    --------   atatccgtaagatctttttcatcggtgtcctgatcaagaccacgaacaaagcaagtgtattcaacatttgtagccattgtttgaaagagatatatcaaag  9277700                                                                                                   <x                                                                                                   <x                                                                                                  <xx                                                                                                  <xx                                                                                                 <xxx                                                                                                 <xxx                                                                                                <xxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             --------                                                                                         <---------MYB59                                                                                     <xxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                >>>>>>>>>>>>>>>>>LFY                                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        <---------ARR14(2)  <xxxxxxxx                                                                        --------->ARR14(2) --------->MYB52(1)                                                                      <xxxxxxxxxxxxxxxxxxsmallRNA(si3) -------->DAG2                                                   xxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxx -------->DOF2                                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----->ARR11(3)                                                  <--------P   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---->YAB1                                  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxxsmallRNA(se3) -->DOF2                          --------->AHL20(2)       <xxxxxxxxxxxxxxxxxsmallRNA(fl3)------>ZmHOX2a(1)   ataaagtataggttctaccgagcccaaaaaatgcaaaaatataggttctaccgagaattgaactcgggttactggattcagagtccaatgtcctaaccgc  9277800                        <---------MYB59                      ------->TEIL                      <-----------ARR10                      <---------ARR14(2)                      --------->ARR14(2)                      <---------ARR11(1)                     <---------CCA1(2)                   --------->ANAC55(1)                   <---------ANAC58                   --------->ANAC55(2)                   --------->ANAC58                   <---------ANAC55(2) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxsmallRNA(fl3)               <---------YAB1 xxxxxxxxxxxxxxsmallRNA(si3)               <-----------GT1 ->MYB46(3)   *TSS <---------ANAC55(1) <-----------TBP xxxxsmallRNA(se3) <---------ANAC58  <---------AHL20(2)                      <----------DOF2 xxxxsmallRNA(se3) --------->ANAC58  --------->AHL20(2)                     <---------ANAC58 xxxsmallRNA(se3) <-------TEIL      <---------AHL20(2)                      <---------ANAC58 xxxxxxxxxxxxxxsmallRNA(s2)      --------->AHL20(2)                      <---------MYB52(1)         < xxxxxxxxxxxxxxsmallRNA(se3)    <---------YAB1     <---------AHL20(2)  <---------MYB46(3) <----------DOF2   tagaccatagaaccaattgatacgtatctaacttattatttatttatacttgttttatttcatcttctccgagccgttgctttgctctatctcttttcca  9277900                                                                                    --------->At4g35610                                                                                    <---------At4g35610                                                                                   --------->MYB52(2)                                                                                --------->TOE2(3)                                                                                --------->TOE1(3)                                                                           --------->ZAT14    -------                    --------->At5g28300                                    <---------ZAT14    -------               <---------ZAT14                 ------>NtERF2           <---------ALFIN1      --------               --------->WRKY38(1)            --------->ANAC46        <---------ZAT14      --------->REM1(1)              <---------MYB52(1)              <---------ETT(1)   <---------ANAC58--------->DOF5.7(2)      <----------DOF2   <-----------GT1       ----------->HVH21  <---------ANAC58<---------MYB52(1) -----------GT1--------->ZAT14     ------------>CBF       <----------DOF2--------->ANAC46  <---------ALFIN1   ttttactactttctccgttcactgtaaaaccatctctctcaattctctccgacaacgttgctctaatgcttctccactgcaacgttagctactacacctc  9278000                                                                         --------->DEAR3(1)                                                                         --------->RAP2.3(3)                                                                         --------->RRTF1(2)                                                                         --------->RRTF1(3)                                                                         <---------ATERF1(2)                                                                         --------->DREB2C(2)                                                                         --------->ANAC46                                                                         --------->ATERF1(2)                                 --------->ANAC58                        --------->RAP2.6(2)                             ------>NtERF2                               --------->RAP2.3(2)                             <-----------HVH21                          --------->RRTF1(1)                             <---------RAP2.6(3)                        <------NtERF2                            --------->DEAR3(1)                          --------->DEAR4(2)                            <---------ATERF1(2)                         --------->ATERF1(1)                            --------->RAP2.3(2)                         --------->ERF1                            --------->RAP2.6(2)                         --------->ORA47(2)                            --------->ATERF1(2)                         --------->RAP2.3(1)                            --------->RRTF1(3)                         ------>NtERF2                            --------->RAP2.3(3)         --------->ARR14(2)  ----------->RAV1(1)                            --------->RRTF1(2)          --------->ARR11(3) <------NtERF2                           --------->ERF1               <---------ARR14(2)<---------ATERF1(1)                           --------->RRTF1(1)         --------->ANAC58 <---------RAP2.3(1)                           --------->RAP2.3(1) --------->ARR14(2)      <---------ATERF1(1)                          ------>NtERF2 ------->GAMYB --------->ANAC58<---------DEAR3(1)                          <---------ATERF1(1)  <---------ARR14(2)    --------->ATERF1(1) <-------TEIL                         --------->DEAR3(1) <------NtERF2 <-------TEIL--------->DEAR3(1)<------ZmHOX2a(2)                   <---------CCA1(2)   --------->DEAR3(1)--------->CCA1(2)--------->ABI4(1)    <-----      --------->TOE2(3)  --------->ANAC46 --------->DEAR3(1)        <-----------HVH21  <---------ARR11(3) -->AtMYB61     ------>ZmHOX2a(1)--------->ANAC58 <-----------GT1   <---------ATERF1(1)--------->AGP1 -->TOE2(3)<---------At4g35610<------NtERF2------>NtERF2<---------ARR11(3)------>NtERF2--------->ARR14(2) ->ANAC46--------->REM1(1)--------->LBD16--------->RAP2.3(1)       --------->ANAC46    <---------ARR14(2)   aacgttttccttcatctcctcatctctccgccgtcaagacaacgccgacgattcacaagatacagtaatccgtcgccgccacaatgctagatccatttct  9278100                                                                                      <------NtERF2                                                                                    <---------DEAR3(1)                                                                                   --------->LBD16                                                                                   <---------LBD16                                                                                   ------>NtERF2                                                                                   <---------At4g35610                                                                                   --------->At4g35610                                                                                 <---------LBD16                                                     --------->ANAC58           ------>ZmHOX2a(1)       ------>NtERF2                                 --------->ANAC46          <---------ALFIN1       --------->LBD16                               --------->ANAC58        ------>ZmHOX2a(1)      --------->ANAC58                         ------->TEIL               ------>ZmHOX2a(1)      --------->ANAC58                         --------->GLK1(2)         <---------ALFIN1      --------->ANAC46                        <---------GLK1(2)        ------>ZmHOX2a(1)      ------->GAMYB  <---------MYB59          <---------ARR14(1)      <---------ALFIN1------>NtERF2      --------->RAP2.6(2)                 --------->MYB52(1)          <xxxxxxxxxxxxxxxxsmallRNA(se3)-     --------->MYB46(3)---------->DOF2 --------->TOE2(3)            ------>ZmHOX2a(1)------>NtERF2 -- ------GT1 --------->ICU4              --------->TOE1(3)   --------->TOE2(3)<---------ALFIN1      <--   ctatacatccgccataatcgagacctaaagctcaacaaaaaccctaacgaatctcaagaaacctttgttcctcctcctcctcctccgcggcgagatttag  9278200               --------->ANAC58               --------->ANAC58           <------ZmHOX2a(2)          <---------ARR14(2)                                 ------>ZmHOX2a(1)                  -----          --------->ARR14(2)                               ----------->RAV1(2)           <---------At4g35610 -------->At5g28300      --------->At4g35610   --------->GLK1(1)                        <-----------RAV1(1) --------->GT1 --------->ANAC46               <---------ARR11(3)                      <---------At4g35610 -------DEAR3(1)         <---------At4g35610  --------->ARR11(3)           --------->ANAC46 <--------   acggtgaaaaccgatccaagctacttgagctctctcttgtaactagaagaactccacaatttcctggttcaatctacgctcaatctgcttctgatgctga  9278300                                                   <---------YAB1                                                   --------->ICU4  <---------ANAC58                               --------->YAB1                   ---------->DOF2  <---------ANAC58                              <---------YAB1            <---------YAB1 ---->ARR11(3)                         ----------->HVH21                <---------At4g35610 -At4g35610                     <---------LBD16 --------->ICU4          --------->At4g35610   tattgcttcttctcttccttcgcttcgtaattttctcggctctgatggtgatgatgatggagagagtgagagggagatgatagttaaagcgcttgagatt  9278400                                                   --------->CCA1(2)                                                  --------->ARR14(2)                                                  <---------ARR14(2)                                                  --------->ARR11(1)                                                ----------->ARR10                                                <-------TEIL                                             ----------->GT1               <-----------HVH21                      <---------YAB1        --------->DAG2   <---------ANAC58                      <-            ---------->DOF2               ---------->DOF2    --------->ANAC55(2)                  <--          --------->ANAC58               <------ZmHOX2a(1)   <---------ANAC46             <---------ANAC58          --------->ANAC58      <----------DOF2<--------P    <---------ANAC58             <---------ANAC58       ----------->TGA1 ---------->DOF2--------->MYB59       <---------ANAC55(1)      <---------MYB52(1)   ---------->DOF2<---------GLK1(2)<---------MYB46(3)        <---------ANAC55(2)    ------>ZmHOX2a(2)   agaaggaaagtgacgaaagagattatcaaagagtctttggttaggaaaggtagatttgggattacgtatgcgactaatgtcactgatcgtttgggtgatt  9278500  Previous    Next  AGI:  At2g21690.1    Description:  RNA-binding protein, putative. similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.2); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.3); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.1); similar to putative glycine-rich RNA-binding protein [Dianthus caryophyllus] (GB:BAF34340.1); similar to Glycine-rich RNA-binding protein GRP2A (GB:P49311); similar to S Range:  from: 9277194    to: 9277677    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g21700.1    Description:  pre-tRNA. tRNA-Gln (anticodon: CTG) Range:  from: 9277743    to: 9277814    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g21710.1    Description:  EMB2219 (EMBRYO DEFECTIVE 2219). similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47626.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 9277966    to: 9280498    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version